Rw4G004800

kDa ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0010171
Physical Location & Seq
Forward (+)
9311884 .. 9314311
2428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G004800.1

Sequence Viewer

Length: 927 bp
ATGGCTGCCACCGCAGCCGCAGCCATGAGCTCGTCTTTCTCTCCTTCCATCCACACCCTCAAATGCATGCGCTCCAATCACGTGCACTTAGCCCCTCACCATGATCTTCACCTCAGAATCACAACACCTGCCCGCATGCTATCATCGTCGTCGTCGCTATCTGCTCATTCATGTGTTATAGATCAGCCACTGCTTTCTAGGCGCGTGCTGAGAATATCGTGCGCTTCTGTGGACGTGGCTGTGACGGAGGAGGTTGAAGAAGCTGTTGTAGCGGCTGAGGAGGAAAAAGAGAAGCAAGCTGAAGAGGAAGTAGTGGCGCCGATAGCTGAAGCGGCGGCCGATGAAGTTTCGAGTGAGGCTGGTGAGGTTGGAGGTGAAGTTTCGACTGATGAGCTTAGTGTGAACACGAAGCTTTACTTTGGGAACCTTCCTTACAGTGTTGACAGCGCACAGCTTGCTGGGATAATTCAGGACTATGCAAGTCCTGAACTCATTGAGGTTCTCTATCATAGGGACACCGGAAGAAGCAGAGGATTTGCATTTGTGACGATGAGCAGTGTTGAAGATTGCAATGCTGTAATTGAAAATCTTGATGGACGGGAGTACAGTGGCCGAACCTTGAGGGTTAACTTTTCGGACAAACCTAGAGCGAAAGAACCTCTATATCCAGAAACTGAGTACAAACTTTTTGTTGGGAATTTGTCCTGGTCAGCCACATCTGAGAGTTTGACAACAGCTTTCCAAGAATATGGAAATGTGGTTGGAGCCAGGGTTCTATATGATGGGGAGACAGGAAGGTCTCGTGGTTATGGATTCGTATGCTTCTCAACAAAAGCAGAGATGGAAACTGCCTTACAATCTCTAGATGGAGTGGAACTAGAGGGAAGAGCAATGCGTGTAAGCTTGGCTGAAGGAAAGCGTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05130 map05130
Pfam Domains
Protein Families
RRM_1

Protein Analysis

308

Amino Acids

33.4

Weight (kDa)

4.88

Isoelectric Point (pI)

52.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 138 - 208 4e-13 RNA recognition motif
RRM_1 PF00076 229 - 298 5.7e-20 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 136
AasI GACNNNNNNGTC 1 cut(s) 796
Acc36I ACCTGC 1 cut(s) 136
AccB1I GGYRCC 1 cut(s) 316
AccII CGCG 1 cut(s) 204
AciI CCGC 6 cut(s) 12, 18, 133, 272, 332, 335
AcoI YGGCCR 2 cut(s) 336, 610
AcsI RAATTY 1 cut(s) 697
AcuI CTGAAG 2 cut(s) 321, 348
AcvI CACGTG 1 cut(s) 82
AcyI GRCGYC 1 cut(s) 317
AfaI GTAC 2 cut(s) 605, 680
AgsI TTSAA 3 cut(s) 257, 563, 584
AjiI CACGTC 1 cut(s) 235
AjnI CCWGG 2 cut(s) 704, 767
AloI GAACNNNNNNTCC 2 cut(s) 756, 788
AluBI AGCT 9 cut(s) 30, 263, 299, 326, 394, 412, 454, 737, 903
AluI AGCT 9 cut(s) 30, 263, 299, 326, 394, 412, 454, 737, 903
Alw21I GWGCWC 2 cut(s) 32, 87
Alw26I GTCTC 2 cut(s) 782, 804
Alw44I GTGCAC 1 cut(s) 83
AlwNI CAGNNNCTG 2 cut(s) 190, 674
AoxI GGCC 2 cut(s) 336, 610
ApaLI GTGCAC 1 cut(s) 83
ApeKI GCWGC 3 cut(s) 5, 14, 20
ApoI RAATTY 1 cut(s) 697
Asp700I GAANNNNTTC 1 cut(s) 919
AspLEI GCGC 5 cut(s) 72, 204, 224, 319, 449
AsuHPI GGTGA 4 cut(s) 89, 101, 374, 386
BaeGI GKGCMC 1 cut(s) 87
BanI GGYRCC 1 cut(s) 316
BanII GRGCYC 1 cut(s) 32
BauI CACGAG 1 cut(s) 801
BbrPI CACGTG 1 cut(s) 82
Bbv12I GWGCWC 2 cut(s) 32, 87
BbvCI CCTCAGC 1 cut(s) 276
BbvI GCAGC 2 cut(s) 26, 32
BccI CCATC 5 cut(s) 56, 587, 776, 835, 860
BciT130I CCWGG 2 cut(s) 706, 769
BcoDI GTCTC 2 cut(s) 782, 804
BfaI CTAG 4 cut(s) 198, 645, 863, 878
BfoI RGCGCY 1 cut(s) 320
BfuAI ACCTGC 1 cut(s) 136
BisI GCNGC 7 cut(s) 6, 15, 18, 21, 273, 333, 336
BlsI GCNGC 7 cut(s) 7, 16, 19, 22, 274, 334, 337
Bme1390I CCNGG 2 cut(s) 706, 769
BmgBI CACGTC 1 cut(s) 235
BmiI GGNNCC 3 cut(s) 318, 425, 766
BmrFI CCNGG 2 cut(s) 706, 769
Bpu10I CCTNAGC 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 640
BsaAI YACGTR 1 cut(s) 82
BsaHI GRCGYC 1 cut(s) 317
BsaI GGTCTC 1 cut(s) 804
BsaJI CCNNGG 1 cut(s) 768
BsaWI WCCGGW 1 cut(s) 518
BsaXI ACNNNNNCTCC 4 cut(s) 363, 393, 756, 786
Bse3DI GCAATG 2 cut(s) 577, 897
BseBI CCWGG 2 cut(s) 706, 769
BseDI CCNNGG 1 cut(s) 768
BseGI GGATG 1 cut(s) 48
BseMI GCAATG 2 cut(s) 577, 897
BseMII CTCAG 5 cut(s) 127, 200, 267, 666, 711
BseRI GAGGAG 2 cut(s) 263, 293
BseSI GKGCMC 1 cut(s) 87
BseX3I CGGCCG 1 cut(s) 336
BseXI GCAGC 2 cut(s) 26, 32
BseYI CCCAGC 1 cut(s) 458
Bsh1236I CGCG 1 cut(s) 204
Bsh1285I CGRYCG 1 cut(s) 339
BshFI GGCC 2 cut(s) 338, 612
BshNI GGYRCC 1 cut(s) 316
BsiEI CGRYCG 1 cut(s) 339
BsiHKAI GWGCWC 2 cut(s) 32, 87
BsiSI CCGG 1 cut(s) 519
BslFI GGGAC 1 cut(s) 527
BsmAI GTCTC 2 cut(s) 782, 804
BsmFI GGGAC 1 cut(s) 527
BsnI GGCC 2 cut(s) 338, 612
Bso31I GGTCTC 1 cut(s) 804
Bsp1286I GDGCHC 2 cut(s) 32, 87
Bsp143I GATC 2 cut(s) 103, 181
BspACI CCGC 6 cut(s) 12, 18, 133, 272, 332, 335
BspANI GGCC 2 cut(s) 338, 612
BspCNI CTCAG 5 cut(s) 126, 201, 268, 667, 712
BspFNI CGCG 1 cut(s) 204
BspLI GGNNCC 3 cut(s) 318, 425, 766
BspMI ACCTGC 1 cut(s) 136
BspQI GCTCTTC 1 cut(s) 880
BspT107I GGYRCC 1 cut(s) 316
BspTNI GGTCTC 1 cut(s) 804
BsrDI GCAATG 2 cut(s) 577, 897
BssECI CCNNGG 1 cut(s) 768
BssMI GATC 2 cut(s) 103, 181
BssNI GRCGYC 1 cut(s) 317
BssSI CACGAG 1 cut(s) 801
Bst2BI CACGAG 1 cut(s) 801
Bst2UI CCWGG 2 cut(s) 706, 769
Bst4CI ACNGT 2 cut(s) 437, 608
Bst6I CTCTTC 2 cut(s) 297, 880
BstACI GRCGYC 1 cut(s) 317
BstAPI GCANNNNNTGC 1 cut(s) 455
BstBAI YACGTR 1 cut(s) 82
BstC8I GCNNGC 6 cut(s) 68, 133, 137, 206, 297, 456
BstDEI CTNAG 7 cut(s) 88, 113, 209, 276, 395, 675, 720
BstF5I GGATG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 204
BstH2I RGCGCY 1 cut(s) 320
BstHHI GCGC 5 cut(s) 72, 204, 224, 319, 449
BstKTI GATC 2 cut(s) 106, 184
BstMAI GTCTC 2 cut(s) 782, 804
BstMBI GATC 2 cut(s) 103, 181
BstMCI CGRYCG 1 cut(s) 339
BstMWI GCNNNNNNNGC 8 cut(s) 11, 14, 20, 199, 269, 323, 332, 455
BstNI CCWGG 2 cut(s) 706, 769
BstNSI RCATGY 2 cut(s) 70, 139
BstSCI CCNGG 2 cut(s) 704, 767
BstSLI GKGCMC 1 cut(s) 87
BstUI CGCG 1 cut(s) 204
BstV1I GCAGC 2 cut(s) 26, 32
BstXI CCANNNNNNTGG 1 cut(s) 749
BstZI CGGCCG 1 cut(s) 336
BsuRI GGCC 2 cut(s) 338, 612
BtrI CACGTC 1 cut(s) 235
BtsCI GGATG 1 cut(s) 48
BtsI GCAGTG 2 cut(s) 188, 562
BtsIMutI CAGTG 4 cut(s) 188, 442, 562, 613
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 6 cut(s) 68, 133, 137, 206, 297, 456
CaiI CAGNNNCTG 2 cut(s) 190, 674
CfoI GCGC 5 cut(s) 72, 204, 224, 319, 449
Csp6I GTAC 2 cut(s) 604, 679
CviAII CATG 5 cut(s) 25, 67, 101, 136, 171
CviQI GTAC 2 cut(s) 604, 679
DdeI CTNAG 7 cut(s) 88, 113, 209, 276, 395, 675, 720
DinI GGCGCC 1 cut(s) 318
DpnI GATC 2 cut(s) 105, 183
DpnII GATC 2 cut(s) 103, 181
DrdI GACNNNNNNGTC 1 cut(s) 796
DseDI GACNNNNNNGTC 1 cut(s) 796
EaeI YGGCCR 2 cut(s) 336, 610
EagI CGGCCG 1 cut(s) 336
Eam1104I CTCTTC 2 cut(s) 297, 880
EarI CTCTTC 2 cut(s) 297, 880
Ecl136II GAGCTC 1 cut(s) 30
EclXI CGGCCG 1 cut(s) 336
Eco24I GRGCYC 1 cut(s) 32
Eco31I GGTCTC 1 cut(s) 804
Eco52I CGGCCG 1 cut(s) 336
Eco53kI GAGCTC 1 cut(s) 30
Eco57I CTGAAG 2 cut(s) 321, 348
Eco72I CACGTG 1 cut(s) 82
EcoICRI GAGCTC 1 cut(s) 30
EcoRII CCWGG 2 cut(s) 704, 767
EcoT22I ATGCAT 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 32
EgeI GGCGCC 1 cut(s) 318
EheI GGCGCC 1 cut(s) 318
FaeI CATG 5 cut(s) 28, 70, 104, 139, 174
FalI AAGNNNNNCTT 2 cut(s) 401, 433
FaqI GGGAC 1 cut(s) 527
FatI CATG 5 cut(s) 24, 66, 100, 135, 170
FauI CCCGC 1 cut(s) 140
Fnu4HI GCNGC 7 cut(s) 6, 15, 18, 21, 273, 333, 336
FokI GGATG 1 cut(s) 35
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 7 cut(s) 6, 15, 18, 21, 273, 333, 336
FspBI CTAG 4 cut(s) 198, 645, 863, 878
GlaI GCGC 5 cut(s) 71, 203, 223, 318, 448
GluI GCNGC 7 cut(s) 6, 15, 18, 21, 273, 333, 336
GsaI CCCAGC 1 cut(s) 462
HaeII RGCGCY 1 cut(s) 320
HaeIII GGCC 2 cut(s) 338, 612
HapII CCGG 1 cut(s) 519
HhaI GCGC 5 cut(s) 72, 204, 224, 319, 449
Hin1I GRCGYC 1 cut(s) 317
Hin1II CATG 5 cut(s) 28, 70, 104, 139, 174
Hin6I GCGC 5 cut(s) 70, 202, 222, 317, 447
HinP1I GCGC 5 cut(s) 70, 202, 222, 317, 447
HincII GTYRAC 2 cut(s) 442, 628
HindII GTYRAC 2 cut(s) 442, 628
HindIII AAGCTT 2 cut(s) 410, 901
HinfI GANTC 2 cut(s) 117, 813
HpaI GTTAAC 1 cut(s) 628
HpaII CCGG 1 cut(s) 519
HphI GGTGA 4 cut(s) 89, 101, 374, 386
Hpy166II GTNNAC 5 cut(s) 85, 232, 403, 442, 628
Hpy188I TCNGA 3 cut(s) 116, 637, 721
Hpy188III TCNNGA 5 cut(s) 470, 485, 590, 668, 863
Hpy8I GTNNAC 5 cut(s) 85, 232, 403, 442, 628
Hpy99I CGWCG 3 cut(s) 151, 154, 157
HpyAV CCTTC 4 cut(s) 54, 437, 789, 905
HpyCH4III ACNGT 2 cut(s) 437, 608
HpyCH4IV ACGT 2 cut(s) 81, 234
HpyCH4V TGCA 5 cut(s) 66, 85, 479, 539, 570
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 14, 20, 199, 269, 323, 332, 455
HpyF3I CTNAG 7 cut(s) 88, 113, 209, 276, 395, 675, 720
HpySE526I ACGT 2 cut(s) 81, 234
Hsp92I GRCGYC 1 cut(s) 317
Hsp92II CATG 5 cut(s) 28, 70, 104, 139, 174
HspAI GCGC 5 cut(s) 70, 202, 222, 317, 447
KasI GGCGCC 1 cut(s) 316
KspAI GTTAAC 1 cut(s) 628
Kzo9I GATC 2 cut(s) 103, 181
LguI GCTCTTC 1 cut(s) 880
LmnI GCTCC 2 cut(s) 77, 764
Lsp1109I GCAGC 2 cut(s) 26, 32
MaeI CTAG 4 cut(s) 198, 645, 863, 878
MaeII ACGT 2 cut(s) 81, 234
MaeIII GTNAC 2 cut(s) 241, 544
MalI GATC 2 cut(s) 105, 183
MboI GATC 2 cut(s) 103, 181
MboII GAAGA 6 cut(s) 98, 269, 314, 534, 575, 897
MhlI GDGCHC 2 cut(s) 32, 87
MluCI AATT 3 cut(s) 465, 579, 697
Mly113I GGCGCC 1 cut(s) 317
MmeI TCCRAC 2 cut(s) 349, 742
Mph1103I ATGCAT 1 cut(s) 68
MroXI GAANNNNTTC 1 cut(s) 919
MseI TTAA 1 cut(s) 627
MslI CAYNNNNRTG 1 cut(s) 171
MspI CCGG 1 cut(s) 519
MspR9I CCNGG 2 cut(s) 706, 769
MvaI CCWGG 2 cut(s) 706, 769
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 8 cut(s) 11, 14, 20, 199, 269, 323, 332, 455
NarI GGCGCC 1 cut(s) 317
NdeII GATC 2 cut(s) 103, 181
NlaIII CATG 5 cut(s) 28, 70, 104, 139, 174
NlaIV GGNNCC 3 cut(s) 318, 425, 766
NmuCI GTSAC 2 cut(s) 241, 544
NsiI ATGCAT 1 cut(s) 68
NspI RCATGY 2 cut(s) 70, 139
PaeI GCATGC 2 cut(s) 70, 139
PaqCI CACCTGC 1 cut(s) 136
PciSI GCTCTTC 1 cut(s) 880
PdmI GAANNNNTTC 1 cut(s) 919
PfeI GAWTC 2 cut(s) 117, 813
PkrI GCNGC 7 cut(s) 7, 16, 19, 22, 274, 334, 337
PluTI GGCGCC 1 cut(s) 320
PmaCI CACGTG 1 cut(s) 82
PmlI CACGTG 1 cut(s) 82
Ppu21I YACGTR 1 cut(s) 82
Psp124BI GAGCTC 1 cut(s) 32
Psp6I CCWGG 2 cut(s) 704, 767
PspCI CACGTG 1 cut(s) 82
PspFI CCCAGC 1 cut(s) 458
PspGI CCWGG 2 cut(s) 704, 767
PspN4I GGNNCC 3 cut(s) 318, 425, 766
PsrI GAACNNNNNNTAC 2 cut(s) 416, 448
PstNI CAGNNNCTG 2 cut(s) 190, 674
RsaI GTAC 2 cut(s) 605, 680
RsaNI GTAC 2 cut(s) 604, 679
RseI CAYNNNNRTG 1 cut(s) 171
SacI GAGCTC 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 880
SaqAI TTAA 1 cut(s) 627
SatI GCNGC 7 cut(s) 6, 15, 18, 21, 273, 333, 336
Sau3AI GATC 2 cut(s) 103, 181
ScrFI CCNGG 2 cut(s) 706, 769
SduI GDGCHC 2 cut(s) 32, 87
SfoI GGCGCC 1 cut(s) 318
SmiMI CAYNNNNRTG 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 619
SmoI CTYRAG 1 cut(s) 619
SphI GCATGC 2 cut(s) 70, 139
Sse9I AATT 3 cut(s) 465, 579, 697
SsiI CCGC 6 cut(s) 12, 18, 133, 272, 332, 335
SspDI GGCGCC 1 cut(s) 316
SspMI CTAG 4 cut(s) 198, 645, 863, 878
SstI GAGCTC 1 cut(s) 32
StyD4I CCNGG 2 cut(s) 704, 767
TaaI ACNGT 2 cut(s) 437, 608
TaiI ACGT 2 cut(s) 84, 237
TaqI TCGA 2 cut(s) 350, 383
TasI AATT 3 cut(s) 465, 579, 697
TatI WGTACW 2 cut(s) 603, 678
TauI GCSGC 4 cut(s) 20, 275, 335, 338
TfiI GAWTC 2 cut(s) 117, 813
Tru1I TTAA 1 cut(s) 627
Tru9I TTAA 1 cut(s) 627
TscAI CASTG 4 cut(s) 195, 442, 562, 613
TseFI GTSAC 2 cut(s) 241, 544
TseI GCWGC 3 cut(s) 5, 14, 20
Tsp45I GTSAC 2 cut(s) 241, 544
TspDTI ATGAA 3 cut(s) 159, 357, 912
TspGWI ACGGA 1 cut(s) 260
TspRI CASTG 4 cut(s) 195, 442, 562, 613
VneI GTGCAC 1 cut(s) 83
XapI RAATTY 1 cut(s) 697
XbaI TCTAGA 1 cut(s) 862
XceI RCATGY 2 cut(s) 70, 139
XmnI GAANNNNTTC 1 cut(s) 919
XspI CTAG 4 cut(s) 198, 645, 863, 878
Zsp2I ATGCAT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.