Rw0G022530

kDa ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01047
OG0010171
Physical Location & Seq
Forward (+)
14237 .. 16665
2429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G022530.1

Sequence Viewer

Length: 897 bp
ATGGCTGCCACCGCAGCCGCAGCCATGAGCTCGTCTTTCTCTCCTTCCATCCACACCCTCAAATGCATGCGCTCCAATCACGTGCACTTAGCCCCTCACCATGATCTCACCTCAGAATCACAACACCTGCCCGCATGCTATCATCGTCATCAGCCACTGCTTTCTAGGCGCGTGCTGAGAATATCGTGCGCTTCTGTGGACGTGGCTGTGACGGAGGAGGTTGAAGAAGCTGTTGTAGCGGCTGAGGAGGAAAAAGAGAAGCAAGCTGAAGAGGAAGTAGTGGCGCCGATAGCTGAAGCGGCGGCCGATGAAGTTTCGAGTGAGGCTGGTGAGGTTGGAGGTGAAGTTTCGACGACTGATGAGCTTAGTGTGAACACGAAGCTTTACTTTGGGAACCTTCCTTACAGTGTTGACAGCGCACAGCTTGCTGGGATAATTCAGGACTATGCAAGTCCTGAACTCATTGAGGTTCTCTATCATAGGGACACCGGAAGAAGCAGAGGATTTGCATTTGTGACGATGAGCAGTGTTGAAGATTGCAATGCTGTAATTGAAAATCTTGATGGACGGGAGTACAGTGGCCGAACCTTGAGGGTTAACTTTTCGGACAAACCTAGAGCGAAAGAACCTCTATATCCAGAAACTGAGTACAAACTTTTTGTTGGGAATTTGTCCTGGTCAGCCACATCTGAGAGTTTGACAAAAGCTTTCCAAGAATATGGAAATGTGGTCGGAGCCAGGGTTCTATATGATGGGGAGACAGGAAGGTCTCGTGGCTATGGATTCGTATGCTTCTCAACAAAAGCAGAGATGGAAACTGCCTTACAATCTCTAGATGGAGTGGAACTAGAGGGAAGAGCAATGCGTGTAAGCTTGGCTGAAGGAAAGCGTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05130 map05130
Pfam Domains
Protein Families
RRM_1

Protein Analysis

298

Amino Acids

32.52

Weight (kDa)

4.94

Isoelectric Point (pI)

55.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 128 - 198 3.8e-13 RNA recognition motif
RRM_1 PF00076 219 - 288 4.4e-20 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 135
AasI GACNNNNNNGTC 1 cut(s) 766
Acc36I ACCTGC 1 cut(s) 135
AccB1I GGYRCC 1 cut(s) 283
AccII CGCG 1 cut(s) 171
AciI CCGC 6 cut(s) 12, 18, 132, 239, 299, 302
AcoI YGGCCR 2 cut(s) 303, 580
AcsI RAATTY 1 cut(s) 667
AcuI CTGAAG 2 cut(s) 288, 315
AcvI CACGTG 1 cut(s) 82
AcyI GRCGYC 1 cut(s) 284
AfaI GTAC 2 cut(s) 575, 650
AgsI TTSAA 3 cut(s) 224, 533, 554
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 2 cut(s) 674, 737
AloI GAACNNNNNNTCC 2 cut(s) 726, 758
AluBI AGCT 9 cut(s) 30, 230, 266, 293, 364, 382, 424, 707, 873
AluI AGCT 9 cut(s) 30, 230, 266, 293, 364, 382, 424, 707, 873
Alw21I GWGCWC 2 cut(s) 32, 87
Alw26I GTCTC 2 cut(s) 752, 774
Alw44I GTGCAC 1 cut(s) 83
AlwNI CAGNNNCTG 2 cut(s) 157, 644
AoxI GGCC 2 cut(s) 303, 580
ApaLI GTGCAC 1 cut(s) 83
ApeKI GCWGC 3 cut(s) 5, 14, 20
ApoI RAATTY 1 cut(s) 667
Asp700I GAANNNNTTC 1 cut(s) 889
AspLEI GCGC 5 cut(s) 72, 171, 191, 286, 419
AsuHPI GGTGA 4 cut(s) 89, 100, 341, 353
BaeGI GKGCMC 1 cut(s) 87
BanI GGYRCC 1 cut(s) 283
BanII GRGCYC 1 cut(s) 32
BauI CACGAG 1 cut(s) 771
BbrPI CACGTG 1 cut(s) 82
Bbv12I GWGCWC 2 cut(s) 32, 87
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 2 cut(s) 26, 32
BccI CCATC 5 cut(s) 56, 557, 746, 805, 830
BciT130I CCWGG 2 cut(s) 676, 739
BcoDI GTCTC 2 cut(s) 752, 774
BfaI CTAG 4 cut(s) 165, 615, 833, 848
BfoI RGCGCY 1 cut(s) 287
BfuAI ACCTGC 1 cut(s) 135
BisI GCNGC 7 cut(s) 6, 15, 18, 21, 240, 300, 303
BlsI GCNGC 7 cut(s) 7, 16, 19, 22, 241, 301, 304
Bme1390I CCNGG 2 cut(s) 676, 739
BmgBI CACGTC 1 cut(s) 202
BmiI GGNNCC 3 cut(s) 285, 395, 736
BmrFI CCNGG 2 cut(s) 676, 739
Bpu10I CCTNAGC 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 610
BsaAI YACGTR 1 cut(s) 82
BsaHI GRCGYC 1 cut(s) 284
BsaI GGTCTC 1 cut(s) 774
BsaJI CCNNGG 1 cut(s) 738
BsaWI WCCGGW 1 cut(s) 488
BsaXI ACNNNNNCTCC 4 cut(s) 330, 360, 726, 756
Bse3DI GCAATG 2 cut(s) 547, 867
BseBI CCWGG 2 cut(s) 676, 739
BseDI CCNNGG 1 cut(s) 738
BseGI GGATG 1 cut(s) 48
BseMI GCAATG 2 cut(s) 547, 867
BseMII CTCAG 5 cut(s) 126, 167, 234, 636, 681
BseRI GAGGAG 2 cut(s) 230, 260
BseSI GKGCMC 1 cut(s) 87
BseX3I CGGCCG 1 cut(s) 303
BseXI GCAGC 2 cut(s) 26, 32
BseYI CCCAGC 1 cut(s) 428
Bsh1236I CGCG 1 cut(s) 171
Bsh1285I CGRYCG 1 cut(s) 306
BshFI GGCC 2 cut(s) 305, 582
BshNI GGYRCC 1 cut(s) 283
BsiEI CGRYCG 1 cut(s) 306
BsiHKAI GWGCWC 2 cut(s) 32, 87
BsiSI CCGG 1 cut(s) 489
BslFI GGGAC 1 cut(s) 497
BsmAI GTCTC 2 cut(s) 752, 774
BsmFI GGGAC 1 cut(s) 497
BsnI GGCC 2 cut(s) 305, 582
Bso31I GGTCTC 1 cut(s) 774
Bsp1286I GDGCHC 2 cut(s) 32, 87
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 6 cut(s) 12, 18, 132, 239, 299, 302
BspANI GGCC 2 cut(s) 305, 582
BspCNI CTCAG 5 cut(s) 125, 168, 235, 637, 682
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 3 cut(s) 285, 395, 736
BspMI ACCTGC 1 cut(s) 135
BspQI GCTCTTC 1 cut(s) 850
BspT107I GGYRCC 1 cut(s) 283
BspTNI GGTCTC 1 cut(s) 774
BsrDI GCAATG 2 cut(s) 547, 867
BssECI CCNNGG 1 cut(s) 738
BssMI GATC 1 cut(s) 103
BssNI GRCGYC 1 cut(s) 284
BssSI CACGAG 1 cut(s) 771
Bst2BI CACGAG 1 cut(s) 771
Bst2UI CCWGG 2 cut(s) 676, 739
Bst4CI ACNGT 2 cut(s) 407, 578
Bst6I CTCTTC 2 cut(s) 264, 850
BstACI GRCGYC 1 cut(s) 284
BstAPI GCANNNNNTGC 1 cut(s) 425
BstBAI YACGTR 1 cut(s) 82
BstC8I GCNNGC 6 cut(s) 68, 132, 136, 173, 264, 426
BstDEI CTNAG 7 cut(s) 88, 112, 176, 243, 365, 645, 690
BstF5I GGATG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 171
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 5 cut(s) 72, 171, 191, 286, 419
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 2 cut(s) 752, 774
BstMBI GATC 1 cut(s) 103
BstMCI CGRYCG 1 cut(s) 306
BstMWI GCNNNNNNNGC 8 cut(s) 11, 14, 20, 166, 236, 290, 299, 425
BstNI CCWGG 2 cut(s) 676, 739
BstNSI RCATGY 2 cut(s) 70, 138
BstSCI CCNGG 2 cut(s) 674, 737
BstSLI GKGCMC 1 cut(s) 87
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 2 cut(s) 26, 32
BstXI CCANNNNNNTGG 1 cut(s) 719
BstZI CGGCCG 1 cut(s) 303
BsuRI GGCC 2 cut(s) 305, 582
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 1 cut(s) 48
BtsI GCAGTG 2 cut(s) 155, 532
BtsIMutI CAGTG 4 cut(s) 155, 412, 532, 583
BveI ACCTGC 1 cut(s) 135
Cac8I GCNNGC 6 cut(s) 68, 132, 136, 173, 264, 426
CaiI CAGNNNCTG 2 cut(s) 157, 644
CfoI GCGC 5 cut(s) 72, 171, 191, 286, 419
Csp6I GTAC 2 cut(s) 574, 649
CviAII CATG 4 cut(s) 25, 67, 101, 135
CviQI GTAC 2 cut(s) 574, 649
DdeI CTNAG 7 cut(s) 88, 112, 176, 243, 365, 645, 690
DinI GGCGCC 1 cut(s) 285
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
DrdI GACNNNNNNGTC 1 cut(s) 766
DseDI GACNNNNNNGTC 1 cut(s) 766
EaeI YGGCCR 2 cut(s) 303, 580
EagI CGGCCG 1 cut(s) 303
Eam1104I CTCTTC 2 cut(s) 264, 850
EarI CTCTTC 2 cut(s) 264, 850
Ecl136II GAGCTC 1 cut(s) 30
EclXI CGGCCG 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 32
Eco31I GGTCTC 1 cut(s) 774
Eco52I CGGCCG 1 cut(s) 303
Eco53kI GAGCTC 1 cut(s) 30
Eco57I CTGAAG 2 cut(s) 288, 315
Eco72I CACGTG 1 cut(s) 82
EcoICRI GAGCTC 1 cut(s) 30
EcoRII CCWGG 2 cut(s) 674, 737
EcoT22I ATGCAT 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 32
EgeI GGCGCC 1 cut(s) 285
EheI GGCGCC 1 cut(s) 285
FaeI CATG 4 cut(s) 28, 70, 104, 138
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FaqI GGGAC 1 cut(s) 497
FatI CATG 4 cut(s) 24, 66, 100, 134
FauI CCCGC 1 cut(s) 139
Fnu4HI GCNGC 7 cut(s) 6, 15, 18, 21, 240, 300, 303
FokI GGATG 1 cut(s) 35
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 7 cut(s) 6, 15, 18, 21, 240, 300, 303
FspBI CTAG 4 cut(s) 165, 615, 833, 848
GlaI GCGC 5 cut(s) 71, 170, 190, 285, 418
GluI GCNGC 7 cut(s) 6, 15, 18, 21, 240, 300, 303
GsaI CCCAGC 1 cut(s) 432
HaeII RGCGCY 1 cut(s) 287
HaeIII GGCC 2 cut(s) 305, 582
HapII CCGG 1 cut(s) 489
HhaI GCGC 5 cut(s) 72, 171, 191, 286, 419
Hin1I GRCGYC 1 cut(s) 284
Hin1II CATG 4 cut(s) 28, 70, 104, 138
Hin6I GCGC 5 cut(s) 70, 169, 189, 284, 417
HinP1I GCGC 5 cut(s) 70, 169, 189, 284, 417
HincII GTYRAC 2 cut(s) 412, 598
HindII GTYRAC 2 cut(s) 412, 598
HindIII AAGCTT 3 cut(s) 380, 705, 871
HinfI GANTC 2 cut(s) 116, 783
HpaI GTTAAC 1 cut(s) 598
HpaII CCGG 1 cut(s) 489
HphI GGTGA 4 cut(s) 89, 100, 341, 353
Hpy166II GTNNAC 5 cut(s) 85, 199, 373, 412, 598
Hpy188I TCNGA 4 cut(s) 115, 607, 691, 734
Hpy188III TCNNGA 5 cut(s) 440, 455, 560, 638, 833
Hpy8I GTNNAC 5 cut(s) 85, 199, 373, 412, 598
Hpy99I CGWCG 1 cut(s) 355
HpyAV CCTTC 4 cut(s) 54, 407, 759, 875
HpyCH4III ACNGT 2 cut(s) 407, 578
HpyCH4IV ACGT 2 cut(s) 81, 201
HpyCH4V TGCA 5 cut(s) 66, 85, 449, 509, 540
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 14, 20, 166, 236, 290, 299, 425
HpyF3I CTNAG 7 cut(s) 88, 112, 176, 243, 365, 645, 690
HpySE526I ACGT 2 cut(s) 81, 201
Hsp92I GRCGYC 1 cut(s) 284
Hsp92II CATG 4 cut(s) 28, 70, 104, 138
HspAI GCGC 5 cut(s) 70, 169, 189, 284, 417
KasI GGCGCC 1 cut(s) 283
KspAI GTTAAC 1 cut(s) 598
Kzo9I GATC 1 cut(s) 103
LguI GCTCTTC 1 cut(s) 850
LmnI GCTCC 2 cut(s) 77, 734
Lsp1109I GCAGC 2 cut(s) 26, 32
MaeI CTAG 4 cut(s) 165, 615, 833, 848
MaeII ACGT 2 cut(s) 81, 201
MaeIII GTNAC 2 cut(s) 208, 514
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 5 cut(s) 236, 281, 504, 545, 867
MhlI GDGCHC 2 cut(s) 32, 87
MluCI AATT 3 cut(s) 435, 549, 667
Mly113I GGCGCC 1 cut(s) 284
MmeI TCCRAC 2 cut(s) 316, 712
Mph1103I ATGCAT 1 cut(s) 68
MroXI GAANNNNTTC 1 cut(s) 889
MseI TTAA 1 cut(s) 597
MspI CCGG 1 cut(s) 489
MspR9I CCNGG 2 cut(s) 676, 739
MvaI CCWGG 2 cut(s) 676, 739
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 8 cut(s) 11, 14, 20, 166, 236, 290, 299, 425
NarI GGCGCC 1 cut(s) 284
NdeII GATC 1 cut(s) 103
NlaIII CATG 4 cut(s) 28, 70, 104, 138
NlaIV GGNNCC 3 cut(s) 285, 395, 736
NmuCI GTSAC 2 cut(s) 208, 514
NsiI ATGCAT 1 cut(s) 68
NspI RCATGY 2 cut(s) 70, 138
PaeI GCATGC 2 cut(s) 70, 138
PaqCI CACCTGC 1 cut(s) 135
PciSI GCTCTTC 1 cut(s) 850
PdmI GAANNNNTTC 1 cut(s) 889
PfeI GAWTC 2 cut(s) 116, 783
PkrI GCNGC 7 cut(s) 7, 16, 19, 22, 241, 301, 304
PluTI GGCGCC 1 cut(s) 287
PmaCI CACGTG 1 cut(s) 82
PmlI CACGTG 1 cut(s) 82
Ppu21I YACGTR 1 cut(s) 82
Psp124BI GAGCTC 1 cut(s) 32
Psp6I CCWGG 2 cut(s) 674, 737
PspCI CACGTG 1 cut(s) 82
PspFI CCCAGC 1 cut(s) 428
PspGI CCWGG 2 cut(s) 674, 737
PspN4I GGNNCC 3 cut(s) 285, 395, 736
PsrI GAACNNNNNNTAC 2 cut(s) 386, 418
PstNI CAGNNNCTG 2 cut(s) 157, 644
RsaI GTAC 2 cut(s) 575, 650
RsaNI GTAC 2 cut(s) 574, 649
SacI GAGCTC 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 850
SaqAI TTAA 1 cut(s) 597
SatI GCNGC 7 cut(s) 6, 15, 18, 21, 240, 300, 303
Sau3AI GATC 1 cut(s) 103
ScrFI CCNGG 2 cut(s) 676, 739
SduI GDGCHC 2 cut(s) 32, 87
SfoI GGCGCC 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 589
SmoI CTYRAG 1 cut(s) 589
SphI GCATGC 2 cut(s) 70, 138
Sse9I AATT 3 cut(s) 435, 549, 667
SsiI CCGC 6 cut(s) 12, 18, 132, 239, 299, 302
SspDI GGCGCC 1 cut(s) 283
SspMI CTAG 4 cut(s) 165, 615, 833, 848
SstI GAGCTC 1 cut(s) 32
StyD4I CCNGG 2 cut(s) 674, 737
TaaI ACNGT 2 cut(s) 407, 578
TaiI ACGT 2 cut(s) 84, 204
TaqI TCGA 2 cut(s) 317, 350
TasI AATT 3 cut(s) 435, 549, 667
TatI WGTACW 2 cut(s) 573, 648
TauI GCSGC 4 cut(s) 20, 242, 302, 305
TfiI GAWTC 2 cut(s) 116, 783
Tru1I TTAA 1 cut(s) 597
Tru9I TTAA 1 cut(s) 597
TscAI CASTG 4 cut(s) 162, 412, 532, 583
TseFI GTSAC 2 cut(s) 208, 514
TseI GCWGC 3 cut(s) 5, 14, 20
Tsp45I GTSAC 2 cut(s) 208, 514
TspDTI ATGAA 2 cut(s) 324, 882
TspGWI ACGGA 1 cut(s) 227
TspRI CASTG 4 cut(s) 162, 412, 532, 583
VneI GTGCAC 1 cut(s) 83
XapI RAATTY 1 cut(s) 667
XbaI TCTAGA 1 cut(s) 832
XceI RCATGY 2 cut(s) 70, 138
XmnI GAANNNNTTC 1 cut(s) 889
XspI CTAG 4 cut(s) 165, 615, 833, 848
Zsp2I ATGCAT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.