Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010171

Physical Location & Seq

Genomic Coordinates Forward (+)

3431594 .. 3434261

Gene Structure 2668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G048800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCTGCCTCTGCAGCTGCAGCCATGAGCTCATCTTTCTCACCCTCTATCTACACCGTCAAATGCCTACGATCATCCAATCAAATGTCCCCACTTGATCATCTCCACCTTAAAATGGCCCCTACCCGAATGCTTTCATCATCATCTCTATCAAACCCTTGTGCCATAGAACCCCTACTTTCGATCAATGCCGGTTCGAACAAGTTTCGGGTGCTGAGGGTAAGTACTGCCGTGGCTCAAGAAGAGGTGGCGGTGACTGATGAGATTGAGCAAGTGGCCTCATTGGCTGAGGAGGAGCAGCAGGAAGAAAAGAAAGCAGAGGAGCAGGTGGTGTCCGCAGGTGATGAAGAGTTGGGAGGAGAAGCGGCAGCTGAAGTTTCAGGTGGAGGAGATGAGGGTGAGGAGGCTGTTGCTGTGAACACAAAGCTTTACTTTGGGAACCTTCCTTATAGCGTTGACAGTGCACAGCTTGCTGGGATAATTCAGGACTATGGAAGTCCAGAGCTGATTGAGGTTCTCTATCATAGGGACACTGGAAAAAGCAGAGGATTCGCATTCGTTACAATGAGCACTGCTGAAGATTGCAATGCTGTCATTGAAAATCTTGATGGGCGTGAATTCATGGGGCGAACCTTGAGGGTGAACTTAGCGGACAAGCCAAGACCGAAAGTACCTCTATATCCTGAAACTGAGTTCAAGCTTTTTGTAGGGAATTTATCCTGGTCAGTCACATCTGAAAGCTTGACGAAAGCTTTTCAAGAATATGGAAATGTGGTTGGAGCCAGGGTGCTATATGATGGGGAGACAGGAAGGTCCCGTGGCTATGGATTTGTATGCTACTCAACGAAGTCAGAGATGGACACTGCCTTAGAATCTCTTGATGGAGCGGAACTAGAAGGAAGAGCACTGCGTGTAAGCTTGGCTGAAGGGAAACGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

314

Amino Acids

33.71

Weight (kDa)

4.68

Isoelectric Point (pI)

52.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60000 AT1G60000
fragaria_vesca	FvH4_4g04650 FvH4_4g04650
malus_domestica	MD16G1226600.v1.1
prunus_persica	Prupe.1G048800_v2.0.a1
pyrus_communis	pycom16g18970
rosa_chinensis	RchiOBHm_Chr4g0395451
rosa_laevigata	RLG00000009622
rosa_multiflora	Rmu_co8444787.1_g000001 Rmu_sc0004598.1_g000008 Rmu_sc0012715.1_g000001
rosa_roxburghii	Rroxscaffold_5G00340390
rosa_rugosa	Rorug03G0357200
rosa_samantha	Rh4AG059900 Rh4BG058500 Rh4CG064200 Rh4DG055100
rosa_wichuraiana	Rw0G003330 Rw0G022530 Rw4G004800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	316, 329
AasI	GACNNNNNNGTC	1 cut(s)	811
Acc36I	ACCTGC	2 cut(s)	316, 329
AccBSI	CCGCTC	1 cut(s)	887
AciI	CCGC	5 cut(s)	251, 336, 365, 650, 887
AclI	AACGTT	1 cut(s)	934
AcsI	RAATTY	2 cut(s)	617, 712
AcuI	CTGAAG	2 cut(s)	393, 597
AdeI	CACNNNGTG	1 cut(s)	911
AfaI	GTAC	2 cut(s)	226, 672
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	3 cut(s)	599, 697, 758
AjnI	CCWGG	2 cut(s)	719, 782
Alw21I	GWGCWC	4 cut(s)	32, 466, 572, 907
Alw26I	GTCTC	1 cut(s)	797
Alw44I	GTGCAC	1 cut(s)	462
AoxI	GGCC	2 cut(s)	117, 276
ApaLI	GTGCAC	1 cut(s)	462
ApeKI	GCWGC	6 cut(s)	5, 14, 17, 20, 298, 368
ApoI	RAATTY	2 cut(s)	617, 712
Asp700I	GAANNNNTTC	1 cut(s)	133
AspS9I	GGNCC	2 cut(s)	118, 813
AsuHPI	GGTGA	5 cut(s)	33, 265, 353, 410, 652
AsuII	TTCGAA	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	813
BaeGI	GKGCMC	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	32
Bbv12I	GWGCWC	4 cut(s)	32, 466, 572, 907
BbvCI	CCTCAGC	2 cut(s)	215, 288
BbvI	GCAGC	5 cut(s)	4, 26, 32, 310, 380
BccI	CCATC	4 cut(s)	602, 791, 850, 875
BceAI	ACGGC	1 cut(s)	215
BcgI	CGANNNNNNTGC	2 cut(s)	532, 566
BciT130I	CCWGG	2 cut(s)	721, 784
BclI	TGATCA	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	797
BfaI	CTAG	1 cut(s)	893
BfmI	CTRYAG	2 cut(s)	12, 18
BfuAI	ACCTGC	2 cut(s)	316, 329
BglI	GCCNNNNNGGC	1 cut(s)	284
BisI	GCNGC	7 cut(s)	6, 15, 18, 21, 299, 366, 369
BlsI	GCNGC	7 cut(s)	7, 16, 19, 22, 300, 367, 370
BmcAI	AGTACT	1 cut(s)	226
Bme1390I	CCNGG	2 cut(s)	721, 784
Bme18I	GGWCC	1 cut(s)	813
BmgT120I	GGNCC	2 cut(s)	118, 813
BmiI	GGNNCC	4 cut(s)	120, 440, 781, 815
BmrFI	CCNGG	2 cut(s)	721, 784
Bpu10I	CCTNAGC	2 cut(s)	215, 288
Bpu14I	TTCGAA	1 cut(s)	197
BpuEI	CTTGAG	2 cut(s)	222, 655
BsaJI	CCNNGG	3 cut(s)	231, 783, 817
BsaXI	ACNNNNNCTCC	2 cut(s)	771, 801
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	538
Bse3DI	GCAATG	1 cut(s)	592
BseBI	CCWGG	2 cut(s)	721, 784
BseDI	CCNNGG	3 cut(s)	231, 783, 817
BseGI	GGATG	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	592
BseMII	CTCAG	3 cut(s)	206, 279, 681
BseNI	ACTGG	1 cut(s)	538
BseRI	GAGGAG	6 cut(s)	305, 308, 335, 372, 402, 416
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	5 cut(s)	4, 26, 32, 310, 380
BseYI	CCCAGC	1 cut(s)	473
BshFI	GGCC	2 cut(s)	119, 278
BsiHKAI	GWGCWC	4 cut(s)	32, 466, 572, 907
BsiSI	CCGG	1 cut(s)	192
BslFI	GGGAC	3 cut(s)	73, 542, 799
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	797
BsmFI	GGGAC	3 cut(s)	73, 542, 799
BsmI	GAATGC	2 cut(s)	135, 554
BsnI	GGCC	2 cut(s)	119, 278
Bsp119I	TTCGAA	1 cut(s)	197
Bsp1286I	GDGCHC	4 cut(s)	32, 466, 572, 907
Bsp143I	GATC	3 cut(s)	71, 97, 183
BspACI	CCGC	5 cut(s)	251, 336, 365, 650, 887
BspANI	GGCC	2 cut(s)	119, 278
BspCNI	CTCAG	3 cut(s)	207, 280, 682
BspLI	GGNNCC	4 cut(s)	120, 440, 781, 815
BspMAI	CTGCAG	2 cut(s)	16, 22
BspMI	ACCTGC	2 cut(s)	316, 329
BspQI	GCTCTTC	1 cut(s)	895
BspT104I	TTCGAA	1 cut(s)	197
BsrBI	CCGCTC	1 cut(s)	887
BsrDI	GCAATG	1 cut(s)	592
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	538
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	3 cut(s)	231, 783, 817
BssMI	GATC	3 cut(s)	71, 97, 183
Bst2UI	CCWGG	2 cut(s)	721, 784
Bst4CI	ACNGT	2 cut(s)	58, 461
Bst6I	CTCTTC	3 cut(s)	237, 342, 895
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstBI	TTCGAA	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	471
BstDEI	CTNAG	5 cut(s)	215, 288, 646, 690, 868
BstDSI	CCRYGG	2 cut(s)	231, 817
BstF5I	GGATG	1 cut(s)	74
BstKTI	GATC	3 cut(s)	74, 100, 186
BstMAI	GTCTC	1 cut(s)	797
BstMBI	GATC	3 cut(s)	71, 97, 183
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 14, 20, 284, 470
BstNI	CCWGG	2 cut(s)	721, 784
BstSCI	CCNGG	2 cut(s)	719, 782
BstSFI	CTRYAG	2 cut(s)	12, 18
BstSLI	GKGCMC	1 cut(s)	466
BstV1I	GCAGC	5 cut(s)	4, 26, 32, 310, 380
BsuRI	GGCC	2 cut(s)	119, 278
BtgI	CCRYGG	2 cut(s)	231, 817
BtsCI	GGATG	1 cut(s)	74
BtsI	GCAGTG	3 cut(s)	570, 861, 905
BtsIMutI	CAGTG	5 cut(s)	466, 531, 570, 861, 905
BveI	ACCTGC	2 cut(s)	316, 329
Cac8I	GCNNGC	1 cut(s)	471
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	2 cut(s)	118, 813
Csp6I	GTAC	2 cut(s)	225, 671
CviAII	CATG	2 cut(s)	25, 622
CviQI	GTAC	2 cut(s)	225, 671
DdeI	CTNAG	5 cut(s)	215, 288, 646, 690, 868
DpnI	GATC	3 cut(s)	73, 99, 185
DpnII	GATC	3 cut(s)	71, 97, 183
DraIII	CACNNNGTG	1 cut(s)	911
DrdI	GACNNNNNNGTC	1 cut(s)	811
DseDI	GACNNNNNNGTC	1 cut(s)	811
Eam1104I	CTCTTC	3 cut(s)	237, 342, 895
EarI	CTCTTC	3 cut(s)	237, 342, 895
Ecl136II	GAGCTC	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	813
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	2 cut(s)	393, 597
EcoICRI	GAGCTC	1 cut(s)	30
EcoO109I	RGGNCCY	1 cut(s)	813
EcoRI	GAATTC	1 cut(s)	617
EcoRII	CCWGG	2 cut(s)	719, 782
EcoT38I	GRGCYC	1 cut(s)	32
FaeI	CATG	2 cut(s)	28, 625
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FaqI	GGGAC	3 cut(s)	73, 542, 799
FatI	CATG	2 cut(s)	24, 621
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	7 cut(s)	6, 15, 18, 21, 299, 366, 369
FokI	GGATG	1 cut(s)	61
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	7 cut(s)	6, 15, 18, 21, 299, 366, 369
FspBI	CTAG	1 cut(s)	893
GluI	GCNGC	7 cut(s)	6, 15, 18, 21, 299, 366, 369
GsaI	CCCAGC	1 cut(s)	477
HaeIII	GGCC	2 cut(s)	119, 278
HapII	CCGG	1 cut(s)	192
Hin1II	CATG	2 cut(s)	28, 625
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HindIII	AAGCTT	5 cut(s)	425, 698, 739, 750, 916
HinfI	GANTC	2 cut(s)	549, 872
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	5 cut(s)	33, 265, 353, 410, 652
Hpy166II	GTNNAC	4 cut(s)	418, 457, 464, 643
Hpy188I	TCNGA	2 cut(s)	736, 853
Hpy188III	TCNNGA	7 cut(s)	239, 485, 500, 605, 683, 758, 878
Hpy8I	GTNNAC	4 cut(s)	418, 457, 464, 643
HpyAV	CCTTC	4 cut(s)	452, 804, 890, 920
HpyCH4III	ACNGT	2 cut(s)	58, 461
HpyCH4IV	ACGT	1 cut(s)	934
HpyCH4V	TGCA	4 cut(s)	14, 20, 464, 585
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 14, 20, 284, 470
HpyF3I	CTNAG	5 cut(s)	215, 288, 646, 690, 868
HpySE526I	ACGT	1 cut(s)	934
Hsp92II	CATG	2 cut(s)	28, 625
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	3 cut(s)	71, 97, 183
LguI	GCTCTTC	1 cut(s)	895
LmnI	GCTCC	4 cut(s)	295, 322, 779, 884
Lsp1109I	GCAGC	5 cut(s)	4, 26, 32, 310, 380
MaeI	CTAG	1 cut(s)	893
MaeII	ACGT	1 cut(s)	934
MaeIII	GTNAC	3 cut(s)	253, 559, 727
MalI	GATC	3 cut(s)	73, 99, 185
MbiI	CCGCTC	1 cut(s)	887
MboI	GATC	3 cut(s)	71, 97, 183
MboII	GAAGA	5 cut(s)	254, 317, 359, 590, 912
MhlI	GDGCHC	4 cut(s)	32, 466, 572, 907
MluCI	AATT	3 cut(s)	480, 617, 712
MmeI	TCCRAC	1 cut(s)	757
MroXI	GAANNNNTTC	1 cut(s)	133
MseI	TTAA	1 cut(s)	111
MspA1I	CMGCKG	2 cut(s)	17, 371
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	2 cut(s)	721, 784
Mva1269I	GAATGC	2 cut(s)	135, 554
MvaI	CCWGG	2 cut(s)	721, 784
MwoI	GCNNNNNNNGC	5 cut(s)	11, 14, 20, 284, 470
NdeII	GATC	3 cut(s)	71, 97, 183
NlaIII	CATG	2 cut(s)	28, 625
NlaIV	GGNNCC	4 cut(s)	120, 440, 781, 815
NmuCI	GTSAC	2 cut(s)	253, 727
NspV	TTCGAA	1 cut(s)	197
PaqCI	CACCTGC	2 cut(s)	316, 329
PciSI	GCTCTTC	1 cut(s)	895
PctI	GAATGC	2 cut(s)	135, 554
PdmI	GAANNNNTTC	1 cut(s)	133
PfeI	GAWTC	2 cut(s)	549, 872
PkrI	GCNGC	7 cut(s)	7, 16, 19, 22, 300, 367, 370
PpuMI	RGGWCCY	1 cut(s)	813
Psp124BI	GAGCTC	1 cut(s)	32
Psp1406I	AACGTT	1 cut(s)	934
Psp5II	RGGWCCY	1 cut(s)	813
Psp6I	CCWGG	2 cut(s)	719, 782
PspFI	CCCAGC	1 cut(s)	473
PspGI	CCWGG	2 cut(s)	719, 782
PspN4I	GGNNCC	4 cut(s)	120, 440, 781, 815
PspPI	GGNCC	2 cut(s)	118, 813
PspPPI	RGGWCCY	1 cut(s)	813
PstI	CTGCAG	2 cut(s)	16, 22
PvuII	CAGCTG	2 cut(s)	17, 371
RsaI	GTAC	2 cut(s)	226, 672
RsaNI	GTAC	2 cut(s)	225, 671
SacI	GAGCTC	1 cut(s)	32
SapI	GCTCTTC	1 cut(s)	895
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	7 cut(s)	6, 15, 18, 21, 299, 366, 369
Sau3AI	GATC	3 cut(s)	71, 97, 183
Sau96I	GGNCC	2 cut(s)	118, 813
ScaI	AGTACT	1 cut(s)	226
ScrFI	CCNGG	2 cut(s)	721, 784
SduI	GDGCHC	4 cut(s)	32, 466, 572, 907
SfcI	CTRYAG	2 cut(s)	12, 18
SfuI	TTCGAA	1 cut(s)	197
SinI	GGWCC	1 cut(s)	813
SmlI	CTYRAG	2 cut(s)	237, 634
SmoI	CTYRAG	2 cut(s)	237, 634
Sse9I	AATT	3 cut(s)	480, 617, 712
SsiI	CCGC	5 cut(s)	251, 336, 365, 650, 887
SspMI	CTAG	1 cut(s)	893
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	2 cut(s)	719, 782
TaaI	ACNGT	2 cut(s)	58, 461
TaiI	ACGT	1 cut(s)	937
TaqI	TCGA	2 cut(s)	182, 197
TaqII	GACCGA	1 cut(s)	679
TasI	AATT	3 cut(s)	480, 617, 712
TatI	WGTACW	1 cut(s)	224
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	2 cut(s)	549, 872
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	5 cut(s)	466, 538, 577, 868, 912
TseFI	GTSAC	2 cut(s)	253, 727
TseI	GCWGC	6 cut(s)	5, 14, 17, 20, 298, 368
Tsp45I	GTSAC	2 cut(s)	253, 727
TspDTI	ATGAA	4 cut(s)	126, 360, 610, 927
TspRI	CASTG	5 cut(s)	466, 538, 577, 868, 912
VneI	GTGCAC	1 cut(s)	462
VpaK11BI	GGWCC	1 cut(s)	813
XapI	RAATTY	2 cut(s)	617, 712
XmnI	GAANNNNTTC	1 cut(s)	133
XspI	CTAG	1 cut(s)	893
ZrmI	AGTACT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.