AT1G61105

TMV resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017097
Physical Location & Seq
Reverse (-)
22513585 .. 22514492
908 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G61105.1

Sequence Viewer

Length: 567 bp
ATGCAACGTTTGTTAACACCTTGCTCAAAAATCGCATACACAACAAGATACATTGCAAATCCAACCCTACCTTACCCAAACCCATGTGATATTTTCATCAATCATCGTGGGATCGATACCAAGAAGACTATTTCAGGCCTACTATATGATTGTTTCACTAGACAACGTTTGACTGCTTTCTTGGATAGTAAGAGTTTAAAGCCTGGAGACAGGCTTTTTGTCGAGATCGACATGGCAATCAAAGCATGCGGGGTTGGTATTGCGGTTTTCTCTCCTCGTTACTGTGACTCTTACTTCTGTCTCCATGAACTCGCATTGCTCGTGAAGAACAAGAAAAGAGTCATCCCTATATTTTGCGATGTCAAGCCATCGGAACTCTGCGTAAAAGACGACAAGACACGTCCAGCTGCCGAGATCCGGAGGTTTCAATTGGCTCTCGAGGAAGCAAAATATACCGTAGGACTCACGTTTGATACATCTAATGGAGACTGGTCAGAGTTCTTGGCCATGGCATCGGATGCAGTCACGAAGAACTTGTTAGAAGTTGAAGAAAGGATTGGAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIR TIR_2

Protein Analysis

188

Amino Acids

21.28

Weight (kDa)

8.07

Isoelectric Point (pI)

31.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 30 - 125 1e-12 TIR domain
TIR_2 PF13676 31 - 124 1e-12 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017097)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61105
fragaria_vesca FvH4_3g04640
malus_domestica MD10G1299700.v1.1
prunus_persica Prupe.4G041100_v2.0.a1
rosa_laevigata RLG00000031470
rosa_multiflora Rmu_co8469441.1_g000001 Rmu_ssc0000182.1_g000021
rosa_rugosa Rorug04G0428700
rosa_samantha Rh5AG056600 Rh5BG054000 Rh5CG063700 Rh5DG053000
rosa_wichuraiana Rw5G005380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 417
AciI CCGC 2 cut(s) 249, 263
AclI AACGTT 2 cut(s) 7, 166
AclWI GGATC 2 cut(s) 119, 409
AcoI YGGCCR 1 cut(s) 504
AfiI CCNNNNNNNGG 1 cut(s) 417
AflIII ACRYGT 1 cut(s) 398
AgsI TTSAA 2 cut(s) 428, 548
AjiI CACGTC 1 cut(s) 401
AjnI CCWGG 1 cut(s) 202
AjuI GAANNNNNNNTTGG 1 cut(s) 540
AluBI AGCT 1 cut(s) 407
AluI AGCT 1 cut(s) 407
Alw26I GTCTC 3 cut(s) 201, 305, 480
AlwI GGATC 2 cut(s) 119, 409
Ama87I CYCGRG 1 cut(s) 437
Aor13HI TCCGGA 1 cut(s) 417
AoxI GGCC 2 cut(s) 136, 504
ApeKI GCWGC 1 cut(s) 407
ArsI GACNNNNNNTTYG 2 cut(s) 200, 232
AvaI CYCGRG 1 cut(s) 437
BalI TGGCCA 1 cut(s) 506
BauI CACGAG 1 cut(s) 320
BbsI GAAGAC 1 cut(s) 131
BbvI GCAGC 1 cut(s) 394
BccI CCATC 1 cut(s) 376
BciT130I CCWGG 1 cut(s) 204
BcoDI GTCTC 3 cut(s) 201, 305, 480
BfaI CTAG 1 cut(s) 159
BisI GCNGC 1 cut(s) 408
BlsI GCNGC 1 cut(s) 409
Bme1390I CCNGG 1 cut(s) 204
BmeT110I CYCGRG 1 cut(s) 437
BmgBI CACGTC 1 cut(s) 401
BmrFI CCNGG 1 cut(s) 204
BmsI GCATC 2 cut(s) 508, 521
BpiI GAAGAC 1 cut(s) 131
BpmI CTGGAG 1 cut(s) 225
Bsa29I ATCGAT 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 507
BsaWI WCCGGW 1 cut(s) 417
Bsc4I CCNNNNNNNGG 1 cut(s) 417
Bse1I ACTGG 1 cut(s) 494
Bse3DI GCAATG 2 cut(s) 51, 314
BseAI TCCGGA 1 cut(s) 417
BseBI CCWGG 1 cut(s) 204
BseCI ATCGAT 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 507
BseGI GGATG 2 cut(s) 342, 523
BseLI CCNNNNNNNGG 1 cut(s) 417
BseMI GCAATG 2 cut(s) 51, 314
BseNI ACTGG 1 cut(s) 494
BseRI GAGGAG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 394
BshFI GGCC 2 cut(s) 138, 506
BshVI ATCGAT 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 437
BsiSI CCGG 1 cut(s) 418
BslI CCNNNNNNNGG 1 cut(s) 417
BsmAI GTCTC 3 cut(s) 201, 305, 480
BsnI GGCC 2 cut(s) 138, 506
BsoBI CYCGRG 1 cut(s) 437
Bsp13I TCCGGA 1 cut(s) 417
Bsp143I GATC 3 cut(s) 111, 225, 414
Bsp19I CCATGG 1 cut(s) 507
BspACI CCGC 2 cut(s) 249, 263
BspANI GGCC 2 cut(s) 138, 506
BspDI ATCGAT 1 cut(s) 114
BspEI TCCGGA 1 cut(s) 417
BspPI GGATC 2 cut(s) 119, 409
BsrDI GCAATG 2 cut(s) 51, 314
BsrI ACTGG 1 cut(s) 494
BssECI CCNNGG 1 cut(s) 507
BssMI GATC 3 cut(s) 111, 225, 414
BssSI CACGAG 1 cut(s) 320
BssT1I CCWWGG 1 cut(s) 507
Bst2BI CACGAG 1 cut(s) 320
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 2 cut(s) 284, 457
BstAPI GCANNNNNTGC 1 cut(s) 518
BstC8I GCNNGC 1 cut(s) 247
BstDSI CCRYGG 1 cut(s) 507
BstF5I GGATG 2 cut(s) 342, 523
BstKTI GATC 3 cut(s) 114, 228, 417
BstMAI GTCTC 3 cut(s) 201, 305, 480
BstMBI GATC 3 cut(s) 111, 225, 414
BstMWI GCNNNNNNNGC 2 cut(s) 242, 518
BstNI CCWGG 1 cut(s) 204
BstNSI RCATGY 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 394
BstV2I GAAGAC 1 cut(s) 131
BstX2I RGATCY 1 cut(s) 414
BstYI RGATCY 1 cut(s) 414
Bsu15I ATCGAT 1 cut(s) 114
BsuRI GGCC 2 cut(s) 138, 506
BsuTUI ATCGAT 1 cut(s) 114
BtgI CCRYGG 1 cut(s) 507
BtgZI GCGATG 1 cut(s) 372
BtrI CACGTC 1 cut(s) 401
BtsCI GGATG 2 cut(s) 342, 523
Cac8I GCNNGC 1 cut(s) 247
ClaI ATCGAT 1 cut(s) 114
CspCI CAANNNNNGTGG 2 cut(s) 88, 123
CviAII CATG 5 cut(s) 84, 232, 246, 305, 508
CviJI RGCY 7 cut(s) 138, 202, 214, 367, 407, 434, 506
CviKI_1 RGCY 7 cut(s) 138, 202, 214, 367, 407, 434, 506
DpnI GATC 3 cut(s) 113, 227, 416
DpnII GATC 3 cut(s) 111, 225, 414
DraI TTTAAA 1 cut(s) 198
EaeI YGGCCR 1 cut(s) 504
Eco130I CCWWGG 1 cut(s) 507
Eco147I AGGCCT 1 cut(s) 138
Eco88I CYCGRG 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 507
FaeI CATG 5 cut(s) 87, 235, 249, 308, 511
FatI CATG 5 cut(s) 83, 231, 245, 304, 507
FauI CCCGC 1 cut(s) 242
Fnu4HI GCNGC 1 cut(s) 408
FokI GGATG 2 cut(s) 329, 530
Fsp4HI GCNGC 1 cut(s) 408
FspBI CTAG 1 cut(s) 159
GluI GCNGC 1 cut(s) 408
GsuI CTGGAG 1 cut(s) 225
HaeIII GGCC 2 cut(s) 138, 506
HapII CCGG 1 cut(s) 418
Hin1II CATG 5 cut(s) 87, 235, 249, 308, 511
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 3 cut(s) 287, 339, 462
HpaI GTTAAC 1 cut(s) 15
HpaII CCGG 1 cut(s) 418
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 3 cut(s) 373, 496, 517
Hpy188III TCNNGA 5 cut(s) 223, 322, 418, 437, 526
Hpy8I GTNNAC 1 cut(s) 15
HpyCH4III ACNGT 2 cut(s) 284, 457
HpyCH4IV ACGT 4 cut(s) 7, 166, 400, 467
HpyCH4V TGCA 3 cut(s) 4, 56, 521
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 518
HpySE526I ACGT 4 cut(s) 7, 166, 400, 467
Hsp92II CATG 5 cut(s) 87, 235, 249, 308, 511
Kpn2I TCCGGA 1 cut(s) 417
KspAI GTTAAC 1 cut(s) 15
Kzo9I GATC 3 cut(s) 111, 225, 414
LpnPI CCDG 7 cut(s) 120, 189, 196, 216, 417, 431, 475
Lsp1109I GCAGC 1 cut(s) 394
LweI GCATC 2 cut(s) 508, 521
MaeI CTAG 1 cut(s) 159
MaeII ACGT 4 cut(s) 7, 166, 400, 467
MaeIII GTNAC 3 cut(s) 278, 284, 523
MalI GATC 3 cut(s) 113, 227, 416
MboI GATC 3 cut(s) 111, 225, 414
MboII GAAGA 4 cut(s) 136, 337, 541, 560
MfeI CAATTG 1 cut(s) 428
MflI RGATCY 1 cut(s) 414
MlsI TGGCCA 1 cut(s) 506
MluCI AATT 1 cut(s) 428
MluNI TGGCCA 1 cut(s) 506
MlyI GAGTC 3 cut(s) 281, 348, 456
MmeI TCCRAC 1 cut(s) 86
MnlI CCTC 3 cut(s) 285, 414, 433
Mox20I TGGCCA 1 cut(s) 506
MroI TCCGGA 1 cut(s) 417
MscI TGGCCA 1 cut(s) 506
MseI TTAA 3 cut(s) 14, 197, 565
Msp20I TGGCCA 1 cut(s) 506
MspA1I CMGCKG 1 cut(s) 407
MspI CCGG 1 cut(s) 418
MspR9I CCNGG 1 cut(s) 204
MunI CAATTG 1 cut(s) 428
MvaI CCWGG 1 cut(s) 204
MwoI GCNNNNNNNGC 2 cut(s) 242, 518
NcoI CCATGG 1 cut(s) 507
NdeII GATC 3 cut(s) 111, 225, 414
NlaIII CATG 5 cut(s) 87, 235, 249, 308, 511
NmeAIII GCCGAG 1 cut(s) 436
NmuCI GTSAC 2 cut(s) 284, 523
NspI RCATGY 1 cut(s) 249
PaeI GCATGC 1 cut(s) 249
PaeR7I CTCGAG 1 cut(s) 437
PceI AGGCCT 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PkrI GCNGC 1 cut(s) 409
PleI GAGTC 3 cut(s) 281, 347, 456
PpsI GAGTC 3 cut(s) 281, 347, 456
Psp1406I AACGTT 2 cut(s) 7, 166
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PsuI RGATCY 1 cut(s) 414
PvuII CAGCTG 1 cut(s) 407
SaqAI TTAA 3 cut(s) 14, 197, 565
SatI GCNGC 1 cut(s) 408
Sau3AI GATC 3 cut(s) 111, 225, 414
SchI GAGTC 3 cut(s) 281, 348, 456
ScrFI CCNGG 1 cut(s) 204
SetI ASST 8 cut(s) 10, 22, 73, 169, 403, 409, 425, 470
SfaNI GCATC 2 cut(s) 508, 521
Sfr274I CTCGAG 1 cut(s) 437
SlaI CTCGAG 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
SphI GCATGC 1 cut(s) 249
Sse9I AATT 1 cut(s) 428
SseBI AGGCCT 1 cut(s) 138
SsiI CCGC 2 cut(s) 249, 263
SspMI CTAG 1 cut(s) 159
StuI AGGCCT 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 202
StyI CCWWGG 1 cut(s) 507
TaaI ACNGT 2 cut(s) 284, 457
TaiI ACGT 4 cut(s) 10, 169, 403, 470
TaqI TCGA 4 cut(s) 114, 222, 228, 438
TasI AATT 1 cut(s) 428
Tru1I TTAA 3 cut(s) 14, 197, 565
Tru9I TTAA 3 cut(s) 14, 197, 565
TseFI GTSAC 2 cut(s) 284, 523
TseI GCWGC 1 cut(s) 407
Tsp45I GTSAC 2 cut(s) 284, 523
TspDTI ATGAA 2 cut(s) 85, 321
XceI RCATGY 1 cut(s) 249
XhoI CTCGAG 1 cut(s) 437
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.