Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0010797

Physical Location & Seq

Genomic Coordinates Reverse (-)

58642174 .. 58643689

Gene Structure 1516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0428700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGATGCAGCAGAGCTGGAGCTGGAGAGGCGGAGCAAGTTCTTGAGTAGTTTGATTCAGAAGAAGAAGGCGGTGGAGCAGCAAGACCACCATGACATGCTCAATGTGAGAGTTAGGGCGTCTGATATGCCAGTCGCTTTGCAAAACCGAGCTTTTCGGTGCGCGAGGGATCATCTTGACTCCATGCCTGGGAAGCTCGACAGTAAACGGCTTGCTTTGGCACTTAAGAAGGTCATATCTTTTGGGTTTATCAGATCAGGGTTTTGCTTTGTTTATCTGGGTTTTGATCTTGTGGGTTTTGTAGTGTCCGGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009908 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

105

Amino Acids

11.87

Weight (kDa)

9.56

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61110
fragaria_vesca	FvH4_3g04630
malus_domestica	MD05G1321800.v1.1 MD05G1321900.v1.1 MD10G1299900.v1.1
prunus_persica	Prupe.4G040900_v2.0.a1 Prupe.4G040900_v2.0.a1
pyrus_communis	pycom05g29620 pycom10g25260
rosa_chinensis	RchiOBHm_Chr5g0007561
rosa_laevigata	RLG00000031468
rosa_multiflora	Rmu_ssc0000182.1_g000018
rosa_roxburghii	Rroxscaffold_1G00068840
rosa_rugosa	Rorug04G0428600 Rorug04G0428700
rosa_samantha	Rh5AG056300 Rh5BG053800 Rh5CG063600 Rh5DG052800
rosa_wichuraiana	Rw5G005390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	164
AccIII	TCCGGA	1 cut(s)	308
AciI	CCGC	2 cut(s)	31, 71
AclWI	GGATC	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	189
AflII	CTTAAG	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	4 cut(s)	16, 22, 152, 196
AluI	AGCT	4 cut(s)	16, 22, 152, 196
AlwI	GGATC	1 cut(s)	177
Aor13HI	TCCGGA	1 cut(s)	308
ApeKI	GCWGC	2 cut(s)	8, 79
AspLEI	GCGC	1 cut(s)	164
BbvI	GCAGC	2 cut(s)	20, 91
BceAI	ACGGC	1 cut(s)	224
BciT130I	CCWGG	1 cut(s)	189
BfrI	CTTAAG	1 cut(s)	224
BisI	GCNGC	2 cut(s)	9, 80
BlsI	GCNGC	2 cut(s)	10, 81
Bme1390I	CCNGG	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	189
BpmI	CTGGAG	2 cut(s)	38, 44
BpuEI	CTTGAG	1 cut(s)	64
BsaHI	GRCGYC	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	188
BsaWI	WCCGGW	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse1I	ACTGG	1 cut(s)	131
BseAI	TCCGGA	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	188
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	131
BseXI	GCAGC	2 cut(s)	20, 91
Bsh1236I	CGCG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	309
BslI	CCNNNNNNNGG	1 cut(s)	189
Bsp13I	TCCGGA	1 cut(s)	308
Bsp143I	GATC	3 cut(s)	169, 254, 286
BspACI	CCGC	2 cut(s)	31, 71
BspEI	TCCGGA	1 cut(s)	308
BspFNI	CGCG	1 cut(s)	164
BspPI	GGATC	1 cut(s)	177
BspTI	CTTAAG	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	3 cut(s)	169, 254, 286
BssNI	GRCGYC	1 cut(s)	119
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	203
BstACI	GRCGYC	1 cut(s)	119
BstAFI	CTTAAG	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	3 cut(s)	172, 257, 289
BstMBI	GATC	3 cut(s)	169, 254, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 193
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	187
BstUI	CGCG	1 cut(s)	164
BstV1I	GCAGC	2 cut(s)	20, 91
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	213
CfoI	GCGC	1 cut(s)	164
CseI	GACGC	1 cut(s)	108
CviAII	CATG	3 cut(s)	92, 97, 184
CviJI	RGCY	5 cut(s)	16, 22, 152, 196, 211
CviKI_1	RGCY	5 cut(s)	16, 22, 152, 196, 211
DpnI	GATC	3 cut(s)	171, 256, 288
DpnII	GATC	3 cut(s)	169, 254, 286
EciI	GGCGGA	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	187
FaeI	CATG	3 cut(s)	95, 100, 187
FaiI	YATR	5 cut(s)	93, 98, 128, 185, 236
FatI	CATG	3 cut(s)	91, 96, 183
Fnu4HI	GCNGC	2 cut(s)	9, 80
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	9, 80
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	2 cut(s)	9, 80
GsuI	CTGGAG	2 cut(s)	38, 44
HapII	CCGG	1 cut(s)	309
HgaI	GACGC	1 cut(s)	108
HhaI	GCGC	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	3 cut(s)	95, 100, 187
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HinfI	GANTC	2 cut(s)	55, 179
HpaII	CCGG	1 cut(s)	309
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	3 cut(s)	60, 124, 254
Hpy188III	TCNNGA	3 cut(s)	43, 176, 309
Hpy8I	GTNNAC	1 cut(s)	206
HpyAV	CCTTC	2 cut(s)	61, 223
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4V	TGCA	2 cut(s)	8, 142
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 193
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	3 cut(s)	95, 100, 187
HspAI	GCGC	1 cut(s)	162
Kpn2I	TCCGGA	1 cut(s)	308
Kzo9I	GATC	3 cut(s)	169, 254, 286
LmnI	GCTCC	3 cut(s)	19, 33, 76
LpnPI	CCDG	7 cut(s)	2, 8, 144, 174, 201, 243, 263
Lsp1109I	GCAGC	2 cut(s)	20, 91
MalI	GATC	3 cut(s)	171, 256, 288
MboI	GATC	3 cut(s)	169, 254, 286
MboII	GAAGA	2 cut(s)	73, 76
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	2 cut(s)	21, 159
MroI	TCCGGA	1 cut(s)	308
MseI	TTAA	1 cut(s)	225
MspCI	CTTAAG	1 cut(s)	224
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	189
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	2 cut(s)	28, 193
NdeII	GATC	3 cut(s)	169, 254, 286
NlaIII	CATG	3 cut(s)	95, 100, 187
NspI	RCATGY	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	55
PkrI	GCNGC	2 cut(s)	10, 81
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	2 cut(s)	9, 80
Sau3AI	GATC	3 cut(s)	169, 254, 286
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	189
SetI	ASST	5 cut(s)	18, 24, 154, 198, 234
SmlI	CTYRAG	2 cut(s)	43, 224
SmoI	CTYRAG	2 cut(s)	43, 224
SsiI	CCGC	2 cut(s)	31, 71
StyD4I	CCNGG	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	203
TaqI	TCGA	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TseI	GCWGC	2 cut(s)	8, 79
Vha464I	CTTAAG	1 cut(s)	224
XceI	RCATGY	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.