Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010797

Physical Location & Seq

Genomic Coordinates Forward (+)

89908930 .. 89910419

Gene Structure 1490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00068840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAGAGCACGGACTCGTCCTCCGGTTCTGGTCACCCGCAGCTCCCTCCCGGGTTCCGGTTCCACCCGACCGACGAGGAGCTGGTTGTCCACTACCTCAAGAAGAAAGCCGCCTCCGCTCCGCTTCCGGTCACCATCATCGCCGAGGTCGACTTGTACAAGTTCGATCCATGGGAGCTACCGAGCCTCGTTTGGGGAGCAGGAGTGGTATTTTTCAGTCCCAGAGACCGGAAGTACCCGAACGGAGCTAGGCCGAACCGAGCGGCGACCTCGGGGTACTGGAAAGCCACCGGAACCGACAAGCCGATTCTGACCTCGAACGGAAACCAAAAGGTCGGCGTCAAGAAAGCTCTGGTTTTCTACGGTGGCAAACCGCCGAAAGGAATCAAAACCAATTGGATTATGCACGAGTATCGCCTCGTCAACGACGACAATTCCGGCGCCGGCCTCAAGCCTCCTGATCCGACCAACAAAAAAGCCTCCCTAAGGCTGGATGACTGGGTTTTGTGTCGGATTTACAAGAAGAACAATGCGCAGAGGCCTATGATGGAGTGCGATCATCACAAGGAGGAGGACTGTACGACTACCAACTCGATGGAGGGTATTTTCGTCCAGTCAATGCCGAAGCCATCGCCGCCGAAGCCTACTAACTACACGGCGTTGCTGGAAAACGACGAGGACAATTTCTTCGAGGGGATATTATCGAGTGAAGGCGTGCAAAACAGTAGTCATTCCAACCTTTCCCATCAGTTCATGTCAAGCTCGAAAAGCGACGTCGTAATGCCTGCGAACAACCACATCTCCAAGCGTCAGCTTACGTCGCCGTTTTGGAACGAAGCGGGGGGATCATCATCGATGGGGACTAATTCATCGTCGAGCAAGAGGTTTCATACTGATCTCAATAGCGGTGGTGGCAGTGGAGGTGGAGGTGGGGTTGATGAAAGCAACACCTCTTTTGTTTCTATGCTCAACCATCTACCTCAAAACGCGGCGTTTCACCACAACTCGCTTCTTGGGTCGCTTGGGGATGGGGTTTTCCGCCCACAGTTTCATCTTCCCAGTATGAATTGGAACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009908 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

359

Amino Acids

39.32

Weight (kDa)

7.79

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	16 - 140	1.2e-44	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61110
fragaria_vesca	FvH4_3g04630
malus_domestica	MD05G1321800.v1.1 MD05G1321900.v1.1 MD10G1299900.v1.1
prunus_persica	Prupe.4G040900_v2.0.a1 Prupe.4G040900_v2.0.a1
pyrus_communis	pycom05g29620 pycom10g25260
rosa_chinensis	RchiOBHm_Chr5g0007561
rosa_laevigata	RLG00000031468
rosa_multiflora	Rmu_ssc0000182.1_g000018
rosa_roxburghii	Rroxscaffold_1G00068840
rosa_rugosa	Rorug04G0428600 Rorug04G0428700
rosa_samantha	Rh5AG056300 Rh5BG053800 Rh5CG063600 Rh5DG052800
rosa_wichuraiana	Rw5G005390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	777
Acc16I	TGCGCA	1 cut(s)	534
AccB1I	GGYRCC	1 cut(s)	440
AccBSI	CCGCTC	2 cut(s)	119, 263
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	1 cut(s)	989
AclWI	GGATC	3 cut(s)	161, 455, 853
AcyI	GRCGYC	3 cut(s)	339, 441, 774
AfaI	GTAC	4 cut(s)	158, 236, 278, 580
AfiI	CCNNNNNNNGG	6 cut(s)	57, 193, 228, 380, 486, 490
AluBI	AGCT	7 cut(s)	43, 82, 178, 248, 350, 762, 814
AluI	AGCT	7 cut(s)	43, 82, 178, 248, 350, 762, 814
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	219
AlwI	GGATC	3 cut(s)	161, 455, 853
Ama87I	CYCGRG	2 cut(s)	50, 271
AoxI	GGCC	3 cut(s)	251, 445, 539
ApeKI	GCWGC	1 cut(s)	40
ArsI	GACNNNNNNTTYG	4 cut(s)	671, 703, 712, 744
AspLEI	GCGC	2 cut(s)	443, 535
AsuC2I	CCSGG	2 cut(s)	51, 52
AsuHPI	GGTGA	3 cut(s)	26, 124, 989
AvaI	CYCGRG	2 cut(s)	50, 271
AxyI	CCTNAGG	1 cut(s)	485
BanI	GGYRCC	1 cut(s)	440
BauI	CACGAG	1 cut(s)	407
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	8 cut(s)	143, 541, 589, 637, 753, 850, 981, 1022
BceAI	ACGGC	2 cut(s)	672, 808
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BcnI	CCSGG	2 cut(s)	51, 52
BcoDI	GTCTC	1 cut(s)	219
BfaI	CTAG	1 cut(s)	249
BfoI	RGCGCY	1 cut(s)	444
BisI	GCNGC	5 cut(s)	41, 111, 264, 635, 990
BlsI	GCNGC	5 cut(s)	42, 112, 265, 636, 991
Bme1390I	CCNGG	2 cut(s)	51, 52
BmeT110I	CYCGRG	2 cut(s)	50, 271
BmiI	GGNNCC	4 cut(s)	56, 62, 295, 442
BmrFI	CCNGG	2 cut(s)	51, 52
BmrI	ACTGGG	2 cut(s)	508, 1053
BmuI	ACTGGG	2 cut(s)	508, 1053
BpuEI	CTTGAG	2 cut(s)	83, 434
BpuMI	CCSGG	2 cut(s)	51, 52
Bsa29I	ATCGAT	1 cut(s)	854
BsaBI	GATNNNNATC	1 cut(s)	850
BsaHI	GRCGYC	3 cut(s)	339, 441, 774
BsaI	GGTCTC	1 cut(s)	219
BsaJI	CCNNGG	4 cut(s)	50, 144, 170, 270
BsaWI	WCCGGW	5 cut(s)	23, 57, 127, 228, 290
BsaXI	ACNNNNNCTCC	8 cut(s)	5, 35, 189, 219, 785, 815, 918, 948
Bsc4I	CCNNNNNNNGG	6 cut(s)	57, 193, 228, 380, 486, 490
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	4 cut(s)	284, 503, 613, 1059
Bse21I	CCTNAGG	1 cut(s)	485
Bse8I	GATNNNNATC	1 cut(s)	850
BseCI	ATCGAT	1 cut(s)	854
BseDI	CCNNGG	4 cut(s)	50, 144, 170, 270
BseGI	GGATG	2 cut(s)	499, 1033
BseJI	GATNNNNATC	1 cut(s)	850
BseLI	CCNNNNNNNGG	6 cut(s)	57, 193, 228, 380, 486, 490
BseNI	ACTGG	4 cut(s)	284, 503, 613, 1059
BseRI	GAGGAG	2 cut(s)	92, 584
BseXI	GCAGC	1 cut(s)	52
Bsh1236I	CGCG	1 cut(s)	989
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	3 cut(s)	253, 447, 541
BshNI	GGYRCC	1 cut(s)	440
BshVI	ATCGAT	1 cut(s)	854
BsiEI	CGRYCG	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	11
BsiHKCI	CYCGRG	2 cut(s)	50, 271
BsiSI	CCGG	8 cut(s)	24, 51, 58, 128, 229, 291, 438, 444
BslFI	GGGAC	2 cut(s)	204, 874
BslI	CCNNNNNNNGG	6 cut(s)	57, 193, 228, 380, 486, 490
BsmAI	GTCTC	1 cut(s)	219
BsmFI	GGGAC	2 cut(s)	204, 874
BsnI	GGCC	3 cut(s)	253, 447, 541
Bso31I	GGTCTC	1 cut(s)	219
BsoBI	CYCGRG	2 cut(s)	50, 271
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp1407I	TGTACA	1 cut(s)	156
Bsp143I	GATC	5 cut(s)	166, 460, 556, 845, 895
Bsp19I	CCATGG	1 cut(s)	170
BspANI	GGCC	3 cut(s)	253, 447, 541
BspDI	ATCGAT	1 cut(s)	854
BspFNI	CGCG	1 cut(s)	989
BspLI	GGNNCC	4 cut(s)	56, 62, 295, 442
BspPI	GGATC	3 cut(s)	161, 455, 853
BspT107I	GGYRCC	1 cut(s)	440
BspTNI	GGTCTC	1 cut(s)	219
BsrBI	CCGCTC	2 cut(s)	119, 263
BsrFI	RCCGGY	1 cut(s)	443
BsrGI	TGTACA	1 cut(s)	156
BsrI	ACTGG	4 cut(s)	284, 503, 613, 1059
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	4 cut(s)	50, 144, 170, 270
BssMI	GATC	5 cut(s)	166, 460, 556, 845, 895
BssNI	GRCGYC	3 cut(s)	339, 441, 774
BssSI	CACGAG	1 cut(s)	407
BssT1I	CCWWGG	1 cut(s)	170
Bst2BI	CACGAG	1 cut(s)	407
Bst4CI	ACNGT	4 cut(s)	365, 578, 725, 1047
BstACI	GRCGYC	3 cut(s)	339, 441, 774
BstAUI	TGTACA	1 cut(s)	156
BstC8I	GCNNGC	3 cut(s)	445, 716, 786
BstDEI	CTNAG	1 cut(s)	485
BstDSI	CCRYGG	1 cut(s)	170
BstEII	GGTNACC	2 cut(s)	32, 130
BstENI	CCTNNNNNAGG	1 cut(s)	484
BstF5I	GGATG	2 cut(s)	499, 1033
BstFNI	CGCG	1 cut(s)	989
BstH2I	RGCGCY	1 cut(s)	444
BstHHI	GCGC	2 cut(s)	443, 535
BstKTI	GATC	5 cut(s)	169, 463, 559, 848, 898
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	5 cut(s)	166, 460, 556, 845, 895
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	6 cut(s)	116, 634, 640, 768, 820, 912
BstPI	GGTNACC	2 cut(s)	32, 130
BstSCI	CCNGG	2 cut(s)	49, 50
BstUI	CGCG	1 cut(s)	989
BstV1I	GCAGC	1 cut(s)	52
BstXI	CCANNNNNNTGG	1 cut(s)	595
Bsu15I	ATCGAT	1 cut(s)	854
Bsu36I	CCTNAGG	1 cut(s)	485
BsuRI	GGCC	3 cut(s)	253, 447, 541
BsuTUI	ATCGAT	1 cut(s)	854
BtgI	CCRYGG	1 cut(s)	170
BtgZI	GCGATG	2 cut(s)	124, 615
BtsCI	GGATG	2 cut(s)	499, 1033
BtsI	GCAGTG	1 cut(s)	922
BtsIMutI	CAGTG	1 cut(s)	922
Cac8I	GCNNGC	3 cut(s)	445, 716, 786
CfoI	GCGC	2 cut(s)	443, 535
Cfr10I	RCCGGY	1 cut(s)	443
Cfr9I	CCCGGG	1 cut(s)	50
ClaI	ATCGAT	1 cut(s)	854
CseI	GACGC	2 cut(s)	328, 797
Csp6I	GTAC	4 cut(s)	157, 235, 277, 579
CspCI	CAANNNNNGTGG	2 cut(s)	889, 924
CviAII	CATG	2 cut(s)	171, 754
CviQI	GTAC	4 cut(s)	157, 235, 277, 579
DdeI	CTNAG	1 cut(s)	485
DinI	GGCGCC	1 cut(s)	442
DpnI	GATC	5 cut(s)	168, 462, 558, 847, 897
DpnII	GATC	5 cut(s)	166, 460, 556, 845, 895
EciI	GGCGGA	1 cut(s)	1028
Eco130I	CCWWGG	1 cut(s)	170
Eco147I	AGGCCT	1 cut(s)	541
Eco31I	GGTCTC	1 cut(s)	219
Eco81I	CCTNAGG	1 cut(s)	485
Eco88I	CYCGRG	2 cut(s)	50, 271
Eco91I	GGTNACC	2 cut(s)	32, 130
EcoNI	CCTNNNNNAGG	1 cut(s)	484
EcoO65I	GGTNACC	2 cut(s)	32, 130
EcoT14I	CCWWGG	1 cut(s)	170
EgeI	GGCGCC	1 cut(s)	442
EheI	GGCGCC	1 cut(s)	442
ErhI	CCWWGG	1 cut(s)	170
FaeI	CATG	2 cut(s)	174, 757
FaiI	YATR	8 cut(s)	172, 404, 545, 755, 891, 965, 1064, 1078
FaqI	GGGAC	2 cut(s)	204, 874
FatI	CATG	2 cut(s)	170, 753
FauI	CCCGC	2 cut(s)	45, 832
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	5 cut(s)	41, 111, 264, 635, 990
FokI	GGATG	2 cut(s)	506, 1040
Fsp4HI	GCNGC	5 cut(s)	41, 111, 264, 635, 990
FspBI	CTAG	1 cut(s)	249
FspI	TGCGCA	1 cut(s)	534
GlaI	GCGC	2 cut(s)	442, 534
GluI	GCNGC	5 cut(s)	41, 111, 264, 635, 990
HaeII	RGCGCY	1 cut(s)	444
HaeIII	GGCC	3 cut(s)	253, 447, 541
HapII	CCGG	8 cut(s)	24, 51, 58, 128, 229, 291, 438, 444
HgaI	GACGC	2 cut(s)	328, 797
HhaI	GCGC	2 cut(s)	443, 535
Hin1I	GRCGYC	3 cut(s)	339, 441, 774
Hin1II	CATG	2 cut(s)	174, 757
Hin6I	GCGC	2 cut(s)	441, 533
HinP1I	GCGC	2 cut(s)	441, 533
HincII	GTYRAC	2 cut(s)	151, 424
HindII	GTYRAC	2 cut(s)	151, 424
HinfI	GANTC	3 cut(s)	14, 307, 384
HpaII	CCGG	8 cut(s)	24, 51, 58, 128, 229, 291, 438, 444
HphI	GGTGA	3 cut(s)	26, 124, 989
Hpy166II	GTNNAC	3 cut(s)	91, 151, 424
Hpy188I	TCNGA	3 cut(s)	312, 465, 513
Hpy188III	TCNNGA	3 cut(s)	100, 343, 458
Hpy8I	GTNNAC	3 cut(s)	91, 151, 424
Hpy99I	CGWCG	7 cut(s)	77, 431, 677, 776, 779, 823, 877
HpyAV	CCTTC	1 cut(s)	704
HpyCH4III	ACNGT	4 cut(s)	365, 578, 725, 1047
HpyCH4IV	ACGT	2 cut(s)	774, 818
HpyCH4V	TGCA	2 cut(s)	406, 718
HpyF10VI	GCNNNNNNNGC	6 cut(s)	116, 634, 640, 768, 820, 912
HpyF3I	CTNAG	1 cut(s)	485
HpySE526I	ACGT	2 cut(s)	774, 818
Hsp92I	GRCGYC	3 cut(s)	339, 441, 774
Hsp92II	CATG	2 cut(s)	174, 757
HspAI	GCGC	2 cut(s)	441, 533
KasI	GGCGCC	1 cut(s)	440
KroI	GCCGGC	1 cut(s)	443
KroNI	GCCGGC	1 cut(s)	445
Kzo9I	GATC	5 cut(s)	166, 460, 556, 845, 895
LmnI	GCTCC	6 cut(s)	48, 79, 124, 175, 197, 245
Lsp1109I	GCAGC	1 cut(s)	52
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	2 cut(s)	774, 818
MaeIII	GTNAC	2 cut(s)	32, 130
MalI	GATC	5 cut(s)	168, 462, 558, 847, 897
MbiI	CCGCTC	2 cut(s)	119, 263
MboI	GATC	5 cut(s)	166, 460, 556, 845, 895
MboII	GAAGA	4 cut(s)	115, 535, 679, 1046
MfeI	CAATTG	1 cut(s)	394
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	5 cut(s)	394, 433, 682, 865, 1066
Mly113I	GGCGCC	1 cut(s)	441
MlyI	GAGTC	1 cut(s)	8
MmeI	TCCRAC	3 cut(s)	488, 491, 759
MroNI	GCCGGC	1 cut(s)	443
MspI	CCGG	8 cut(s)	24, 51, 58, 128, 229, 291, 438, 444
MspR9I	CCNGG	2 cut(s)	51, 52
MunI	CAATTG	1 cut(s)	394
MvnI	CGCG	1 cut(s)	989
MwoI	GCNNNNNNNGC	6 cut(s)	116, 634, 640, 768, 820, 912
NaeI	GCCGGC	1 cut(s)	445
NarI	GGCGCC	1 cut(s)	441
NciI	CCSGG	2 cut(s)	51, 52
NcoI	CCATGG	1 cut(s)	170
NdeII	GATC	5 cut(s)	166, 460, 556, 845, 895
NgoMIV	GCCGGC	1 cut(s)	443
NlaIII	CATG	2 cut(s)	174, 757
NlaIV	GGNNCC	4 cut(s)	56, 62, 295, 442
NmeAIII	GCCGAG	1 cut(s)	169
NmuCI	GTSAC	2 cut(s)	32, 130
NsbI	TGCGCA	1 cut(s)	534
PceI	AGGCCT	1 cut(s)	541
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 426
PdiI	GCCGGC	1 cut(s)	445
PfeI	GAWTC	2 cut(s)	307, 384
PkrI	GCNGC	5 cut(s)	42, 112, 265, 636, 991
PleI	GAGTC	1 cut(s)	8
PluTI	GGCGCC	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	8
PspEI	GGTNACC	2 cut(s)	32, 130
PspN4I	GGNNCC	4 cut(s)	56, 62, 295, 442
RsaI	GTAC	4 cut(s)	158, 236, 278, 580
RsaNI	GTAC	4 cut(s)	157, 235, 277, 579
SalI	GTCGAC	1 cut(s)	149
SatI	GCNGC	5 cut(s)	41, 111, 264, 635, 990
Sau3AI	GATC	5 cut(s)	166, 460, 556, 845, 895
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	2 cut(s)	51, 52
SduI	GDGCHC	1 cut(s)	11
SfoI	GGCGCC	1 cut(s)	442
SmaI	CCCGGG	1 cut(s)	52
SmlI	CTYRAG	2 cut(s)	98, 449
SmoI	CTYRAG	2 cut(s)	98, 449
Sse9I	AATT	5 cut(s)	394, 433, 682, 865, 1066
SseBI	AGGCCT	1 cut(s)	541
SspDI	GGCGCC	1 cut(s)	440
SspMI	CTAG	1 cut(s)	249
StuI	AGGCCT	1 cut(s)	541
StyD4I	CCNGG	2 cut(s)	49, 50
StyI	CCWWGG	1 cut(s)	170
TaaI	ACNGT	4 cut(s)	365, 578, 725, 1047
TaiI	ACGT	2 cut(s)	777, 821
TaqI	TCGA	9 cut(s)	150, 165, 317, 593, 690, 704, 764, 854, 875
TaqII	GACCGA	1 cut(s)	86
TasI	AATT	5 cut(s)	394, 433, 682, 865, 1066
TatI	WGTACW	1 cut(s)	156
TauI	GCSGC	4 cut(s)	113, 266, 637, 992
TfiI	GAWTC	2 cut(s)	307, 384
TscAI	CASTG	1 cut(s)	922
TseFI	GTSAC	2 cut(s)	32, 130
TseI	GCWGC	1 cut(s)	40
Tsp45I	GTSAC	2 cut(s)	32, 130
TspDTI	ATGAA	6 cut(s)	742, 858, 878, 954, 1040, 1079
TspGWI	ACGGA	3 cut(s)	26, 258, 336
TspMI	CCCGGG	1 cut(s)	50
TspRI	CASTG	1 cut(s)	922
XagI	CCTNNNNNAGG	1 cut(s)	484
XmaI	CCCGGG	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	1 cut(s)	249
ZraI	GACGTC	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.