Rh5DG052800
NAC Family

NAC transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0010797
Physical Location & Seq
Reverse (-)
4503937 .. 4504739
803 bp
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UTR
Exon/CDS
Intron
Rh5DG052800.1

Sequence Viewer

Length: 678 bp
ATGCACGAGTATCGCCTCGTCAACGACGACAATTCCTGCGCCGGCCTCAAGCCTCCTGATCCGACCAACAAAAAAGCCTCCCTAAGGCTGGATGACTGGGTTTTGTGTCGGATTTACAAGAAGAACAATGCGCAGAGGCCTATGATGGAGTGTGATCATCACAAGGAGGAGGACTCTACGACTACCAACTCGATGGAGGGTATTTTCGTCCAGTCAATGCCGAAGCCATCGCCGCTGAAGCCTACTAACTACACGGCGTTGCTGGAAAACGACGAGGACAATTTCTTCGACGGGATATTATCGAGTGAAGGCGTGCAAAACAGTAGTCATTCCAACCTTTCCCATCAGTTCATGTCAAGCTCGAAAAGCGACGTCGTAATGCCTGCGAACAACCACACCTCCAAGCGTCAGCTTACGTCGCCGTTTTGGAACGAAGCGGGGGGATCATCATCGATGGGGACTAATTCATCGTCGAGCAAGAGGTTTCATACTGATCTCAATAGCGGTGGTGGCAGTGGAGGTGGAGGTGGGGTTGATGAAAGCAACACCTCTTTTGTTTCTATGCTCAACCAGCTACCTCAAAACGCGGCGTTTCACCACAACTCGCTTCTTGGGTCGCTTGGGGATGGGGTTTTGCGCCCACAGTTTCATCTTCCCAGTATGAATTGGAACTCATAA

Protein Analysis

225

Amino Acids

24.64

Weight (kDa)

5.89

Isoelectric Point (pI)

54.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010797)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61110
fragaria_vesca FvH4_3g04630
malus_domestica MD05G1321800.v1.1 MD05G1321900.v1.1 MD10G1299900.v1.1
prunus_persica Prupe.4G040900_v2.0.a1 Prupe.4G040900_v2.0.a1
pyrus_communis pycom05g29620 pycom10g25260
rosa_chinensis RchiOBHm_Chr5g0007561
rosa_laevigata RLG00000031468
rosa_multiflora Rmu_ssc0000182.1_g000018
rosa_roxburghii Rroxscaffold_1G00068840
rosa_rugosa Rorug04G0428600 Rorug04G0428700
rosa_samantha Rh5AG056300 Rh5BG053800 Rh5CG063600 Rh5DG052800
rosa_wichuraiana Rw5G005390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 375
Acc16I TGCGCA 1 cut(s) 132
AccII CGCG 1 cut(s) 587
AciI CCGC 4 cut(s) 233, 437, 504, 587
AclWI GGATC 2 cut(s) 53, 451
AcuI CTGAAG 1 cut(s) 257
AcyI GRCGYC 1 cut(s) 372
AfiI CCNNNNNNNGG 2 cut(s) 84, 88
AluBI AGCT 3 cut(s) 360, 412, 574
AluI AGCT 3 cut(s) 360, 412, 574
AlwI GGATC 2 cut(s) 53, 451
AoxI GGCC 2 cut(s) 43, 137
ArsI GACNNNNNNTTYG 4 cut(s) 269, 301, 310, 342
AspLEI GCGC 3 cut(s) 41, 133, 639
AsuHPI GGTGA 1 cut(s) 587
AxyI CCTNAGG 1 cut(s) 83
BauI CACGAG 1 cut(s) 5
BccI CCATC 6 cut(s) 139, 187, 235, 351, 448, 620
BceAI ACGGC 2 cut(s) 270, 406
BcgI CGANNNNNNTGC 1 cut(s) 27
BclI TGATCA 1 cut(s) 154
BisI GCNGC 2 cut(s) 233, 588
BlsI GCNGC 2 cut(s) 234, 589
BmrI ACTGGG 2 cut(s) 106, 651
BmuI ACTGGG 2 cut(s) 106, 651
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BpuEI CTTGAG 1 cut(s) 32
Bsa29I ATCGAT 1 cut(s) 452
BsaBI GATNNNNATC 1 cut(s) 448
BsaHI GRCGYC 1 cut(s) 372
BsaXI ACNNNNNCTCC 4 cut(s) 383, 413, 516, 546
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 88
Bse118I RCCGGY 1 cut(s) 41
Bse1I ACTGG 3 cut(s) 101, 211, 657
Bse21I CCTNAGG 1 cut(s) 83
Bse8I GATNNNNATC 1 cut(s) 448
BseCI ATCGAT 1 cut(s) 452
BseGI GGATG 2 cut(s) 97, 631
BseJI GATNNNNATC 1 cut(s) 448
BseLI CCNNNNNNNGG 2 cut(s) 84, 88
BseNI ACTGG 3 cut(s) 101, 211, 657
BseRI GAGGAG 1 cut(s) 182
Bsh1236I CGCG 1 cut(s) 587
BshFI GGCC 2 cut(s) 45, 139
BshVI ATCGAT 1 cut(s) 452
BsiSI CCGG 1 cut(s) 42
BslFI GGGAC 1 cut(s) 472
BslI CCNNNNNNNGG 2 cut(s) 84, 88
BsmFI GGGAC 1 cut(s) 472
BsnI GGCC 2 cut(s) 45, 139
Bsp143I GATC 4 cut(s) 58, 154, 443, 493
BspACI CCGC 4 cut(s) 233, 437, 504, 587
BspANI GGCC 2 cut(s) 45, 139
BspDI ATCGAT 1 cut(s) 452
BspFNI CGCG 1 cut(s) 587
BspPI GGATC 2 cut(s) 53, 451
BsrFI RCCGGY 1 cut(s) 41
BsrI ACTGG 3 cut(s) 101, 211, 657
BssAI RCCGGY 1 cut(s) 41
BssMI GATC 4 cut(s) 58, 154, 443, 493
BssNI GRCGYC 1 cut(s) 372
BssSI CACGAG 1 cut(s) 5
Bst2BI CACGAG 1 cut(s) 5
Bst4CI ACNGT 2 cut(s) 323, 645
BstACI GRCGYC 1 cut(s) 372
BstC8I GCNNGC 3 cut(s) 43, 314, 384
BstDEI CTNAG 1 cut(s) 83
BstENI CCTNNNNNAGG 1 cut(s) 82
BstF5I GGATG 2 cut(s) 97, 631
BstFNI CGCG 1 cut(s) 587
BstHHI GCGC 3 cut(s) 41, 133, 639
BstKTI GATC 4 cut(s) 61, 157, 446, 496
BstMBI GATC 4 cut(s) 58, 154, 443, 493
BstMWI GCNNNNNNNGC 6 cut(s) 232, 238, 366, 418, 510, 571
BstUI CGCG 1 cut(s) 587
BstXI CCANNNNNNTGG 1 cut(s) 193
Bsu15I ATCGAT 1 cut(s) 452
Bsu36I CCTNAGG 1 cut(s) 83
BsuRI GGCC 2 cut(s) 45, 139
BsuTUI ATCGAT 1 cut(s) 452
BtgZI GCGATG 1 cut(s) 213
BtsCI GGATG 2 cut(s) 97, 631
BtsI GCAGTG 1 cut(s) 520
BtsIMutI CAGTG 1 cut(s) 520
Cac8I GCNNGC 3 cut(s) 43, 314, 384
CfoI GCGC 3 cut(s) 41, 133, 639
Cfr10I RCCGGY 1 cut(s) 41
ClaI ATCGAT 1 cut(s) 452
CseI GACGC 1 cut(s) 395
CspCI CAANNNNNGTGG 2 cut(s) 487, 522
CviAII CATG 1 cut(s) 352
DdeI CTNAG 1 cut(s) 83
DpnI GATC 4 cut(s) 60, 156, 445, 495
DpnII GATC 4 cut(s) 58, 154, 443, 493
Eco147I AGGCCT 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 257
Eco81I CCTNAGG 1 cut(s) 83
EcoNI CCTNNNNNAGG 1 cut(s) 82
FaeI CATG 1 cut(s) 355
FaiI YATR 6 cut(s) 143, 353, 489, 563, 662, 676
FaqI GGGAC 1 cut(s) 472
FatI CATG 1 cut(s) 351
FauI CCCGC 1 cut(s) 430
FbaI TGATCA 1 cut(s) 154
Fnu4HI GCNGC 2 cut(s) 233, 588
FokI GGATG 2 cut(s) 104, 638
Fsp4HI GCNGC 2 cut(s) 233, 588
FspI TGCGCA 1 cut(s) 132
GlaI GCGC 3 cut(s) 40, 132, 638
GluI GCNGC 2 cut(s) 233, 588
HaeIII GGCC 2 cut(s) 45, 139
HapII CCGG 1 cut(s) 42
HgaI GACGC 1 cut(s) 395
HhaI GCGC 3 cut(s) 41, 133, 639
Hin1I GRCGYC 1 cut(s) 372
Hin1II CATG 1 cut(s) 355
Hin6I GCGC 3 cut(s) 39, 131, 637
HinP1I GCGC 3 cut(s) 39, 131, 637
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 1 cut(s) 173
HpaII CCGG 1 cut(s) 42
HphI GGTGA 1 cut(s) 587
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 2 cut(s) 63, 111
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 7 cut(s) 29, 275, 293, 374, 377, 421, 475
HpyAV CCTTC 1 cut(s) 302
HpyCH4III ACNGT 2 cut(s) 323, 645
HpyCH4IV ACGT 2 cut(s) 372, 416
HpyCH4V TGCA 2 cut(s) 4, 316
HpyF10VI GCNNNNNNNGC 6 cut(s) 232, 238, 366, 418, 510, 571
HpyF3I CTNAG 1 cut(s) 83
HpySE526I ACGT 2 cut(s) 372, 416
Hsp92I GRCGYC 1 cut(s) 372
Hsp92II CATG 1 cut(s) 355
HspAI GCGC 3 cut(s) 39, 131, 637
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 4 cut(s) 58, 154, 443, 493
MaeII ACGT 2 cut(s) 372, 416
MalI GATC 4 cut(s) 60, 156, 445, 495
MboI GATC 4 cut(s) 58, 154, 443, 493
MboII GAAGA 3 cut(s) 133, 277, 644
MluCI AATT 4 cut(s) 31, 280, 463, 664
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 3 cut(s) 86, 89, 357
MroNI GCCGGC 1 cut(s) 41
MspA1I CMGCKG 1 cut(s) 235
MspI CCGG 1 cut(s) 42
MvnI CGCG 1 cut(s) 587
MwoI GCNNNNNNNGC 6 cut(s) 232, 238, 366, 418, 510, 571
NaeI GCCGGC 1 cut(s) 43
NdeII GATC 4 cut(s) 58, 154, 443, 493
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 1 cut(s) 355
NsbI TGCGCA 1 cut(s) 132
PceI AGGCCT 1 cut(s) 139
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PdiI GCCGGC 1 cut(s) 43
PkrI GCNGC 2 cut(s) 234, 589
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
SatI GCNGC 2 cut(s) 233, 588
Sau3AI GATC 4 cut(s) 58, 154, 443, 493
SchI GAGTC 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 4 cut(s) 31, 280, 463, 664
SseBI AGGCCT 1 cut(s) 139
SsiI CCGC 4 cut(s) 233, 437, 504, 587
StuI AGGCCT 1 cut(s) 139
TaaI ACNGT 2 cut(s) 323, 645
TaiI ACGT 2 cut(s) 375, 419
TaqI TCGA 6 cut(s) 191, 288, 302, 362, 452, 473
TasI AATT 4 cut(s) 31, 280, 463, 664
TauI GCSGC 2 cut(s) 235, 590
TscAI CASTG 1 cut(s) 520
TspDTI ATGAA 6 cut(s) 340, 456, 476, 552, 638, 677
TspRI CASTG 1 cut(s) 520
XagI CCTNNNNNAGG 1 cut(s) 82
ZraI GACGTC 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.