FvH4_3g04630
NAC Family

NAC transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010797
Physical Location & Seq
Reverse (-)
2655643 .. 2657423
1781 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04630.t1

Sequence Viewer

Length: 1083 bp
ATGGAAAGCACGGACTCTTCCTCCGGCTCCGGCCACCCTCAGCTCCCTCCCGGCTTCCGGTTCCACCCGACGGACGAGGAGCTCGTCGTCCACTACCTGAAAAAGAAGGCCGCTTCCGTTCCGCTTCCCGTCACCATCATCGCGGAGATCGACTTGTACAAGTTCGATCCATGGGAGCTACCCAGTAAGGCGACGTTTGGGGAGCAGGAGTGGTATTTTTTCAGTCCCAGAGACCGGAAGTACCCCAACGGAGCTAGGCCGAACAGAGCGGCGACCTCAGGGTATTGGAAGGCCACCGGAACTGACAAGCCGATTCTGACCTCGAACGGTAGCCAAAAGGTCGGCGTCAAGAAAGCTCTGGTTTTCTACGGCGGGAAACCACCGAAAGGAATCAAAACCAATTGGATTATGCACGAGTATCGCCTCATAAACGACGAAAATTCCAGCGCCGCCCTCAAGCCTCCTGATCCGACCAACAAAAAAGCCTCCTTAAGGCTGGATGACTGGGTTTTGTGCCGGATTTACAAGAAGAACAACGCGCAGAGGCCTATGATGGAGTGTGATCATCATCTTCACAAGGAGGACTCTACTACCAACTCCATGGAGGGTATTTTCGTCCAGTCAATGACGAAGCCGTCGCCGCCGAAGGCCGCCACCAACTACACGGCGTTGCTGGAAAACGACGAGGAGGACAATTTCTTCGACGGGATATTATCGAGTGAAGGCGTGCAAAACAGTAGTCATTCCAACCTCTCCCATCAATTCATGTCGAGCTCCAAAAGCGACGTCGTAGTAATGCCCGTGAACAACAACAACTCGAAACATCAACTTCCGTCGCCGTTTTGGAACGAAGCGGGGGGATCATCATCGATGGGGACTAATAATTCATTGTCGAGCAAGAGGTTTCATACTGATCTCAACAGCGGTGGTGGCAGCGGAGGTGGGGTTGATGAAAACAACGCCTCCTTTGTTTCTATGCTCAATCAAAACGCGGCGTTTCACCATAACTCGCTTCTTGGTTCGCTTGGGGATGGGGTTTTGCGCCCACACTTTCATCTTCCCAGTATGAACTGGAACTCATAA

Protein Analysis

361

Amino Acids

39.77

Weight (kDa)

6.95

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 16 - 142 6.5e-51 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010797)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61110
fragaria_vesca FvH4_3g04630
malus_domestica MD05G1321800.v1.1 MD05G1321900.v1.1 MD10G1299900.v1.1
prunus_persica Prupe.4G040900_v2.0.a1 Prupe.4G040900_v2.0.a1
pyrus_communis pycom05g29620 pycom10g25260
rosa_chinensis RchiOBHm_Chr5g0007561
rosa_laevigata RLG00000031468
rosa_multiflora Rmu_ssc0000182.1_g000018
rosa_roxburghii Rroxscaffold_1G00068840
rosa_rugosa Rorug04G0428600 Rorug04G0428700
rosa_samantha Rh5AG056300 Rh5BG053800 Rh5CG063600 Rh5DG052800
rosa_wichuraiana Rw5G005390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 634
AatII GACGTC 1 cut(s) 789
AccBSI CCGCTC 1 cut(s) 269
AccII CGCG 3 cut(s) 143, 539, 992
AclWI GGATC 3 cut(s) 161, 461, 868
AcoI YGGCCR 1 cut(s) 31
AcsI RAATTY 1 cut(s) 439
AcyI GRCGYC 2 cut(s) 345, 786
AfaI GTAC 2 cut(s) 158, 242
AfiI CCNNNNNNNGG 5 cut(s) 57, 70, 234, 386, 492
AflII CTTAAG 1 cut(s) 490
AluBI AGCT 6 cut(s) 43, 82, 178, 254, 356, 774
AluI AGCT 6 cut(s) 43, 82, 178, 254, 356, 774
Alw21I GWGCWC 2 cut(s) 84, 776
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 3 cut(s) 161, 461, 868
AoxI GGCC 6 cut(s) 31, 108, 257, 291, 545, 648
ApeKI GCWGC 1 cut(s) 933
ApoI RAATTY 1 cut(s) 439
ArsI GACNNNNNNTTYG 6 cut(s) 683, 715, 724, 756, 771, 803
AspLEI GCGC 3 cut(s) 449, 541, 1044
AsuC2I CCSGG 1 cut(s) 51
AsuHPI GGTGA 2 cut(s) 124, 992
AxyI CCTNAGG 1 cut(s) 277
BanII GRGCYC 2 cut(s) 84, 776
BauI CACGAG 1 cut(s) 413
Bbv12I GWGCWC 2 cut(s) 84, 776
BbvCI CCTCAGC 1 cut(s) 39
BbvI GCAGC 1 cut(s) 945
BccI CCATC 5 cut(s) 143, 547, 765, 865, 1025
BceAI ACGGC 4 cut(s) 385, 619, 681, 823
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BclI TGATCA 1 cut(s) 562
BcnI CCSGG 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 1 cut(s) 255
BfoI RGCGCY 1 cut(s) 450
BfrI CTTAAG 1 cut(s) 490
BisI GCNGC 7 cut(s) 111, 270, 450, 641, 651, 934, 993
BlsI GCNGC 7 cut(s) 112, 271, 451, 642, 652, 935, 994
Bme1390I CCNGG 1 cut(s) 51
BmiI GGNNCC 2 cut(s) 28, 62
BmrFI CCNGG 1 cut(s) 51
BmrI ACTGGG 3 cut(s) 177, 514, 1056
BmuI ACTGGG 3 cut(s) 177, 514, 1056
Bpu10I CCTNAGC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 440
BpuMI CCSGG 1 cut(s) 51
Bsa29I ATCGAT 1 cut(s) 869
BsaBI GATNNNNATC 2 cut(s) 567, 865
BsaHI GRCGYC 2 cut(s) 345, 786
BsaI GGTCTC 1 cut(s) 225
BsaJI CCNNGG 2 cut(s) 170, 600
BsaWI WCCGGW 3 cut(s) 57, 234, 296
BsaXI ACNNNNNCTCC 8 cut(s) 5, 35, 194, 224, 930, 947, 960, 977
Bsc4I CCNNNNNNNGG 5 cut(s) 57, 70, 234, 386, 492
Bse1I ACTGG 5 cut(s) 183, 509, 619, 1062, 1076
Bse21I CCTNAGG 1 cut(s) 277
Bse8I GATNNNNATC 2 cut(s) 567, 865
BseCI ATCGAT 1 cut(s) 869
BseDI CCNNGG 2 cut(s) 170, 600
BseGI GGATG 2 cut(s) 505, 1036
BseJI GATNNNNATC 2 cut(s) 567, 865
BseLI CCNNNNNNNGG 5 cut(s) 57, 70, 234, 386, 492
BseMII CTCAG 2 cut(s) 53, 291
BseNI ACTGG 5 cut(s) 183, 509, 619, 1062, 1076
BseRI GAGGAG 2 cut(s) 92, 701
BseXI GCAGC 1 cut(s) 945
Bsh1236I CGCG 3 cut(s) 143, 539, 992
BshFI GGCC 6 cut(s) 33, 110, 259, 293, 547, 650
BshVI ATCGAT 1 cut(s) 869
BsiHKAI GWGCWC 2 cut(s) 84, 776
BsiSI CCGG 7 cut(s) 24, 30, 51, 58, 235, 297, 517
BslFI GGGAC 2 cut(s) 210, 889
BslI CCNNNNNNNGG 5 cut(s) 57, 70, 234, 386, 492
BsmAI GTCTC 1 cut(s) 225
BsmFI GGGAC 2 cut(s) 210, 889
BsnI GGCC 6 cut(s) 33, 110, 259, 293, 547, 650
Bso31I GGTCTC 1 cut(s) 225
Bsp1286I GDGCHC 2 cut(s) 84, 776
Bsp1407I TGTACA 1 cut(s) 156
Bsp143I GATC 6 cut(s) 147, 166, 466, 562, 860, 913
Bsp19I CCATGG 2 cut(s) 170, 600
BspANI GGCC 6 cut(s) 33, 110, 259, 293, 547, 650
BspCNI CTCAG 2 cut(s) 52, 290
BspDI ATCGAT 1 cut(s) 869
BspFNI CGCG 3 cut(s) 143, 539, 992
BspLI GGNNCC 2 cut(s) 28, 62
BspPI GGATC 3 cut(s) 161, 461, 868
BspTI CTTAAG 1 cut(s) 490
BspTNI GGTCTC 1 cut(s) 225
BsrBI CCGCTC 1 cut(s) 269
BsrGI TGTACA 1 cut(s) 156
BsrI ACTGG 5 cut(s) 183, 509, 619, 1062, 1076
BssECI CCNNGG 2 cut(s) 170, 600
BssMI GATC 6 cut(s) 147, 166, 466, 562, 860, 913
BssNI GRCGYC 2 cut(s) 345, 786
BssSI CACGAG 1 cut(s) 413
BssT1I CCWWGG 2 cut(s) 170, 600
Bst2BI CACGAG 1 cut(s) 413
Bst4CI ACNGT 2 cut(s) 329, 737
Bst6I CTCTTC 1 cut(s) 22
BstACI GRCGYC 2 cut(s) 345, 786
BstAFI CTTAAG 1 cut(s) 490
BstAUI TGTACA 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 728
BstDEI CTNAG 2 cut(s) 39, 277
BstDSI CCRYGG 2 cut(s) 170, 600
BstENI CCTNNNNNAGG 1 cut(s) 490
BstF5I GGATG 2 cut(s) 505, 1036
BstFNI CGCG 3 cut(s) 143, 539, 992
BstH2I RGCGCY 1 cut(s) 450
BstHHI GCGC 3 cut(s) 449, 541, 1044
BstKTI GATC 6 cut(s) 150, 169, 469, 565, 863, 916
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 6 cut(s) 147, 166, 466, 562, 860, 913
BstMWI GCNNNNNNNGC 3 cut(s) 640, 780, 930
BstSCI CCNGG 1 cut(s) 49
BstUI CGCG 3 cut(s) 143, 539, 992
BstV1I GCAGC 1 cut(s) 945
BstXI CCANNNNNNTGG 1 cut(s) 601
Bsu15I ATCGAT 1 cut(s) 869
Bsu36I CCTNAGG 1 cut(s) 277
BsuRI GGCC 6 cut(s) 33, 110, 259, 293, 547, 650
BsuTUI ATCGAT 1 cut(s) 869
BtgI CCRYGG 2 cut(s) 170, 600
BtgZI GCGATG 1 cut(s) 124
BtsCI GGATG 2 cut(s) 505, 1036
Cac8I GCNNGC 1 cut(s) 728
CfoI GCGC 3 cut(s) 449, 541, 1044
ClaI ATCGAT 1 cut(s) 869
CseI GACGC 1 cut(s) 334
Csp6I GTAC 2 cut(s) 157, 241
CspCI CAANNNNNGTGG 2 cut(s) 907, 942
CviAII CATG 3 cut(s) 171, 601, 766
CviQI GTAC 2 cut(s) 157, 241
DdeI CTNAG 2 cut(s) 39, 277
DpnI GATC 6 cut(s) 149, 168, 468, 564, 862, 915
DpnII GATC 6 cut(s) 147, 166, 466, 562, 860, 913
DrdI GACNNNNNNGTC 1 cut(s) 634
DseDI GACNNNNNNGTC 1 cut(s) 634
EaeI YGGCCR 1 cut(s) 31
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Ecl136II GAGCTC 2 cut(s) 82, 774
Eco130I CCWWGG 2 cut(s) 170, 600
Eco147I AGGCCT 1 cut(s) 547
Eco24I GRGCYC 2 cut(s) 84, 776
Eco31I GGTCTC 1 cut(s) 225
Eco53kI GAGCTC 2 cut(s) 82, 774
Eco81I CCTNAGG 1 cut(s) 277
EcoICRI GAGCTC 2 cut(s) 82, 774
EcoNI CCTNNNNNAGG 1 cut(s) 490
EcoT14I CCWWGG 2 cut(s) 170, 600
EcoT38I GRGCYC 2 cut(s) 84, 776
ErhI CCWWGG 2 cut(s) 170, 600
FaeI CATG 3 cut(s) 174, 604, 769
FaqI GGGAC 2 cut(s) 210, 889
FatI CATG 3 cut(s) 170, 600, 765
FauI CCCGC 2 cut(s) 365, 847
FbaI TGATCA 1 cut(s) 562
Fnu4HI GCNGC 7 cut(s) 111, 270, 450, 641, 651, 934, 993
FokI GGATG 2 cut(s) 512, 1043
FriOI GRGCYC 2 cut(s) 84, 776
Fsp4HI GCNGC 7 cut(s) 111, 270, 450, 641, 651, 934, 993
FspBI CTAG 1 cut(s) 255
GlaI GCGC 3 cut(s) 448, 540, 1043
GluI GCNGC 7 cut(s) 111, 270, 450, 641, 651, 934, 993
HaeII RGCGCY 1 cut(s) 450
HaeIII GGCC 6 cut(s) 33, 110, 259, 293, 547, 650
HapII CCGG 7 cut(s) 24, 30, 51, 58, 235, 297, 517
HgaI GACGC 1 cut(s) 334
HhaI GCGC 3 cut(s) 449, 541, 1044
Hin1I GRCGYC 2 cut(s) 345, 786
Hin1II CATG 3 cut(s) 174, 604, 769
Hin6I GCGC 3 cut(s) 447, 539, 1042
HinP1I GCGC 3 cut(s) 447, 539, 1042
HinfI GANTC 4 cut(s) 14, 313, 390, 584
HpaII CCGG 7 cut(s) 24, 30, 51, 58, 235, 297, 517
HphI GGTGA 2 cut(s) 124, 992
Hpy166II GTNNAC 2 cut(s) 91, 805
Hpy188I TCNGA 2 cut(s) 318, 471
Hpy188III TCNNGA 2 cut(s) 349, 464
Hpy8I GTNNAC 2 cut(s) 91, 805
HpyAV CCTTC 4 cut(s) 100, 283, 640, 716
HpyCH4III ACNGT 2 cut(s) 329, 737
HpyCH4IV ACGT 2 cut(s) 194, 786
HpyCH4V TGCA 2 cut(s) 412, 730
HpyF10VI GCNNNNNNNGC 3 cut(s) 640, 780, 930
HpyF3I CTNAG 2 cut(s) 39, 277
HpySE526I ACGT 2 cut(s) 194, 786
Hsp92I GRCGYC 2 cut(s) 345, 786
Hsp92II CATG 3 cut(s) 174, 604, 769
HspAI GCGC 3 cut(s) 447, 539, 1042
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 6 cut(s) 147, 166, 466, 562, 860, 913
LmnI GCTCC 7 cut(s) 32, 48, 79, 175, 202, 251, 779
Lsp1109I GCAGC 1 cut(s) 945
MaeI CTAG 1 cut(s) 255
MaeII ACGT 2 cut(s) 194, 786
MaeIII GTNAC 1 cut(s) 130
MalI GATC 6 cut(s) 149, 168, 468, 564, 862, 915
MbiI CCGCTC 1 cut(s) 269
MboI GATC 6 cut(s) 147, 166, 466, 562, 860, 913
MboII GAAGA 5 cut(s) 9, 541, 563, 691, 1049
MfeI CAATTG 1 cut(s) 400
MhlI GDGCHC 2 cut(s) 84, 776
MluCI AATT 5 cut(s) 400, 439, 694, 761, 883
MlyI GAGTC 2 cut(s) 8, 578
MmeI TCCRAC 2 cut(s) 494, 771
MseI TTAA 1 cut(s) 491
MspA1I CMGCKG 2 cut(s) 924, 936
MspCI CTTAAG 1 cut(s) 490
MspI CCGG 7 cut(s) 24, 30, 51, 58, 235, 297, 517
MspR9I CCNGG 1 cut(s) 51
MunI CAATTG 1 cut(s) 400
MvnI CGCG 3 cut(s) 143, 539, 992
MwoI GCNNNNNNNGC 3 cut(s) 640, 780, 930
NciI CCSGG 1 cut(s) 51
NcoI CCATGG 2 cut(s) 170, 600
NdeII GATC 6 cut(s) 147, 166, 466, 562, 860, 913
NlaIII CATG 3 cut(s) 174, 604, 769
NlaIV GGNNCC 2 cut(s) 28, 62
NmuCI GTSAC 1 cut(s) 130
PceI AGGCCT 1 cut(s) 547
PcsI WCGNNNNNNNCGW 2 cut(s) 81, 147
PfeI GAWTC 2 cut(s) 313, 390
PkrI GCNGC 7 cut(s) 112, 271, 451, 642, 652, 935, 994
PleI GAGTC 2 cut(s) 8, 578
PpsI GAGTC 2 cut(s) 8, 578
Psp124BI GAGCTC 2 cut(s) 84, 776
PspN4I GGNNCC 2 cut(s) 28, 62
RsaI GTAC 2 cut(s) 158, 242
RsaNI GTAC 2 cut(s) 157, 241
SacI GAGCTC 2 cut(s) 84, 776
SaqAI TTAA 1 cut(s) 491
SatI GCNGC 7 cut(s) 111, 270, 450, 641, 651, 934, 993
Sau3AI GATC 6 cut(s) 147, 166, 466, 562, 860, 913
SchI GAGTC 2 cut(s) 8, 578
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 2 cut(s) 84, 776
SmlI CTYRAG 2 cut(s) 455, 490
SmoI CTYRAG 2 cut(s) 455, 490
Sse9I AATT 5 cut(s) 400, 439, 694, 761, 883
SseBI AGGCCT 1 cut(s) 547
SspMI CTAG 1 cut(s) 255
SstI GAGCTC 2 cut(s) 84, 776
StuI AGGCCT 1 cut(s) 547
StyD4I CCNGG 1 cut(s) 49
StyI CCWWGG 2 cut(s) 170, 600
TaaI ACNGT 2 cut(s) 329, 737
TaiI ACGT 2 cut(s) 197, 789
TaqI TCGA 9 cut(s) 150, 165, 323, 702, 716, 770, 818, 869, 893
TasI AATT 5 cut(s) 400, 439, 694, 761, 883
TatI WGTACW 1 cut(s) 156
TauI GCSGC 6 cut(s) 113, 272, 452, 643, 653, 995
TfiI GAWTC 2 cut(s) 313, 390
Tru1I TTAA 1 cut(s) 491
Tru9I TTAA 1 cut(s) 491
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 1 cut(s) 933
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 6 cut(s) 754, 876, 896, 966, 1043, 1082
TspGWI ACGGA 5 cut(s) 26, 86, 106, 264, 822
Vha464I CTTAAG 1 cut(s) 490
XagI CCTNNNNNAGG 1 cut(s) 490
XapI RAATTY 1 cut(s) 439
XspI CTAG 1 cut(s) 255
ZraI GACGTC 1 cut(s) 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.