Rh5BG053800
NAC Family

NAC transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0010797
Physical Location & Seq
Reverse (-)
4318524 .. 4321406
2883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG053800.1

Sequence Viewer

Length: 1086 bp
ATGGAGAGCACGGACTCGTCCTCCGGTTCTGGTCACCCGCAGCTCCCTCCCGGGTTCCGGTTCCACCCGACCGACGAGGAGCTGGTTGTCCACTACCTCAAGAAGAAAGCCGCCTCCGCTCCGCTTCCGGTCACCATCATCGCCGAGGTCGACTTGTACAAGTTCGATCCATGGGAGCTACCGAGTAAGGCCACGTTTGGGGAGCAGGAGTGGTATTTTTTCAGTCCCAGAGAACGGAAGTACCCGAACGGAGCTAGGCCGAATCGAGCGGCGACCTCGGGGTATTGGAAAGCCACCGGAACCGACAAGCCGATTCTGACCTCGAACGGAAACCAAAAGGTCGGCGTCAAGAAAGCTCTGGTTTTCTACGGTGGCAAACCGCCGAAAGGAATCAAAACCAATTGGATTATGCACGAGTATCGCCTCGTCAACGACGAAAATTCCAGCGCCGGCCTCAAGCCTCCTGATCCGACCAACAAAAAAGCCTCCCTAAGGCTGGATGACTGGGTTTTGTGTCGGATTTACAAGAAGAACAATGCGCAGAGGCCTATGATGGAGTGTGATCATCACAAGGAGGAGGACTCTACGACTACCAACTCGATGGAGGGTATTTTCGTCCAGTCAATGCCGAAGCCATCGCCGCCGAAGCCTACTAACTACACGGCGTTGCTGGAAAACGACGAGGACAATTTCTTCGAAGGGATATTATCGAGTGAAGGCGTGCAAAACAGTAGTCATTCCAACCTTTCCCATCAGTTCATGTCAAGCTCGAAAAGCGACGTCGTAATGCCTGCGAACAACCACACCTCCAAGCGTCAGCTTGCGTCGCCGTTTTGGAACGAAGCGGGGGGATCATCATCGATGGGGACTAATTCATCGTCGAGCAAGAGGTTTCATACTGATCTCAATAGCGGTGGTGGCAGTGGAGGTGGAGGTGGGGTTGATGAAAGCAACACCTCTTTTGTTTCTATGCTCAACCAGCTACCTCAAAACGCGGCGTTTCACCACAACTCGCTTCTTGGGTCGCTTGGGGATGGGGTTTTGCGCCCACAGTTTCATCTTCCCAGTATGAATTGGAACTCATAA

Protein Analysis

361

Amino Acids

39.74

Weight (kDa)

7.24

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 16 - 142 1.4e-51 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010797)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61110
fragaria_vesca FvH4_3g04630
malus_domestica MD05G1321800.v1.1 MD05G1321900.v1.1 MD10G1299900.v1.1
prunus_persica Prupe.4G040900_v2.0.a1 Prupe.4G040900_v2.0.a1
pyrus_communis pycom05g29620 pycom10g25260
rosa_chinensis RchiOBHm_Chr5g0007561
rosa_laevigata RLG00000031468
rosa_multiflora Rmu_ssc0000182.1_g000018
rosa_roxburghii Rroxscaffold_1G00068840
rosa_rugosa Rorug04G0428600 Rorug04G0428700
rosa_samantha Rh5AG056300 Rh5BG053800 Rh5CG063600 Rh5DG052800
rosa_wichuraiana Rw5G005390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 783
Acc16I TGCGCA 1 cut(s) 540
AccBSI CCGCTC 2 cut(s) 119, 269
AccI GTMKAC 1 cut(s) 150
AccII CGCG 1 cut(s) 995
AclWI GGATC 3 cut(s) 161, 461, 859
AcsI RAATTY 1 cut(s) 439
AcyI GRCGYC 2 cut(s) 345, 780
AfaI GTAC 2 cut(s) 158, 242
AfiI CCNNNNNNNGG 6 cut(s) 57, 198, 234, 386, 492, 496
AluBI AGCT 8 cut(s) 43, 82, 178, 254, 356, 768, 820, 982
AluI AGCT 8 cut(s) 43, 82, 178, 254, 356, 768, 820, 982
Alw21I GWGCWC 1 cut(s) 11
AlwI GGATC 3 cut(s) 161, 461, 859
Ama87I CYCGRG 2 cut(s) 50, 277
AoxI GGCC 4 cut(s) 189, 257, 451, 545
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 439
ArsI GACNNNNNNTTYG 4 cut(s) 677, 709, 718, 750
AspLEI GCGC 3 cut(s) 449, 541, 1047
AsuC2I CCSGG 2 cut(s) 51, 52
AsuHPI GGTGA 3 cut(s) 26, 124, 995
AsuII TTCGAA 1 cut(s) 696
AvaI CYCGRG 2 cut(s) 50, 277
AxyI CCTNAGG 1 cut(s) 491
BaeI ACNNNNGTAYC 2 cut(s) 224, 257
BauI CACGAG 1 cut(s) 413
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 52
BccI CCATC 7 cut(s) 143, 547, 595, 643, 759, 856, 1028
BceAI ACGGC 2 cut(s) 678, 814
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BclI TGATCA 1 cut(s) 562
BcnI CCSGG 2 cut(s) 51, 52
BfaI CTAG 1 cut(s) 255
BfoI RGCGCY 1 cut(s) 450
BisI GCNGC 5 cut(s) 41, 111, 270, 641, 996
BlsI GCNGC 5 cut(s) 42, 112, 271, 642, 997
Bme1390I CCNGG 2 cut(s) 51, 52
BmeT110I CYCGRG 2 cut(s) 50, 277
BmiI GGNNCC 3 cut(s) 56, 62, 301
BmrFI CCNGG 2 cut(s) 51, 52
BmrI ACTGGG 2 cut(s) 514, 1059
BmuI ACTGGG 2 cut(s) 514, 1059
BplI GAGNNNNNCTC 2 cut(s) 566, 598
Bpu14I TTCGAA 1 cut(s) 696
BpuEI CTTGAG 2 cut(s) 83, 440
BpuMI CCSGG 2 cut(s) 51, 52
Bsa29I ATCGAT 1 cut(s) 860
BsaBI GATNNNNATC 1 cut(s) 856
BsaHI GRCGYC 2 cut(s) 345, 780
BsaJI CCNNGG 4 cut(s) 50, 144, 170, 276
BsaWI WCCGGW 4 cut(s) 23, 57, 127, 296
BsaXI ACNNNNNCTCC 8 cut(s) 5, 35, 194, 224, 791, 821, 924, 954
Bsc4I CCNNNNNNNGG 6 cut(s) 57, 198, 234, 386, 492, 496
Bse118I RCCGGY 1 cut(s) 449
Bse1I ACTGG 3 cut(s) 509, 619, 1065
Bse21I CCTNAGG 1 cut(s) 491
Bse8I GATNNNNATC 1 cut(s) 856
BseCI ATCGAT 1 cut(s) 860
BseDI CCNNGG 4 cut(s) 50, 144, 170, 276
BseGI GGATG 2 cut(s) 505, 1039
BseJI GATNNNNATC 1 cut(s) 856
BseLI CCNNNNNNNGG 6 cut(s) 57, 198, 234, 386, 492, 496
BseNI ACTGG 3 cut(s) 509, 619, 1065
BseRI GAGGAG 2 cut(s) 92, 590
BseXI GCAGC 1 cut(s) 52
Bsh1236I CGCG 1 cut(s) 995
Bsh1285I CGRYCG 1 cut(s) 72
BshFI GGCC 4 cut(s) 191, 259, 453, 547
BshVI ATCGAT 1 cut(s) 860
BsiEI CGRYCG 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 11
BsiHKCI CYCGRG 2 cut(s) 50, 277
BsiSI CCGG 6 cut(s) 24, 51, 58, 128, 297, 450
BslFI GGGAC 2 cut(s) 210, 880
BslI CCNNNNNNNGG 6 cut(s) 57, 198, 234, 386, 492, 496
BsmFI GGGAC 2 cut(s) 210, 880
BsnI GGCC 4 cut(s) 191, 259, 453, 547
BsoBI CYCGRG 2 cut(s) 50, 277
Bsp119I TTCGAA 1 cut(s) 696
Bsp1286I GDGCHC 1 cut(s) 11
Bsp1407I TGTACA 1 cut(s) 156
Bsp143I GATC 5 cut(s) 166, 466, 562, 851, 901
Bsp19I CCATGG 1 cut(s) 170
BspANI GGCC 4 cut(s) 191, 259, 453, 547
BspDI ATCGAT 1 cut(s) 860
BspFNI CGCG 1 cut(s) 995
BspLI GGNNCC 3 cut(s) 56, 62, 301
BspPI GGATC 3 cut(s) 161, 461, 859
BspT104I TTCGAA 1 cut(s) 696
BsrBI CCGCTC 2 cut(s) 119, 269
BsrFI RCCGGY 1 cut(s) 449
BsrGI TGTACA 1 cut(s) 156
BsrI ACTGG 3 cut(s) 509, 619, 1065
BssAI RCCGGY 1 cut(s) 449
BssECI CCNNGG 4 cut(s) 50, 144, 170, 276
BssMI GATC 5 cut(s) 166, 466, 562, 851, 901
BssNI GRCGYC 2 cut(s) 345, 780
BssSI CACGAG 1 cut(s) 413
BssT1I CCWWGG 1 cut(s) 170
Bst2BI CACGAG 1 cut(s) 413
Bst4CI ACNGT 3 cut(s) 371, 731, 1053
BstACI GRCGYC 2 cut(s) 345, 780
BstAUI TGTACA 1 cut(s) 156
BstBI TTCGAA 1 cut(s) 696
BstC8I GCNNGC 4 cut(s) 451, 722, 792, 822
BstDEI CTNAG 1 cut(s) 491
BstDSI CCRYGG 1 cut(s) 170
BstEII GGTNACC 2 cut(s) 32, 130
BstENI CCTNNNNNAGG 1 cut(s) 490
BstF5I GGATG 2 cut(s) 505, 1039
BstFNI CGCG 1 cut(s) 995
BstH2I RGCGCY 1 cut(s) 450
BstHHI GCGC 3 cut(s) 449, 541, 1047
BstKTI GATC 5 cut(s) 169, 469, 565, 854, 904
BstMBI GATC 5 cut(s) 166, 466, 562, 851, 901
BstMCI CGRYCG 1 cut(s) 72
BstMWI GCNNNNNNNGC 7 cut(s) 116, 640, 646, 774, 826, 918, 979
BstPI GGTNACC 2 cut(s) 32, 130
BstSCI CCNGG 2 cut(s) 49, 50
BstUI CGCG 1 cut(s) 995
BstV1I GCAGC 1 cut(s) 52
BstXI CCANNNNNNTGG 1 cut(s) 601
Bsu15I ATCGAT 1 cut(s) 860
Bsu36I CCTNAGG 1 cut(s) 491
BsuRI GGCC 4 cut(s) 191, 259, 453, 547
BsuTUI ATCGAT 1 cut(s) 860
BtgI CCRYGG 1 cut(s) 170
BtgZI GCGATG 2 cut(s) 124, 621
BtsCI GGATG 2 cut(s) 505, 1039
BtsI GCAGTG 1 cut(s) 928
BtsIMutI CAGTG 1 cut(s) 928
Cac8I GCNNGC 4 cut(s) 451, 722, 792, 822
CfoI GCGC 3 cut(s) 449, 541, 1047
Cfr10I RCCGGY 1 cut(s) 449
Cfr9I CCCGGG 1 cut(s) 50
ClaI ATCGAT 1 cut(s) 860
CseI GACGC 3 cut(s) 334, 803, 813
Csp6I GTAC 2 cut(s) 157, 241
CspCI CAANNNNNGTGG 2 cut(s) 895, 930
CviAII CATG 2 cut(s) 171, 760
CviQI GTAC 2 cut(s) 157, 241
DdeI CTNAG 1 cut(s) 491
DpnI GATC 5 cut(s) 168, 468, 564, 853, 903
DpnII GATC 5 cut(s) 166, 466, 562, 851, 901
Eco130I CCWWGG 1 cut(s) 170
Eco147I AGGCCT 1 cut(s) 547
Eco81I CCTNAGG 1 cut(s) 491
Eco88I CYCGRG 2 cut(s) 50, 277
Eco91I GGTNACC 2 cut(s) 32, 130
EcoNI CCTNNNNNAGG 1 cut(s) 490
EcoO65I GGTNACC 2 cut(s) 32, 130
EcoT14I CCWWGG 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 2 cut(s) 174, 763
FaiI YATR 8 cut(s) 172, 410, 551, 761, 897, 971, 1070, 1084
FaqI GGGAC 2 cut(s) 210, 880
FatI CATG 2 cut(s) 170, 759
FauI CCCGC 2 cut(s) 45, 838
FbaI TGATCA 1 cut(s) 562
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 5 cut(s) 41, 111, 270, 641, 996
FokI GGATG 2 cut(s) 512, 1046
Fsp4HI GCNGC 5 cut(s) 41, 111, 270, 641, 996
FspBI CTAG 1 cut(s) 255
FspI TGCGCA 1 cut(s) 540
GlaI GCGC 3 cut(s) 448, 540, 1046
GluI GCNGC 5 cut(s) 41, 111, 270, 641, 996
HaeII RGCGCY 1 cut(s) 450
HaeIII GGCC 4 cut(s) 191, 259, 453, 547
HapII CCGG 6 cut(s) 24, 51, 58, 128, 297, 450
HgaI GACGC 3 cut(s) 334, 803, 813
HhaI GCGC 3 cut(s) 449, 541, 1047
Hin1I GRCGYC 2 cut(s) 345, 780
Hin1II CATG 2 cut(s) 174, 763
Hin6I GCGC 3 cut(s) 447, 539, 1045
HinP1I GCGC 3 cut(s) 447, 539, 1045
HincII GTYRAC 2 cut(s) 151, 430
HindII GTYRAC 2 cut(s) 151, 430
HinfI GANTC 5 cut(s) 14, 262, 313, 390, 581
HpaII CCGG 6 cut(s) 24, 51, 58, 128, 297, 450
HphI GGTGA 3 cut(s) 26, 124, 995
Hpy166II GTNNAC 3 cut(s) 91, 151, 430
Hpy188I TCNGA 3 cut(s) 318, 471, 519
Hpy188III TCNNGA 3 cut(s) 100, 349, 464
Hpy8I GTNNAC 3 cut(s) 91, 151, 430
Hpy99I CGWCG 7 cut(s) 77, 437, 683, 782, 785, 829, 883
HpyAV CCTTC 2 cut(s) 692, 710
HpyCH4III ACNGT 3 cut(s) 371, 731, 1053
HpyCH4IV ACGT 2 cut(s) 194, 780
HpyCH4V TGCA 2 cut(s) 412, 724
HpyF10VI GCNNNNNNNGC 7 cut(s) 116, 640, 646, 774, 826, 918, 979
HpyF3I CTNAG 1 cut(s) 491
HpySE526I ACGT 2 cut(s) 194, 780
Hsp92I GRCGYC 2 cut(s) 345, 780
Hsp92II CATG 2 cut(s) 174, 763
HspAI GCGC 3 cut(s) 447, 539, 1045
KroI GCCGGC 1 cut(s) 449
KroNI GCCGGC 1 cut(s) 451
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 5 cut(s) 166, 466, 562, 851, 901
LmnI GCTCC 6 cut(s) 48, 79, 124, 175, 202, 251
Lsp1109I GCAGC 1 cut(s) 52
MaeI CTAG 1 cut(s) 255
MaeII ACGT 2 cut(s) 194, 780
MaeIII GTNAC 2 cut(s) 32, 130
MalI GATC 5 cut(s) 168, 468, 564, 853, 903
MbiI CCGCTC 2 cut(s) 119, 269
MboI GATC 5 cut(s) 166, 466, 562, 851, 901
MboII GAAGA 4 cut(s) 115, 541, 685, 1052
MfeI CAATTG 1 cut(s) 400
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 5 cut(s) 400, 439, 688, 871, 1072
MlyI GAGTC 2 cut(s) 8, 575
MmeI TCCRAC 3 cut(s) 494, 497, 765
MroNI GCCGGC 1 cut(s) 449
MspI CCGG 6 cut(s) 24, 51, 58, 128, 297, 450
MspR9I CCNGG 2 cut(s) 51, 52
MunI CAATTG 1 cut(s) 400
MvnI CGCG 1 cut(s) 995
MwoI GCNNNNNNNGC 7 cut(s) 116, 640, 646, 774, 826, 918, 979
NaeI GCCGGC 1 cut(s) 451
NciI CCSGG 2 cut(s) 51, 52
NcoI CCATGG 1 cut(s) 170
NdeII GATC 5 cut(s) 166, 466, 562, 851, 901
NgoMIV GCCGGC 1 cut(s) 449
NlaIII CATG 2 cut(s) 174, 763
NlaIV GGNNCC 3 cut(s) 56, 62, 301
NmeAIII GCCGAG 1 cut(s) 169
NmuCI GTSAC 2 cut(s) 32, 130
NsbI TGCGCA 1 cut(s) 540
NspV TTCGAA 1 cut(s) 696
PceI AGGCCT 1 cut(s) 547
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 432
PdiI GCCGGC 1 cut(s) 451
PfeI GAWTC 3 cut(s) 262, 313, 390
PkrI GCNGC 5 cut(s) 42, 112, 271, 642, 997
PleI GAGTC 2 cut(s) 8, 575
PpsI GAGTC 2 cut(s) 8, 575
PspEI GGTNACC 2 cut(s) 32, 130
PspN4I GGNNCC 3 cut(s) 56, 62, 301
RsaI GTAC 2 cut(s) 158, 242
RsaNI GTAC 2 cut(s) 157, 241
SalI GTCGAC 1 cut(s) 149
SatI GCNGC 5 cut(s) 41, 111, 270, 641, 996
Sau3AI GATC 5 cut(s) 166, 466, 562, 851, 901
SchI GAGTC 2 cut(s) 8, 575
ScrFI CCNGG 2 cut(s) 51, 52
SduI GDGCHC 1 cut(s) 11
SfuI TTCGAA 1 cut(s) 696
SmaI CCCGGG 1 cut(s) 52
SmlI CTYRAG 2 cut(s) 98, 455
SmoI CTYRAG 2 cut(s) 98, 455
Sse9I AATT 5 cut(s) 400, 439, 688, 871, 1072
SseBI AGGCCT 1 cut(s) 547
SspMI CTAG 1 cut(s) 255
StuI AGGCCT 1 cut(s) 547
StyD4I CCNGG 2 cut(s) 49, 50
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 3 cut(s) 371, 731, 1053
TaiI ACGT 2 cut(s) 197, 783
TaqII GACCGA 1 cut(s) 86
TasI AATT 5 cut(s) 400, 439, 688, 871, 1072
TatI WGTACW 1 cut(s) 156
TauI GCSGC 4 cut(s) 113, 272, 643, 998
TfiI GAWTC 3 cut(s) 262, 313, 390
TscAI CASTG 1 cut(s) 928
TseFI GTSAC 2 cut(s) 32, 130
TseI GCWGC 1 cut(s) 40
Tsp45I GTSAC 2 cut(s) 32, 130
TspDTI ATGAA 6 cut(s) 748, 864, 884, 960, 1046, 1085
TspGWI ACGGA 4 cut(s) 26, 250, 264, 342
TspMI CCCGGG 1 cut(s) 50
TspRI CASTG 1 cut(s) 928
XagI CCTNNNNNAGG 1 cut(s) 490
XapI RAATTY 1 cut(s) 439
XmaI CCCGGG 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 150
XspI CTAG 1 cut(s) 255
ZraI GACGTC 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.