Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010797

Physical Location & Seq

Genomic Coordinates Forward (+)

44931475 .. 44932720

Gene Structure 1246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1321800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAGAGCACAGATTCATCATCGGGTTCACAGCACCCGCAGCTCCCACCGGGGTTCCGCTTCCACCCGACAGACGAAGAACTGGTGGTCCATTACCTCAAGAAAAAGGCCGCCTCCATCCCGCTTCCAGTCACCATCATCGCGGAAGTAGACTTGTACAAGTTTGATCCATGGGAACTACCAAGTAAGGCAACGTTTGGGGAGCAAGAGTGGTATTTTTTCACTCCAAGGGACCGGAAGTACCCGAATGGGGCACGGCCAAACAGGGCAGCAACTTCAGGATATTGGAAGGCAACTGGGACCGATAAGCCTATTCTAACATCAATCGGAAACCACAACGTCGGTGTGAAAAAAGCTCTTGTTTTCTATGGAGGGAAGCCCCCAAAAGGGATTAAAACCAATTGGATTATGCATGAGTATCGCCTTATCAACAACACCACAACCGCCAAAATGAGTTTTAGTACCACTAAGCCTTCTGATGCAGCTAACAAGAAAGCCTCCCTAAGGGTATGTGCTTTTTTTGTACAACATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009908 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

179

Amino Acids

20.0

Weight (kDa)

9.63

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	16 - 142	1.7e-51	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61110
fragaria_vesca	FvH4_3g04630
malus_domestica	MD05G1321800.v1.1 MD05G1321900.v1.1 MD10G1299900.v1.1
prunus_persica	Prupe.4G040900_v2.0.a1 Prupe.4G040900_v2.0.a1
pyrus_communis	pycom05g29620 pycom10g25260
rosa_chinensis	RchiOBHm_Chr5g0007561
rosa_laevigata	RLG00000031468
rosa_multiflora	Rmu_ssc0000182.1_g000018
rosa_roxburghii	Rroxscaffold_1G00068840
rosa_rugosa	Rorug04G0428600 Rorug04G0428700
rosa_samantha	Rh5AG056300 Rh5BG053800 Rh5CG063600 Rh5DG052800
rosa_wichuraiana	Rw5G005390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	1 cut(s)	143
AciI	CCGC	6 cut(s)	38, 58, 111, 122, 143, 444
AclI	AACGTT	1 cut(s)	194
AclWI	GGATC	1 cut(s)	161
AcoI	YGGCCR	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	4 cut(s)	158, 242, 463, 525
AfiI	CCNNNNNNNGG	4 cut(s)	250, 386, 387, 504
AloI	GAACNNNNNNTCC	2 cut(s)	72, 104
AluBI	AGCT	3 cut(s)	43, 356, 485
AluI	AGCT	3 cut(s)	43, 356, 485
Alw21I	GWGCWC	1 cut(s)	11
AlwI	GGATC	1 cut(s)	161
AoxI	GGCC	2 cut(s)	108, 257
ApeKI	GCWGC	3 cut(s)	40, 269, 482
AspS9I	GGNCC	3 cut(s)	88, 232, 300
AsuC2I	CCSGG	1 cut(s)	51
AsuHPI	GGTGA	1 cut(s)	124
AvaII	GGWCC	3 cut(s)	88, 232, 300
AxyI	CCTNAGG	1 cut(s)	503
BaeGI	GKGCMC	1 cut(s)	256
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	3 cut(s)	52, 281, 494
BccI	CCATC	2 cut(s)	125, 143
BceAI	ACGGC	1 cut(s)	272
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BcnI	CCSGG	1 cut(s)	51
BisI	GCNGC	4 cut(s)	41, 111, 270, 483
BlsI	GCNGC	4 cut(s)	42, 112, 271, 484
Bme1390I	CCNGG	1 cut(s)	51
Bme18I	GGWCC	3 cut(s)	88, 232, 300
BmgT120I	GGNCC	3 cut(s)	88, 232, 300
BmiI	GGNNCC	3 cut(s)	56, 233, 301
BmrFI	CCNGG	1 cut(s)	51
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	1 cut(s)	469
BmuI	ACTGGG	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	83
BpuMI	CCSGG	1 cut(s)	51
BsaJI	CCNNGG	3 cut(s)	50, 170, 227
BsaWI	WCCGGW	1 cut(s)	234
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	4 cut(s)	250, 386, 387, 504
Bse1I	ACTGG	3 cut(s)	87, 128, 301
Bse21I	CCTNAGG	1 cut(s)	503
BseDI	CCNNGG	3 cut(s)	50, 170, 227
BseGI	GGATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	4 cut(s)	250, 386, 387, 504
BseNI	ACTGG	3 cut(s)	87, 128, 301
BseSI	GKGCMC	1 cut(s)	256
BseXI	GCAGC	3 cut(s)	52, 281, 494
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	2 cut(s)	110, 259
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	2 cut(s)	50, 235
BslFI	GGGAC	2 cut(s)	245, 313
BslI	CCNNNNNNNGG	4 cut(s)	250, 386, 387, 504
BsmFI	GGGAC	2 cut(s)	245, 313
BsnI	GGCC	2 cut(s)	110, 259
Bsp1286I	GDGCHC	2 cut(s)	11, 256
Bsp1407I	TGTACA	2 cut(s)	156, 523
Bsp143I	GATC	1 cut(s)	166
Bsp19I	CCATGG	1 cut(s)	170
BspACI	CCGC	6 cut(s)	38, 58, 111, 122, 143, 444
BspANI	GGCC	2 cut(s)	110, 259
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	3 cut(s)	56, 233, 301
BspPI	GGATC	1 cut(s)	161
BsrGI	TGTACA	2 cut(s)	156, 523
BsrI	ACTGG	3 cut(s)	87, 128, 301
BssECI	CCNNGG	3 cut(s)	50, 170, 227
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	2 cut(s)	170, 227
BstAUI	TGTACA	2 cut(s)	156, 523
BstDEI	CTNAG	2 cut(s)	468, 503
BstDSI	CCRYGG	1 cut(s)	170
BstENI	CCTNNNNNAGG	1 cut(s)	502
BstF5I	GGATG	1 cut(s)	117
BstFNI	CGCG	1 cut(s)	143
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	49
BstSLI	GKGCMC	1 cut(s)	256
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	3 cut(s)	52, 281, 494
Bsu36I	CCTNAGG	1 cut(s)	503
BsuRI	GGCC	2 cut(s)	110, 259
BtgI	CCRYGG	1 cut(s)	170
BtgZI	GCGATG	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	117
Cfr13I	GGNCC	3 cut(s)	88, 232, 300
Csp6I	GTAC	4 cut(s)	157, 241, 462, 524
CviAII	CATG	2 cut(s)	171, 413
CviJI	RGCY	9 cut(s)	43, 110, 259, 310, 356, 379, 472, 485, 497
CviKI_1	RGCY	9 cut(s)	43, 110, 259, 310, 356, 379, 472, 485, 497
CviQI	GTAC	4 cut(s)	157, 241, 462, 524
DdeI	CTNAG	2 cut(s)	468, 503
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	257
Eco130I	CCWWGG	2 cut(s)	170, 227
Eco47I	GGWCC	3 cut(s)	88, 232, 300
Eco57I	CTGAAG	1 cut(s)	261
Eco81I	CCTNAGG	1 cut(s)	503
EcoNI	CCTNNNNNAGG	1 cut(s)	502
EcoT14I	CCWWGG	2 cut(s)	170, 227
EcoT22I	ATGCAT	1 cut(s)	414
ErhI	CCWWGG	2 cut(s)	170, 227
FaeI	CATG	2 cut(s)	174, 416
FaiI	YATR	6 cut(s)	172, 369, 410, 414, 511, 531
FaqI	GGGAC	2 cut(s)	245, 313
FatI	CATG	2 cut(s)	170, 412
FauI	CCCGC	2 cut(s)	45, 129
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	4 cut(s)	41, 111, 270, 483
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	4 cut(s)	41, 111, 270, 483
GluI	GCNGC	4 cut(s)	41, 111, 270, 483
HaeIII	GGCC	2 cut(s)	110, 259
HapII	CCGG	2 cut(s)	50, 235
Hin1II	CATG	2 cut(s)	174, 416
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	2 cut(s)	50, 235
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	2 cut(s)	29, 151
Hpy188I	TCNGA	2 cut(s)	329, 478
Hpy188III	TCNNGA	2 cut(s)	100, 279
Hpy8I	GTNNAC	2 cut(s)	29, 151
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	2 cut(s)	283, 483
HpyCH4IV	ACGT	2 cut(s)	194, 339
HpyCH4V	TGCA	2 cut(s)	412, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	2 cut(s)	468, 503
HpySE526I	ACGT	2 cut(s)	194, 339
Hsp92II	CATG	2 cut(s)	174, 416
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	2 cut(s)	48, 202
LpnPI	CCDG	7 cut(s)	63, 68, 141, 248, 250, 264, 282
Lsp1109I	GCAGC	3 cut(s)	52, 281, 494
LweI	GCATC	1 cut(s)	469
MaeII	ACGT	2 cut(s)	194, 339
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	1 cut(s)	89
MfeI	CAATTG	1 cut(s)	400
MhlI	GDGCHC	2 cut(s)	11, 256
MluCI	AATT	1 cut(s)	400
MnlI	CCTC	4 cut(s)	107, 124, 365, 508
Mph1103I	ATGCAT	1 cut(s)	414
MseI	TTAA	1 cut(s)	393
MspI	CCGG	2 cut(s)	50, 235
MspR9I	CCNGG	1 cut(s)	51
MunI	CAATTG	1 cut(s)	400
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	40
NciI	CCSGG	1 cut(s)	51
NcoI	CCATGG	1 cut(s)	170
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	2 cut(s)	174, 416
NlaIV	GGNNCC	3 cut(s)	56, 233, 301
NmuCI	GTSAC	1 cut(s)	130
NsiI	ATGCAT	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	4 cut(s)	42, 112, 271, 484
Psp1406I	AACGTT	1 cut(s)	194
PspN4I	GGNNCC	3 cut(s)	56, 233, 301
PspPI	GGNCC	3 cut(s)	88, 232, 300
RsaI	GTAC	4 cut(s)	158, 242, 463, 525
RsaNI	GTAC	4 cut(s)	157, 241, 462, 524
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	4 cut(s)	41, 111, 270, 483
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	3 cut(s)	88, 232, 300
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	2 cut(s)	11, 256
SetI	ASST	6 cut(s)	45, 99, 197, 342, 358, 487
SfaNI	GCATC	1 cut(s)	469
SinI	GGWCC	3 cut(s)	88, 232, 300
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	1 cut(s)	400
SsiI	CCGC	6 cut(s)	38, 58, 111, 122, 143, 444
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	2 cut(s)	170, 227
TaiI	ACGT	2 cut(s)	197, 342
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	1 cut(s)	400
TatI	WGTACW	2 cut(s)	156, 523
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	3 cut(s)	40, 269, 482
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	6
VpaK11BI	GGWCC	3 cut(s)	88, 232, 300
XagI	CCTNNNNNAGG	1 cut(s)	502
XmiI	GTMKAC	1 cut(s)	150
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.