Rmu_ssc0000182.1_g000018
NAC Family

NAC transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000182.1
Physical Location & Seq
Reverse (-)
86229 .. 87946
1718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000182.1_g000018.1.cds

Sequence Viewer

Length: 1509 bp
atgaaaaagcgtacaggcagttccaaacccccgacccccaaaacccgcctcgtcccgtttcccattttccttctctctttaaccctcttcgtctcaccactccctcgtggtccccacttcccacttgtcgccaaaccattgcgtcatccctccacgtgtcgccctctcaccggcgacgcttggttctttatattgctacctaaccgccaccactctgtgcagcctcaccacttctcctcctccccaattcttcatcaccaatttacgcctatatatttttttttcgtattcattactttcgattctccgatggagagcacggactcgtcctccggttctggtcacccgcagctccctgaattcttcatcaccaatttacgcctatatattttttttttcgtattcattactttcgattctccgatggagagcacggactcgtcctccggttctggtcacccgcagctccctcccgggttccggttccacccgaccgacgaggagctggttgtccactacctcaagaagaaagccgcctccgctccgcttccggtcaccatcatcgccgaggtcgacttgtacaagttcgatccatgggagctaccgagtaaggccacgtttggggagcaggagtggtattttttcagtcccagagaccggaagtacccgaacggagctaggccgaaccgagcggcgacctcggggtattggaaagccaccggaaccgacaagccgattctgacctcgaacggaaaccaaaaggtcggcgtcaagaaagctctggttttctacggtggcaaaccgccgaaaggaatcaaatccaattggattatgcacgagtatcgcctcgtcaacgacgacaattccggcgccggcctcaagcctcctgatccgaccaacaaaaaagcctccctaaggctggatgactgggttttgtgtcggatttacaagaagaacaatgcgcagaggcctatgatggagtgtgatcatcacaaggaggaggactctacgactaccaactcgatggagggtattttcgtccagtcaatgccgaagccatcggcgccgaagcctactaactacacggcgttgctggaaaacgacgaggacaatttcttcgacgggatattatcgagtgaaggcttgcaaaacagtagtcattccaacctttcccatcagttcatgtcaagctcgaaaagcgacgtcgtaatgcctgcgaacaaccacacctccaagcgtcagcttgcgtcgccgttttggaacgaagcggggggatcatcatcgatggggactaattcatcgtcgagcaagaggtttcatactgatctcaatagcggtggtggcagtggaggtggaggtggggttgatgaaagcaacacctcttttgtttctatgctcaaccagctgcctcaaaacgcagcgtttcaccacaactcgcttcttgggtcgcttggggatggggttttgcgcccacagtttcatcttcccagtatgaattggaactcataa

Protein Analysis

502

Amino Acids

55.83

Weight (kDa)

8.98

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010797)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1206
Acc16I TGCGCA 1 cut(s) 963
AccB1I GGYRCC 2 cut(s) 869, 1063
AccBSI CCGCTC 2 cut(s) 542, 692
AccI GTMKAC 1 cut(s) 573
AclWI GGATC 3 cut(s) 584, 884, 1282
AcsI RAATTY 1 cut(s) 359
AcvI CACGTG 1 cut(s) 156
AcyI GRCGYC 4 cut(s) 768, 870, 1064, 1203
AdeI CACNNNGTG 1 cut(s) 217
AfaI GTAC 3 cut(s) 13, 581, 665
AfiI CCNNNNNNNGG 7 cut(s) 170, 480, 621, 657, 809, 915, 919
AflIII ACRYGT 1 cut(s) 155
AluBI AGCT 9 cut(s) 352, 466, 505, 601, 677, 779, 1191, 1243, 1405
AluI AGCT 9 cut(s) 352, 466, 505, 601, 677, 779, 1191, 1243, 1405
Alw21I GWGCWC 2 cut(s) 320, 434
Alw26I GTCTC 2 cut(s) 97, 648
AlwI GGATC 3 cut(s) 584, 884, 1282
Ama87I CYCGRG 2 cut(s) 473, 700
AoxI GGCC 4 cut(s) 612, 680, 874, 968
ApeKI GCWGC 5 cut(s) 220, 349, 463, 1405, 1418
ApoI RAATTY 1 cut(s) 359
ArsI GACNNNNNNTTYG 4 cut(s) 1100, 1132, 1141, 1173
AspLEI GCGC 4 cut(s) 872, 964, 1066, 1470
AspS9I GGNCC 1 cut(s) 110
AsuC2I CCSGG 2 cut(s) 474, 475
AsuHPI GGTGA 9 cut(s) 87, 160, 218, 248, 335, 361, 449, 547, 1418
AvaI CYCGRG 2 cut(s) 473, 700
AvaII GGWCC 1 cut(s) 110
AxyI CCTNAGG 1 cut(s) 914
BanI GGYRCC 2 cut(s) 869, 1063
BauI CACGAG 2 cut(s) 105, 836
BbrPI CACGTG 1 cut(s) 156
Bbv12I GWGCWC 2 cut(s) 320, 434
BbvI GCAGC 5 cut(s) 232, 361, 475, 1392, 1430
BccI CCATC 9 cut(s) 304, 418, 566, 970, 1018, 1066, 1182, 1279, 1451
BceAI ACGGC 2 cut(s) 1101, 1237
BcgI CGANNNNNNTGC 2 cut(s) 824, 858
BclI TGATCA 1 cut(s) 985
BcnI CCSGG 2 cut(s) 474, 475
BcoDI GTCTC 2 cut(s) 97, 648
BfaI CTAG 1 cut(s) 678
BfoI RGCGCY 2 cut(s) 873, 1067
BisI GCNGC 7 cut(s) 221, 350, 464, 534, 693, 1406, 1419
BlsI GCNGC 7 cut(s) 222, 351, 465, 535, 694, 1407, 1420
Bme1390I CCNGG 2 cut(s) 474, 475
Bme18I GGWCC 1 cut(s) 110
BmeT110I CYCGRG 2 cut(s) 473, 700
BmgT120I GGNCC 1 cut(s) 110
BmiI GGNNCC 6 cut(s) 112, 479, 485, 724, 871, 1065
BmrFI CCNGG 2 cut(s) 474, 475
BmrI ACTGGG 2 cut(s) 937, 1482
BmuI ACTGGG 2 cut(s) 937, 1482
BplI GAGNNNNNCTC 2 cut(s) 989, 1021
BpuEI CTTGAG 2 cut(s) 506, 863
BpuMI CCSGG 2 cut(s) 474, 475
Bsa29I ATCGAT 1 cut(s) 1283
BsaAI YACGTR 1 cut(s) 156
BsaBI GATNNNNATC 1 cut(s) 1279
BsaHI GRCGYC 4 cut(s) 768, 870, 1064, 1203
BsaI GGTCTC 1 cut(s) 648
BsaJI CCNNGG 4 cut(s) 473, 567, 593, 699
BsaWI WCCGGW 6 cut(s) 332, 446, 480, 550, 657, 719
Bsc4I CCNNNNNNNGG 7 cut(s) 170, 480, 621, 657, 809, 915, 919
Bse118I RCCGGY 2 cut(s) 170, 872
Bse1I ACTGG 3 cut(s) 932, 1042, 1488
Bse21I CCTNAGG 1 cut(s) 914
Bse3DI GCAATG 1 cut(s) 137
Bse8I GATNNNNATC 1 cut(s) 1279
BseCI ATCGAT 1 cut(s) 1283
BseDI CCNNGG 4 cut(s) 473, 567, 593, 699
BseGI GGATG 3 cut(s) 145, 928, 1462
BseJI GATNNNNATC 1 cut(s) 1279
BseLI CCNNNNNNNGG 7 cut(s) 170, 480, 621, 657, 809, 915, 919
BseMI GCAATG 1 cut(s) 137
BseNI ACTGG 3 cut(s) 932, 1042, 1488
BseRI GAGGAG 4 cut(s) 226, 229, 515, 1013
BseXI GCAGC 5 cut(s) 232, 361, 475, 1392, 1430
BsgI GTGCAG 1 cut(s) 239
Bsh1285I CGRYCG 1 cut(s) 495
BshFI GGCC 4 cut(s) 614, 682, 876, 970
BshNI GGYRCC 2 cut(s) 869, 1063
BshVI ATCGAT 1 cut(s) 1283
BsiEI CGRYCG 1 cut(s) 495
BsiHKAI GWGCWC 2 cut(s) 320, 434
BsiHKCI CYCGRG 2 cut(s) 473, 700
BslFI GGGAC 4 cut(s) 38, 96, 633, 1303
BslI CCNNNNNNNGG 7 cut(s) 170, 480, 621, 657, 809, 915, 919
BsmAI GTCTC 2 cut(s) 97, 648
BsmBI CGTCTC 1 cut(s) 97
BsmFI GGGAC 4 cut(s) 38, 96, 633, 1303
BsnI GGCC 4 cut(s) 614, 682, 876, 970
Bso31I GGTCTC 1 cut(s) 648
BsoBI CYCGRG 2 cut(s) 473, 700
Bsp1286I GDGCHC 2 cut(s) 320, 434
Bsp1407I TGTACA 1 cut(s) 579
Bsp143I GATC 5 cut(s) 589, 889, 985, 1274, 1324
Bsp19I CCATGG 1 cut(s) 593
BspANI GGCC 4 cut(s) 614, 682, 876, 970
BspDI ATCGAT 1 cut(s) 1283
BspLI GGNNCC 6 cut(s) 112, 479, 485, 724, 871, 1065
BspPI GGATC 3 cut(s) 584, 884, 1282
BspT107I GGYRCC 2 cut(s) 869, 1063
BspTNI GGTCTC 1 cut(s) 648
BsrBI CCGCTC 2 cut(s) 542, 692
BsrDI GCAATG 1 cut(s) 137
BsrFI RCCGGY 2 cut(s) 170, 872
BsrGI TGTACA 1 cut(s) 579
BsrI ACTGG 3 cut(s) 932, 1042, 1488
BssAI RCCGGY 2 cut(s) 170, 872
BssECI CCNNGG 4 cut(s) 473, 567, 593, 699
BssMI GATC 5 cut(s) 589, 889, 985, 1274, 1324
BssNI GRCGYC 4 cut(s) 768, 870, 1064, 1203
BssSI CACGAG 2 cut(s) 105, 836
BssT1I CCWWGG 1 cut(s) 593
Bst2BI CACGAG 2 cut(s) 105, 836
Bst4CI ACNGT 3 cut(s) 794, 1154, 1476
Bst6I CTCTTC 1 cut(s) 92
BstACI GRCGYC 4 cut(s) 768, 870, 1064, 1203
BstAUI TGTACA 1 cut(s) 579
BstBAI YACGTR 1 cut(s) 156
BstC8I GCNNGC 4 cut(s) 874, 1145, 1215, 1245
BstDEI CTNAG 1 cut(s) 914
BstDSI CCRYGG 1 cut(s) 593
BstEII GGTNACC 3 cut(s) 341, 455, 553
BstENI CCTNNNNNAGG 1 cut(s) 913
BstF5I GGATG 3 cut(s) 145, 928, 1462
BstH2I RGCGCY 2 cut(s) 873, 1067
BstHHI GCGC 4 cut(s) 872, 964, 1066, 1470
BstKTI GATC 5 cut(s) 592, 892, 988, 1277, 1327
BstMAI GTCTC 2 cut(s) 97, 648
BstMBI GATC 5 cut(s) 589, 889, 985, 1274, 1324
BstMCI CGRYCG 1 cut(s) 495
BstMWI GCNNNNNNNGC 6 cut(s) 539, 1063, 1197, 1249, 1341, 1402
BstPI GGTNACC 3 cut(s) 341, 455, 553
BstSCI CCNGG 2 cut(s) 472, 473
BstV1I GCAGC 5 cut(s) 232, 361, 475, 1392, 1430
BstXI CCANNNNNNTGG 1 cut(s) 1024
Bsu15I ATCGAT 1 cut(s) 1283
Bsu36I CCTNAGG 1 cut(s) 914
BsuRI GGCC 4 cut(s) 614, 682, 876, 970
BsuTUI ATCGAT 1 cut(s) 1283
BtgI CCRYGG 1 cut(s) 593
BtgZI GCGATG 1 cut(s) 547
BtsCI GGATG 3 cut(s) 145, 928, 1462
BtsI GCAGTG 1 cut(s) 1351
BtsIMutI CAGTG 1 cut(s) 1351
Cac8I GCNNGC 4 cut(s) 874, 1145, 1215, 1245
CfoI GCGC 4 cut(s) 872, 964, 1066, 1470
Cfr10I RCCGGY 2 cut(s) 170, 872
Cfr13I GGNCC 1 cut(s) 110
Cfr9I CCCGGG 1 cut(s) 473
ClaI ATCGAT 1 cut(s) 1283
CseI GACGC 5 cut(s) 131, 185, 757, 1226, 1236
Csp6I GTAC 3 cut(s) 12, 580, 664
CspCI CAANNNNNGTGG 2 cut(s) 1318, 1353
CviAII CATG 2 cut(s) 594, 1183
CviQI GTAC 3 cut(s) 12, 580, 664
DdeI CTNAG 1 cut(s) 914
DinI GGCGCC 2 cut(s) 871, 1065
DpnI GATC 5 cut(s) 591, 891, 987, 1276, 1326
DpnII GATC 5 cut(s) 589, 889, 985, 1274, 1324
DraIII CACNNNGTG 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 593
Eco147I AGGCCT 1 cut(s) 970
Eco31I GGTCTC 1 cut(s) 648
Eco47I GGWCC 1 cut(s) 110
Eco72I CACGTG 1 cut(s) 156
Eco81I CCTNAGG 1 cut(s) 914
Eco88I CYCGRG 2 cut(s) 473, 700
Eco91I GGTNACC 3 cut(s) 341, 455, 553
EcoNI CCTNNNNNAGG 1 cut(s) 913
EcoO65I GGTNACC 3 cut(s) 341, 455, 553
EcoRI GAATTC 1 cut(s) 359
EcoT14I CCWWGG 1 cut(s) 593
EgeI GGCGCC 2 cut(s) 871, 1065
EheI GGCGCC 2 cut(s) 871, 1065
ErhI CCWWGG 1 cut(s) 593
Esp3I CGTCTC 1 cut(s) 97
FaeI CATG 2 cut(s) 597, 1186
FaqI GGGAC 4 cut(s) 38, 96, 633, 1303
FatI CATG 2 cut(s) 593, 1182
FauI CCCGC 4 cut(s) 53, 354, 468, 1261
FbaI TGATCA 1 cut(s) 985
FblI GTMKAC 1 cut(s) 573
Fnu4HI GCNGC 7 cut(s) 221, 350, 464, 534, 693, 1406, 1419
FokI GGATG 3 cut(s) 132, 935, 1469
Fsp4HI GCNGC 7 cut(s) 221, 350, 464, 534, 693, 1406, 1419
FspBI CTAG 1 cut(s) 678
FspI TGCGCA 1 cut(s) 963
GlaI GCGC 4 cut(s) 871, 963, 1065, 1469
GluI GCNGC 7 cut(s) 221, 350, 464, 534, 693, 1406, 1419
HaeII RGCGCY 2 cut(s) 873, 1067
HaeIII GGCC 4 cut(s) 614, 682, 876, 970
HgaI GACGC 5 cut(s) 131, 185, 757, 1226, 1236
HhaI GCGC 4 cut(s) 872, 964, 1066, 1470
Hin1I GRCGYC 4 cut(s) 768, 870, 1064, 1203
Hin1II CATG 2 cut(s) 597, 1186
Hin6I GCGC 4 cut(s) 870, 962, 1064, 1468
HinP1I GCGC 4 cut(s) 870, 962, 1064, 1468
HincII GTYRAC 2 cut(s) 574, 853
HindII GTYRAC 2 cut(s) 574, 853
HinfI GANTC 7 cut(s) 302, 323, 416, 437, 736, 813, 1004
HphI GGTGA 9 cut(s) 87, 160, 218, 248, 335, 361, 449, 547, 1418
Hpy166II GTNNAC 3 cut(s) 514, 574, 853
Hpy188I TCNGA 5 cut(s) 309, 423, 741, 894, 942
Hpy188III TCNNGA 3 cut(s) 523, 772, 887
Hpy8I GTNNAC 3 cut(s) 514, 574, 853
Hpy99I CGWCG 9 cut(s) 179, 500, 860, 1106, 1124, 1205, 1208, 1252, 1306
HpyAV CCTTC 2 cut(s) 80, 1133
HpyCH4III ACNGT 3 cut(s) 794, 1154, 1476
HpyCH4IV ACGT 3 cut(s) 155, 617, 1203
HpyCH4V TGCA 3 cut(s) 220, 835, 1147
HpyF10VI GCNNNNNNNGC 6 cut(s) 539, 1063, 1197, 1249, 1341, 1402
HpyF3I CTNAG 1 cut(s) 914
HpySE526I ACGT 3 cut(s) 155, 617, 1203
Hsp92I GRCGYC 4 cut(s) 768, 870, 1064, 1203
Hsp92II CATG 2 cut(s) 597, 1186
HspAI GCGC 4 cut(s) 870, 962, 1064, 1468
KasI GGCGCC 2 cut(s) 869, 1063
KroI GCCGGC 1 cut(s) 872
KroNI GCCGGC 1 cut(s) 874
Ksp22I TGATCA 1 cut(s) 985
Kzo9I GATC 5 cut(s) 589, 889, 985, 1274, 1324
LmnI GCTCC 7 cut(s) 357, 471, 502, 547, 598, 625, 674
Lsp1109I GCAGC 5 cut(s) 232, 361, 475, 1392, 1430
MaeI CTAG 1 cut(s) 678
MaeII ACGT 3 cut(s) 155, 617, 1203
MaeIII GTNAC 3 cut(s) 341, 455, 553
MalI GATC 5 cut(s) 591, 891, 987, 1276, 1326
MbiI CCGCTC 2 cut(s) 542, 692
MboI GATC 5 cut(s) 589, 889, 985, 1274, 1324
MboII GAAGA 7 cut(s) 79, 242, 355, 538, 964, 1108, 1475
MfeI CAATTG 1 cut(s) 823
MhlI GDGCHC 2 cut(s) 320, 434
MluCI AATT 9 cut(s) 246, 260, 359, 373, 823, 862, 1111, 1294, 1495
Mly113I GGCGCC 2 cut(s) 870, 1064
MlyI GAGTC 3 cut(s) 317, 431, 998
MmeI TCCRAC 3 cut(s) 917, 920, 1188
MroNI GCCGGC 1 cut(s) 872
MseI TTAA 1 cut(s) 80
MspA1I CMGCKG 1 cut(s) 1405
MspR9I CCNGG 2 cut(s) 474, 475
MunI CAATTG 1 cut(s) 823
MwoI GCNNNNNNNGC 6 cut(s) 539, 1063, 1197, 1249, 1341, 1402
NaeI GCCGGC 1 cut(s) 874
NarI GGCGCC 2 cut(s) 870, 1064
NciI CCSGG 2 cut(s) 474, 475
NcoI CCATGG 1 cut(s) 593
NdeII GATC 5 cut(s) 589, 889, 985, 1274, 1324
NgoMIV GCCGGC 1 cut(s) 872
NlaIII CATG 2 cut(s) 597, 1186
NlaIV GGNNCC 6 cut(s) 112, 479, 485, 724, 871, 1065
NmeAIII GCCGAG 1 cut(s) 592
NmuCI GTSAC 3 cut(s) 341, 455, 553
NsbI TGCGCA 1 cut(s) 963
PceI AGGCCT 1 cut(s) 970
PcsI WCGNNNNNNNCGW 2 cut(s) 570, 855
PdiI GCCGGC 1 cut(s) 874
PfeI GAWTC 4 cut(s) 302, 416, 736, 813
PkrI GCNGC 7 cut(s) 222, 351, 465, 535, 694, 1407, 1420
PleI GAGTC 3 cut(s) 317, 431, 998
PluTI GGCGCC 2 cut(s) 873, 1067
PmaCI CACGTG 1 cut(s) 156
PmlI CACGTG 1 cut(s) 156
PpsI GAGTC 3 cut(s) 317, 431, 998
Ppu21I YACGTR 1 cut(s) 156
PspCI CACGTG 1 cut(s) 156
PspEI GGTNACC 3 cut(s) 341, 455, 553
PspN4I GGNNCC 6 cut(s) 112, 479, 485, 724, 871, 1065
PspPI GGNCC 1 cut(s) 110
PsrI GAACNNNNNNTAC 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 1405
RsaI GTAC 3 cut(s) 13, 581, 665
RsaNI GTAC 3 cut(s) 12, 580, 664
SalI GTCGAC 1 cut(s) 572
SaqAI TTAA 1 cut(s) 80
SatI GCNGC 7 cut(s) 221, 350, 464, 534, 693, 1406, 1419
Sau3AI GATC 5 cut(s) 589, 889, 985, 1274, 1324
Sau96I GGNCC 1 cut(s) 110
SchI GAGTC 3 cut(s) 317, 431, 998
ScrFI CCNGG 2 cut(s) 474, 475
SduI GDGCHC 2 cut(s) 320, 434
SfoI GGCGCC 2 cut(s) 871, 1065
SgrAI CRCCGGYG 1 cut(s) 170
SinI GGWCC 1 cut(s) 110
SmaI CCCGGG 1 cut(s) 475
SmlI CTYRAG 2 cut(s) 521, 878
SmoI CTYRAG 2 cut(s) 521, 878
Sse9I AATT 9 cut(s) 246, 260, 359, 373, 823, 862, 1111, 1294, 1495
SseBI AGGCCT 1 cut(s) 970
SspDI GGCGCC 2 cut(s) 869, 1063
SspMI CTAG 1 cut(s) 678
StuI AGGCCT 1 cut(s) 970
StyD4I CCNGG 2 cut(s) 472, 473
StyI CCWWGG 1 cut(s) 593
TaaI ACNGT 3 cut(s) 794, 1154, 1476
TaiI ACGT 3 cut(s) 158, 620, 1206
TaqII GACCGA 1 cut(s) 509
TasI AATT 9 cut(s) 246, 260, 359, 373, 823, 862, 1111, 1294, 1495
TatI WGTACW 1 cut(s) 579
TauI GCSGC 2 cut(s) 536, 695
TfiI GAWTC 4 cut(s) 302, 416, 736, 813
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TscAI CASTG 1 cut(s) 1351
TseFI GTSAC 3 cut(s) 341, 455, 553
TseI GCWGC 5 cut(s) 220, 349, 463, 1405, 1418
Tsp45I GTSAC 3 cut(s) 341, 455, 553
TspGWI ACGGA 4 cut(s) 335, 449, 687, 765
TspMI CCCGGG 1 cut(s) 473
TspRI CASTG 1 cut(s) 1351
VpaK11BI GGWCC 1 cut(s) 110
XagI CCTNNNNNAGG 1 cut(s) 913
XapI RAATTY 1 cut(s) 359
XmaI CCCGGG 1 cut(s) 473
XmiI GTMKAC 1 cut(s) 573
XspI CTAG 1 cut(s) 678
ZraI GACGTC 1 cut(s) 1204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.