Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010797

Physical Location & Seq

Genomic Coordinates Forward (+)

26941289 .. 26942723

Gene Structure 1435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g25260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGAGAGCACAAATTCATCATCGGTTTTACAGCACCCGCAGCTCCCGCCGGGGTTCCGGTTTCACCCGACGGACGAAGAACTGGTGGTCCATTACCTCAAGAAAAAGGCCGCCTCCATCCCGCTTCCGGTCGCCATCATCGCGGAGGTCGACTTGTACAAGTTTGATCCATGGGAACTGCCAAGTAAGGCGACGTTTGGGGAGCAAGAGTGGTATTTTTTCAGCCCAAGGGACCGGAAGTATCCGAATGGGGCGCGGCCAAACAGGGCAGCAACTTCAGGGTATTGGAAGGCGACTGGGACGGATAAGCCTGTTCTATCATCAGTCGGAAACCACAAAGTCGGTGTGAAAAAAGCTCTTGTTTTCTATGGAGGGAAGCCCCCAAAAGGGACTAAAACCAATTGGATTATGCACGAGTATCGGCTTGTCAACAACACCACCACCACCATCAACATGAGTTGTAGTACTACTAAGCCTCCTGATCCAGCTAACAAAAAACCATCCCTAAGGCTTGATGATTGGGTTTTGTGTCGGATTTATAAGAAAAACAAAGGGCCTGTGATGTCTTTAGATGGTGATCATTTTCTTCACAAGGCCGAGGACTCTAATAGTTCTATGGAAGATATGTTTCTCCACCCGTCAATACTGCCAACTCAAAAAACACCACCGCTGCCGCCGCTGCCATCATCAAAGCTGCCAACTACAGATTACACCGCGTTGCTAGAAAGCGATAATCACGAGAGCTATCTCGAGGGCATACTATCGTCAAGCGATCATCAACCAGGCTCTCACTCTCATCATCATCATCATGATCATGATCATGATCAGTTTGGCGCTATATCAACTTCCATCTCAAAAAGCAGCCTACCCTTGAAACGTCATCTTCCTTCGCCGTTTTGGAACGACGTGGGATCGATAGGGACTGCTGCTGCTACAACTACTTCATCGAGAAAAAAGTTTCATGCTGATCTCATCAATGAAAACAACTCCTTTGTTTCTATGCTGAATCAGACGCCACAGGGTACGGCACCGTTTCACGCTAATGCTGCACTTCTTGAGTTGCTAGGAGATGGGGTTCTGCGCCCACAGTTTCAACTCCCAAGCATGAACTGGAATTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009908 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

374

Amino Acids

41.51

Weight (kDa)

8.33

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61110
fragaria_vesca	FvH4_3g04630
malus_domestica	MD05G1321800.v1.1 MD05G1321900.v1.1 MD10G1299900.v1.1
prunus_persica	Prupe.4G040900_v2.0.a1 Prupe.4G040900_v2.0.a1
pyrus_communis	pycom05g29620 pycom10g25260
rosa_chinensis	RchiOBHm_Chr5g0007561
rosa_laevigata	RLG00000031468
rosa_multiflora	Rmu_ssc0000182.1_g000018
rosa_roxburghii	Rroxscaffold_1G00068840
rosa_rugosa	Rorug04G0428600 Rorug04G0428700
rosa_samantha	Rh5AG056300 Rh5BG053800 Rh5CG063600 Rh5DG052800
rosa_wichuraiana	Rw5G005390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	540
AccB1I	GGYRCC	1 cut(s)	1027
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	3 cut(s)	143, 256, 716
AclWI	GGATC	3 cut(s)	161, 476, 919
AcoI	YGGCCR	1 cut(s)	257
AcsI	RAATTY	2 cut(s)	13, 1114
AcuI	CTGAAG	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	1013
AfaI	GTAC	3 cut(s)	158, 466, 1024
AfiI	CCNNNNNNNGG	3 cut(s)	127, 386, 387
AgsI	TTSAA	2 cut(s)	874, 1094
AjiI	CACGTC	1 cut(s)	907
AjnI	CCWGG	1 cut(s)	781
AloI	GAACNNNNNNTCC	5 cut(s)	72, 104, 1059, 1091, 1100
AluBI	AGCT	5 cut(s)	43, 356, 488, 694, 744
AluI	AGCT	5 cut(s)	43, 356, 488, 694, 744
Alw21I	GWGCWC	1 cut(s)	11
AlwI	GGATC	3 cut(s)	161, 476, 919
Ama87I	CYCGRG	1 cut(s)	749
AoxI	GGCC	4 cut(s)	108, 257, 554, 594
ApeKI	GCWGC	9 cut(s)	40, 269, 670, 679, 694, 861, 926, 929, 1046
ApoI	RAATTY	2 cut(s)	13, 1114
AspLEI	GCGC	3 cut(s)	256, 836, 1083
AspS9I	GGNCC	3 cut(s)	88, 232, 554
AsuC2I	CCSGG	1 cut(s)	51
AsuHPI	GGTGA	2 cut(s)	56, 587
AvaI	CYCGRG	1 cut(s)	749
AvaII	GGWCC	2 cut(s)	88, 232
AxyI	CCTNAGG	1 cut(s)	506
BanI	GGYRCC	1 cut(s)	1027
BauI	CACGAG	2 cut(s)	413, 737
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	9 cut(s)	52, 281, 657, 666, 681, 873, 913, 916, 1033
BccI	CCATC	8 cut(s)	125, 143, 455, 508, 566, 691, 857, 1064
BceAI	ACGGC	2 cut(s)	877, 1041
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	1 cut(s)	783
BciVI	GTATCC	1 cut(s)	252
BclI	TGATCA	4 cut(s)	577, 811, 817, 823
BcnI	CCSGG	1 cut(s)	51
BfaI	CTAG	3 cut(s)	722, 1064, 1120
BfmI	CTRYAG	1 cut(s)	702
BfoI	RGCGCY	1 cut(s)	837
BfuI	GTATCC	1 cut(s)	252
BmcAI	AGTACT	1 cut(s)	466
Bme1390I	CCNGG	2 cut(s)	51, 783
Bme18I	GGWCC	2 cut(s)	88, 232
BmeT110I	CYCGRG	1 cut(s)	749
BmgBI	CACGTC	1 cut(s)	907
BmgT120I	GGNCC	3 cut(s)	88, 232, 554
BmiI	GGNNCC	3 cut(s)	56, 233, 1029
BmrFI	CCNGG	2 cut(s)	51, 783
BmrI	ACTGGG	1 cut(s)	306
BmuI	ACTGGG	1 cut(s)	306
BpuEI	CTTGAG	2 cut(s)	83, 1076
BpuMI	CCSGG	1 cut(s)	51
Bsa29I	ATCGAT	1 cut(s)	914
BsaBI	GATNNNNATC	3 cut(s)	576, 816, 822
BsaHI	GRCGYC	1 cut(s)	1013
BsaJI	CCNNGG	4 cut(s)	50, 170, 227, 597
BsaWI	WCCGGW	3 cut(s)	57, 127, 234
BsaXI	ACNNNNNCTCC	6 cut(s)	194, 224, 460, 490, 1059, 1089
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 386, 387
Bse1I	ACTGG	3 cut(s)	87, 301, 1115
Bse21I	CCTNAGG	1 cut(s)	506
Bse8I	GATNNNNATC	3 cut(s)	576, 816, 822
BseBI	CCWGG	1 cut(s)	783
BseCI	ATCGAT	1 cut(s)	914
BseDI	CCNNGG	4 cut(s)	50, 170, 227, 597
BseGI	GGATG	2 cut(s)	117, 500
BseJI	GATNNNNATC	3 cut(s)	576, 816, 822
BseLI	CCNNNNNNNGG	3 cut(s)	127, 386, 387
BseNI	ACTGG	3 cut(s)	87, 301, 1115
BseXI	GCAGC	9 cut(s)	52, 281, 657, 666, 681, 873, 913, 916, 1033
BsgI	GTGCAG	1 cut(s)	1032
Bsh1236I	CGCG	3 cut(s)	143, 256, 716
Bsh1285I	CGRYCG	1 cut(s)	132
BshFI	GGCC	4 cut(s)	110, 259, 556, 596
BshNI	GGYRCC	1 cut(s)	1027
BshVI	ATCGAT	1 cut(s)	914
BsiEI	CGRYCG	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	749
BsiSI	CCGG	4 cut(s)	50, 58, 128, 235
BslFI	GGGAC	4 cut(s)	245, 313, 403, 934
BslI	CCNNNNNNNGG	3 cut(s)	127, 386, 387
BsmFI	GGGAC	4 cut(s)	245, 313, 403, 934
BsnI	GGCC	4 cut(s)	110, 259, 556, 596
BsoBI	CYCGRG	1 cut(s)	749
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp1407I	TGTACA	1 cut(s)	156
Bsp143I	GATC	9 cut(s)	166, 481, 577, 772, 811, 817, 823, 911, 967
Bsp19I	CCATGG	1 cut(s)	170
BspANI	GGCC	4 cut(s)	110, 259, 556, 596
BspDI	ATCGAT	1 cut(s)	914
BspFNI	CGCG	3 cut(s)	143, 256, 716
BspHI	TCATGA	3 cut(s)	808, 814, 820
BspLI	GGNNCC	3 cut(s)	56, 233, 1029
BspPI	GGATC	3 cut(s)	161, 476, 919
BspT107I	GGYRCC	1 cut(s)	1027
BsrGI	TGTACA	1 cut(s)	156
BsrI	ACTGG	3 cut(s)	87, 301, 1115
BssECI	CCNNGG	4 cut(s)	50, 170, 227, 597
BssMI	GATC	9 cut(s)	166, 481, 577, 772, 811, 817, 823, 911, 967
BssNI	GRCGYC	1 cut(s)	1013
BssSI	CACGAG	2 cut(s)	413, 737
BssT1I	CCWWGG	2 cut(s)	170, 227
Bst2BI	CACGAG	2 cut(s)	413, 737
Bst2UI	CCWGG	1 cut(s)	783
Bst4CI	ACNGT	2 cut(s)	1032, 1089
BstACI	GRCGYC	1 cut(s)	1013
BstAUI	TGTACA	1 cut(s)	156
BstDEI	CTNAG	2 cut(s)	471, 506
BstDSI	CCRYGG	1 cut(s)	170
BstF5I	GGATG	2 cut(s)	117, 500
BstFNI	CGCG	3 cut(s)	143, 256, 716
BstH2I	RGCGCY	1 cut(s)	837
BstHHI	GCGC	3 cut(s)	256, 836, 1083
BstKTI	GATC	9 cut(s)	169, 484, 580, 775, 814, 820, 826, 914, 970
BstMBI	GATC	9 cut(s)	166, 481, 577, 772, 811, 817, 823, 911, 967
BstMCI	CGRYCG	1 cut(s)	132
BstMWI	GCNNNNNNNGC	6 cut(s)	40, 46, 140, 676, 679, 1046
BstNI	CCWGG	1 cut(s)	783
BstSCI	CCNGG	2 cut(s)	49, 781
BstSFI	CTRYAG	1 cut(s)	702
BstUI	CGCG	3 cut(s)	143, 256, 716
BstV1I	GCAGC	9 cut(s)	52, 281, 657, 666, 681, 873, 913, 916, 1033
Bsu15I	ATCGAT	1 cut(s)	914
Bsu36I	CCTNAGG	1 cut(s)	506
BsuI	GTATCC	1 cut(s)	252
BsuRI	GGCC	4 cut(s)	110, 259, 556, 596
BsuTUI	ATCGAT	1 cut(s)	914
BtgI	CCRYGG	1 cut(s)	170
BtgZI	GCGATG	1 cut(s)	124
BtrI	CACGTC	1 cut(s)	907
BtsCI	GGATG	2 cut(s)	117, 500
CciI	TCATGA	3 cut(s)	808, 814, 820
CfoI	GCGC	3 cut(s)	256, 836, 1083
Cfr13I	GGNCC	3 cut(s)	88, 232, 554
ClaI	ATCGAT	1 cut(s)	914
CseI	GACGC	1 cut(s)	1021
Csp6I	GTAC	3 cut(s)	157, 465, 1023
CviAII	CATG	7 cut(s)	171, 454, 809, 815, 821, 962, 1105
CviQI	GTAC	3 cut(s)	157, 465, 1023
DdeI	CTNAG	2 cut(s)	471, 506
DpnI	GATC	9 cut(s)	168, 483, 579, 774, 813, 819, 825, 913, 969
DpnII	GATC	9 cut(s)	166, 481, 577, 772, 811, 817, 823, 911, 967
EaeI	YGGCCR	1 cut(s)	257
Eco130I	CCWWGG	2 cut(s)	170, 227
Eco47I	GGWCC	2 cut(s)	88, 232
Eco57I	CTGAAG	1 cut(s)	261
Eco81I	CCTNAGG	1 cut(s)	506
Eco88I	CYCGRG	1 cut(s)	749
EcoO109I	RGGNCCY	1 cut(s)	554
EcoRI	GAATTC	1 cut(s)	1114
EcoRII	CCWGG	1 cut(s)	781
EcoT14I	CCWWGG	2 cut(s)	170, 227
ErhI	CCWWGG	2 cut(s)	170, 227
FaeI	CATG	7 cut(s)	174, 457, 812, 818, 824, 965, 1108
FaqI	GGGAC	4 cut(s)	245, 313, 403, 934
FatI	CATG	7 cut(s)	170, 453, 808, 814, 820, 961, 1104
FauI	CCCGC	3 cut(s)	45, 54, 129
FbaI	TGATCA	4 cut(s)	577, 811, 817, 823
FblI	GTMKAC	1 cut(s)	150
FokI	GGATG	2 cut(s)	104, 487
FspBI	CTAG	3 cut(s)	722, 1064, 1120
GlaI	GCGC	3 cut(s)	255, 835, 1082
HaeII	RGCGCY	1 cut(s)	837
HaeIII	GGCC	4 cut(s)	110, 259, 556, 596
HapII	CCGG	4 cut(s)	50, 58, 128, 235
HgaI	GACGC	1 cut(s)	1021
HhaI	GCGC	3 cut(s)	256, 836, 1083
Hin1I	GRCGYC	1 cut(s)	1013
Hin1II	CATG	7 cut(s)	174, 457, 812, 818, 824, 965, 1108
Hin6I	GCGC	3 cut(s)	254, 834, 1081
HinP1I	GCGC	3 cut(s)	254, 834, 1081
HincII	GTYRAC	2 cut(s)	151, 430
HindII	GTYRAC	2 cut(s)	151, 430
HinfI	GANTC	2 cut(s)	602, 1006
HpaII	CCGG	4 cut(s)	50, 58, 128, 235
HphI	GGTGA	2 cut(s)	56, 587
Hpy166II	GTNNAC	2 cut(s)	151, 430
Hpy188I	TCNGA	4 cut(s)	246, 329, 534, 1011
Hpy188III	TCNNGA	9 cut(s)	100, 479, 737, 749, 809, 815, 821, 948, 1055
Hpy8I	GTNNAC	2 cut(s)	151, 430
Hpy99I	CGWCG	3 cut(s)	73, 196, 908
HpyAV	CCTTC	2 cut(s)	283, 897
HpyCH4III	ACNGT	2 cut(s)	1032, 1089
HpyCH4IV	ACGT	3 cut(s)	194, 877, 906
HpyCH4V	TGCA	2 cut(s)	412, 1049
HpyF10VI	GCNNNNNNNGC	6 cut(s)	40, 46, 140, 676, 679, 1046
HpyF3I	CTNAG	2 cut(s)	471, 506
HpySE526I	ACGT	3 cut(s)	194, 877, 906
Hsp92I	GRCGYC	1 cut(s)	1013
Hsp92II	CATG	7 cut(s)	174, 457, 812, 818, 824, 965, 1108
HspAI	GCGC	3 cut(s)	254, 834, 1081
Ksp22I	TGATCA	4 cut(s)	577, 811, 817, 823
Kzo9I	GATC	9 cut(s)	166, 481, 577, 772, 811, 817, 823, 911, 967
LmnI	GCTCC	2 cut(s)	48, 202
Lsp1109I	GCAGC	9 cut(s)	52, 281, 657, 666, 681, 873, 913, 916, 1033
MaeI	CTAG	3 cut(s)	722, 1064, 1120
MaeII	ACGT	3 cut(s)	194, 877, 906
MalI	GATC	9 cut(s)	168, 483, 579, 774, 813, 819, 825, 913, 969
MboI	GATC	9 cut(s)	166, 481, 577, 772, 811, 817, 823, 911, 967
MboII	GAAGA	4 cut(s)	89, 578, 632, 875
MfeI	CAATTG	1 cut(s)	400
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	3 cut(s)	13, 400, 1114
MlyI	GAGTC	1 cut(s)	596
MmeI	TCCRAC	2 cut(s)	307, 512
MnlI	CCTC	7 cut(s)	107, 124, 139, 365, 486, 592, 745
MslI	CAYNNNNRTG	5 cut(s)	452, 807, 813, 819, 1041
MspA1I	CMGCKG	2 cut(s)	670, 679
MspI	CCGG	4 cut(s)	50, 58, 128, 235
MspR9I	CCNGG	2 cut(s)	51, 783
MunI	CAATTG	1 cut(s)	400
MvaI	CCWGG	1 cut(s)	783
MvnI	CGCG	3 cut(s)	143, 256, 716
MwoI	GCNNNNNNNGC	6 cut(s)	40, 46, 140, 676, 679, 1046
NciI	CCSGG	1 cut(s)	51
NcoI	CCATGG	1 cut(s)	170
NdeII	GATC	9 cut(s)	166, 481, 577, 772, 811, 817, 823, 911, 967
NlaIII	CATG	7 cut(s)	174, 457, 812, 818, 824, 965, 1108
NlaIV	GGNNCC	3 cut(s)	56, 233, 1029
NmeAIII	GCCGAG	1 cut(s)	622
PaeR7I	CTCGAG	1 cut(s)	749
PagI	TCATGA	3 cut(s)	808, 814, 820
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	1006
PleI	GAGTC	1 cut(s)	596
PpsI	GAGTC	1 cut(s)	596
PsiI	TTATAA	1 cut(s)	540
Psp6I	CCWGG	1 cut(s)	781
PspGI	CCWGG	1 cut(s)	781
PspN4I	GGNNCC	3 cut(s)	56, 233, 1029
PspPI	GGNCC	3 cut(s)	88, 232, 554
RsaI	GTAC	3 cut(s)	158, 466, 1024
RsaNI	GTAC	3 cut(s)	157, 465, 1023
RseI	CAYNNNNRTG	5 cut(s)	452, 807, 813, 819, 1041
SalI	GTCGAC	1 cut(s)	149
Sau3AI	GATC	9 cut(s)	166, 481, 577, 772, 811, 817, 823, 911, 967
Sau96I	GGNCC	3 cut(s)	88, 232, 554
ScaI	AGTACT	1 cut(s)	466
SchI	GAGTC	1 cut(s)	596
ScrFI	CCNGG	2 cut(s)	51, 783
SduI	GDGCHC	1 cut(s)	11
SfcI	CTRYAG	1 cut(s)	702
Sfr274I	CTCGAG	1 cut(s)	749
SinI	GGWCC	2 cut(s)	88, 232
SlaI	CTCGAG	1 cut(s)	749
SmiMI	CAYNNNNRTG	5 cut(s)	452, 807, 813, 819, 1041
SmlI	CTYRAG	3 cut(s)	98, 749, 1055
SmoI	CTYRAG	3 cut(s)	98, 749, 1055
Sse9I	AATT	3 cut(s)	13, 400, 1114
SspMI	CTAG	3 cut(s)	722, 1064, 1120
StyD4I	CCNGG	2 cut(s)	49, 781
StyI	CCWWGG	2 cut(s)	170, 227
TaaI	ACNGT	2 cut(s)	1032, 1089
TaiI	ACGT	3 cut(s)	197, 880, 909
TaqI	TCGA	4 cut(s)	150, 750, 914, 947
TasI	AATT	3 cut(s)	13, 400, 1114
TatI	WGTACW	2 cut(s)	156, 464
TauI	GCSGC	4 cut(s)	113, 259, 676, 679
TfiI	GAWTC	1 cut(s)	1006
TseI	GCWGC	9 cut(s)	40, 269, 670, 679, 694, 861, 926, 929, 1046
TspDTI	ATGAA	5 cut(s)	6, 933, 950, 993, 1121
TspGWI	ACGGA	2 cut(s)	86, 317
VpaK11BI	GGWCC	2 cut(s)	88, 232
XapI	RAATTY	2 cut(s)	13, 1114
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1107
XhoI	CTCGAG	1 cut(s)	749
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	3 cut(s)	722, 1064, 1120
ZrmI	AGTACT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.