Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010797

Physical Location & Seq

Genomic Coordinates Forward (+)

44932722 .. 44933541

Gene Structure 820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1321900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGATTCTTGATGATTGGGTTTTGTGCCGGGTTTATAAGAAAAACAATGCACAAAGGCCTACGATGTCTATGGAGGGTGATCATTTTCTTCACAAGGCTGAGGACTCTAATAGTTCTATGGAAGAGGGTATGTTTCTACACCCATCAATATGGCCAACTCAAAAACCATCGCCGTTCCCGCCACCACCATCATCAAAGCTGCCAACTACAAATTACACGGCGTTGCTTGAAAGCGATTATCACGAGAGCTTTTTCGAGGGCATACTATCGTCAAGCGATCATCAGCAAGGCTTTCATTCTCATCATCATGACCATGATCATGATCAGTTTGGCGCCATATCAACTTCAGGCTCAAAAACCAGCATACCCTTGAAACGTCAACTTTCATCGCCATTTTGGAACGACGTGGGATCGATAGGGTCTGCTGCTGCTACTACTACTTCATCGAGCAAAAGGTTTCATGCTGATCTCAACAGTGAAAACAACTCATTTGTTTCTATACTGAATCAGATGCCAGAGGGTACCGCGCCGTTGTACCCTAATCCTGCACTTCTTGGACCACTAGGAGATGGGGTTTTGCGCCCACAGTTTCAACTCCCAAGCATGAACTGGAATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009908 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

207

Amino Acids

22.86

Weight (kDa)

5.77

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61110
fragaria_vesca	FvH4_3g04630
malus_domestica	MD05G1321800.v1.1 MD05G1321900.v1.1 MD10G1299900.v1.1
prunus_persica	Prupe.4G040900_v2.0.a1 Prupe.4G040900_v2.0.a1
pyrus_communis	pycom05g29620 pycom10g25260
rosa_chinensis	RchiOBHm_Chr5g0007561
rosa_laevigata	RLG00000031468
rosa_multiflora	Rmu_ssc0000182.1_g000018
rosa_roxburghii	Rroxscaffold_1G00068840
rosa_rugosa	Rorug04G0428600 Rorug04G0428700
rosa_samantha	Rh5AG056300 Rh5BG053800 Rh5CG063600 Rh5DG052800
rosa_wichuraiana	Rw5G005390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	36
Acc65I	GGTACC	1 cut(s)	521
AccB1I	GGYRCC	2 cut(s)	332, 521
AccII	CGCG	1 cut(s)	527
AciI	CCGC	2 cut(s)	179, 525
AclWI	GGATC	1 cut(s)	418
AcoI	YGGCCR	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	613
AcuI	CTGAAG	1 cut(s)	330
AcyI	GRCGYC	1 cut(s)	333
AfaI	GTAC	2 cut(s)	523, 536
AgsI	TTSAA	3 cut(s)	230, 373, 593
AjiI	CACGTC	1 cut(s)	406
AluBI	AGCT	2 cut(s)	199, 249
AluI	AGCT	2 cut(s)	199, 249
AlwI	GGATC	1 cut(s)	418
AoxI	GGCC	2 cut(s)	56, 152
ApeKI	GCWGC	3 cut(s)	199, 425, 428
ApoI	RAATTY	1 cut(s)	613
Asp718I	GGTACC	1 cut(s)	521
AspLEI	GCGC	3 cut(s)	335, 529, 582
AspS9I	GGNCC	1 cut(s)	557
AsuC2I	CCSGG	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	557
BalI	TGGCCA	1 cut(s)	154
BanI	GGYRCC	2 cut(s)	332, 521
BauI	CACGAG	1 cut(s)	242
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	3 cut(s)	186, 412, 415
BccI	CCATC	4 cut(s)	151, 175, 196, 563
BceAI	ACGGC	3 cut(s)	157, 234, 514
BclI	TGATCA	3 cut(s)	79, 316, 322
BcnI	CCSGG	1 cut(s)	29
BfaI	CTAG	1 cut(s)	563
BfoI	RGCGCY	1 cut(s)	336
BisI	GCNGC	3 cut(s)	200, 426, 429
BlsI	GCNGC	3 cut(s)	201, 427, 430
Bme1390I	CCNGG	1 cut(s)	29
Bme18I	GGWCC	1 cut(s)	557
BmgBI	CACGTC	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	557
BmiI	GGNNCC	2 cut(s)	334, 523
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	501
Bpu10I	CCTNAGC	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	29
Bsa29I	ATCGAT	1 cut(s)	413
BsaBI	GATNNNNATC	1 cut(s)	321
BsaHI	GRCGYC	1 cut(s)	333
BsaXI	ACNNNNNCTCC	2 cut(s)	558, 588
Bse1I	ACTGG	1 cut(s)	614
Bse8I	GATNNNNATC	1 cut(s)	321
BseCI	ATCGAT	1 cut(s)	413
BseJI	GATNNNNATC	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	614
BseXI	GCAGC	3 cut(s)	186, 412, 415
BsgI	GTGCAG	1 cut(s)	531
Bsh1236I	CGCG	1 cut(s)	527
BshFI	GGCC	2 cut(s)	58, 154
BshNI	GGYRCC	2 cut(s)	332, 521
BshVI	ATCGAT	1 cut(s)	413
BsiSI	CCGG	1 cut(s)	28
BsnI	GGCC	2 cut(s)	58, 154
Bsp143I	GATC	6 cut(s)	79, 277, 316, 322, 410, 466
BspACI	CCGC	2 cut(s)	179, 525
BspANI	GGCC	2 cut(s)	58, 154
BspCNI	CTCAG	1 cut(s)	91
BspDI	ATCGAT	1 cut(s)	413
BspFNI	CGCG	1 cut(s)	527
BspHI	TCATGA	2 cut(s)	307, 319
BspLI	GGNNCC	2 cut(s)	334, 523
BspPI	GGATC	1 cut(s)	418
BspT107I	GGYRCC	2 cut(s)	332, 521
BsrI	ACTGG	1 cut(s)	614
BssMI	GATC	6 cut(s)	79, 277, 316, 322, 410, 466
BssNI	GRCGYC	1 cut(s)	333
BssSI	CACGAG	1 cut(s)	242
Bst2BI	CACGAG	1 cut(s)	242
Bst4CI	ACNGT	2 cut(s)	476, 588
Bst6I	CTCTTC	1 cut(s)	117
BstACI	GRCGYC	1 cut(s)	333
BstDEI	CTNAG	1 cut(s)	99
BstFNI	CGCG	1 cut(s)	527
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	3 cut(s)	335, 529, 582
BstKTI	GATC	6 cut(s)	82, 280, 319, 325, 413, 469
BstMBI	GATC	6 cut(s)	79, 277, 316, 322, 410, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	27
BstUI	CGCG	1 cut(s)	527
BstV1I	GCAGC	3 cut(s)	186, 412, 415
BstXI	CCANNNNNNTGG	1 cut(s)	150
Bsu15I	ATCGAT	1 cut(s)	413
BsuRI	GGCC	2 cut(s)	58, 154
BsuTUI	ATCGAT	1 cut(s)	413
BtgZI	GCGATG	2 cut(s)	153, 372
BtrI	CACGTC	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	481
CciI	TCATGA	2 cut(s)	307, 319
CfoI	GCGC	3 cut(s)	335, 529, 582
Cfr13I	GGNCC	1 cut(s)	557
ClaI	ATCGAT	1 cut(s)	413
Csp6I	GTAC	2 cut(s)	522, 535
CviAII	CATG	5 cut(s)	308, 314, 320, 461, 604
CviJI	RGCY	7 cut(s)	58, 98, 154, 199, 249, 291, 351
CviKI_1	RGCY	7 cut(s)	58, 98, 154, 199, 249, 291, 351
CviQI	GTAC	2 cut(s)	522, 535
DdeI	CTNAG	1 cut(s)	99
DinI	GGCGCC	1 cut(s)	334
DpnI	GATC	6 cut(s)	81, 279, 318, 324, 412, 468
DpnII	GATC	6 cut(s)	79, 277, 316, 322, 410, 466
EaeI	YGGCCR	1 cut(s)	152
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco147I	AGGCCT	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	557
Eco57I	CTGAAG	1 cut(s)	330
EcoRI	GAATTC	1 cut(s)	613
EgeI	GGCGCC	1 cut(s)	334
EheI	GGCGCC	1 cut(s)	334
FaeI	CATG	5 cut(s)	311, 317, 323, 464, 607
FatI	CATG	5 cut(s)	307, 313, 319, 460, 603
FauI	CCCGC	1 cut(s)	186
FbaI	TGATCA	3 cut(s)	79, 316, 322
Fnu4HI	GCNGC	3 cut(s)	200, 426, 429
Fsp4HI	GCNGC	3 cut(s)	200, 426, 429
FspBI	CTAG	1 cut(s)	563
GlaI	GCGC	3 cut(s)	334, 528, 581
GluI	GCNGC	3 cut(s)	200, 426, 429
HaeII	RGCGCY	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	58, 154
HapII	CCGG	1 cut(s)	28
HhaI	GCGC	3 cut(s)	335, 529, 582
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	5 cut(s)	311, 317, 323, 464, 607
Hin6I	GCGC	3 cut(s)	333, 527, 580
HinP1I	GCGC	3 cut(s)	333, 527, 580
HincII	GTYRAC	1 cut(s)	380
HindII	GTYRAC	1 cut(s)	380
HinfI	GANTC	3 cut(s)	4, 104, 505
HpaII	CCGG	1 cut(s)	28
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	380
Hpy188I	TCNGA	1 cut(s)	510
Hpy188III	TCNNGA	4 cut(s)	8, 242, 308, 320
Hpy8I	GTNNAC	1 cut(s)	380
Hpy99I	CGWCG	1 cut(s)	407
HpyCH4III	ACNGT	2 cut(s)	476, 588
HpyCH4IV	ACGT	2 cut(s)	376, 405
HpyCH4V	TGCA	2 cut(s)	50, 548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	2 cut(s)	376, 405
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	5 cut(s)	311, 317, 323, 464, 607
HspAI	GCGC	3 cut(s)	333, 527, 580
KasI	GGCGCC	1 cut(s)	332
KpnI	GGTACC	1 cut(s)	525
Ksp22I	TGATCA	3 cut(s)	79, 316, 322
Kzo9I	GATC	6 cut(s)	79, 277, 316, 322, 410, 466
LpnPI	CCDG	6 cut(s)	41, 333, 373, 528, 558, 595
Lsp1109I	GCAGC	3 cut(s)	186, 412, 415
LweI	GCATC	1 cut(s)	501
MaeI	CTAG	1 cut(s)	563
MaeII	ACGT	2 cut(s)	376, 405
MalI	GATC	6 cut(s)	81, 279, 318, 324, 412, 468
MboI	GATC	6 cut(s)	79, 277, 316, 322, 410, 466
MboII	GAAGA	2 cut(s)	80, 134
MlsI	TGGCCA	1 cut(s)	154
MluCI	AATT	2 cut(s)	211, 613
MluNI	TGGCCA	1 cut(s)	154
Mly113I	GGCGCC	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	5 cut(s)	67, 94, 118, 250, 511
Mox20I	TGGCCA	1 cut(s)	154
MscI	TGGCCA	1 cut(s)	154
MslI	CAYNNNNRTG	4 cut(s)	148, 306, 312, 318
Msp20I	TGGCCA	1 cut(s)	154
MspI	CCGG	1 cut(s)	28
MspR9I	CCNGG	1 cut(s)	29
MvnI	CGCG	1 cut(s)	527
MwoI	GCNNNNNNNGC	1 cut(s)	178
NarI	GGCGCC	1 cut(s)	333
NciI	CCSGG	1 cut(s)	29
NdeII	GATC	6 cut(s)	79, 277, 316, 322, 410, 466
NlaIII	CATG	5 cut(s)	311, 317, 323, 464, 607
NlaIV	GGNNCC	2 cut(s)	334, 523
PagI	TCATGA	2 cut(s)	307, 319
PceI	AGGCCT	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	4, 505
PkrI	GCNGC	3 cut(s)	201, 427, 430
PleI	GAGTC	1 cut(s)	98
PluTI	GGCGCC	1 cut(s)	336
PpsI	GAGTC	1 cut(s)	98
PsiI	TTATAA	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	334, 523
PspPI	GGNCC	1 cut(s)	557
RsaI	GTAC	2 cut(s)	523, 536
RsaNI	GTAC	2 cut(s)	522, 535
RseI	CAYNNNNRTG	4 cut(s)	148, 306, 312, 318
SatI	GCNGC	3 cut(s)	200, 426, 429
Sau3AI	GATC	6 cut(s)	79, 277, 316, 322, 410, 466
Sau96I	GGNCC	1 cut(s)	557
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	29
SetI	ASST	5 cut(s)	201, 251, 379, 408, 458
SfaNI	GCATC	1 cut(s)	501
SfoI	GGCGCC	1 cut(s)	334
SinI	GGWCC	1 cut(s)	557
SmiMI	CAYNNNNRTG	4 cut(s)	148, 306, 312, 318
Sse9I	AATT	2 cut(s)	211, 613
SseBI	AGGCCT	1 cut(s)	58
SsiI	CCGC	2 cut(s)	179, 525
SspDI	GGCGCC	1 cut(s)	332
SspMI	CTAG	1 cut(s)	563
StuI	AGGCCT	1 cut(s)	58
StyD4I	CCNGG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	476, 588
TaiI	ACGT	2 cut(s)	379, 408
TaqI	TCGA	3 cut(s)	255, 413, 446
TasI	AATT	2 cut(s)	211, 613
TfiI	GAWTC	2 cut(s)	4, 505
TscAI	CASTG	1 cut(s)	481
TseI	GCWGC	3 cut(s)	199, 425, 428
TspDTI	ATGAA	6 cut(s)	284, 375, 432, 449, 606, 620
TspRI	CASTG	1 cut(s)	481
VpaK11BI	GGWCC	1 cut(s)	557
XapI	RAATTY	1 cut(s)	613
XcmI	CCANNNNNNNNNTGG	1 cut(s)	606
XspI	CTAG	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.