Rorug04G0428600
NAC Family

NAC transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0010797
Physical Location & Seq
Reverse (-)
58640603 .. 58641910
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0428600.1

Sequence Viewer

Length: 1026 bp
ATGGAGATCCCACAGTTTCTGGAGTACCAAGAACATGAAGCTGTTGACAACTCTGCACAGAAGGTACCAATTCTGCCTTCTGATGCAATCAAAGAAAAACAAGCAGGGCCACCTCATGAAGCTTTGTTCCTTATCTTAACTTACCTTCCTCTGTTTGAGCTTCTTGCCATGAATCAAGTTTGCACTTCACTGAGAGATGCAGTAAACAAGGATGTGCTCTCATGGTTGAACATCATCGTTGATAAGGCTTTGAGCTTGAAATTGTCTGATGAGATCTTGATGAAAATTACATCGAAGGCAAATGGTAGGTTGAGAACTTTGGCTCTCATGAACTGTGCAAAGATTACAGATAACGGGCTTCAACAGGTTGTGGAGCAGAATCCTCTGATCAGCAAGCTCTATCTACCAGCTTGCACTGGCTTAACACCCGAAGGGGTCATACGAGCTGTGAAGACATTATCTGACCATGGTCACTGCCTAAAGTCCATAATGATAAATGGCATCTACAACATAAACAAACAGCACCTTGAAACACTTGAGTCTTATCTTCATGAAATGAATCTTGACGCAAAGAAAGAGCAGCCGGGATCATGGCCTCTCCTATTACTTGAGTACATGGACTCGCCAACATTCAGACATGACAAAGGTCACACCATAATTGACCTTGAAGTTTGCCCAAAATGCGACGAGGTGAGGATGGTTTTCGACTGTCCAAGGTGGGCGTGCAAGAGAATGATAGAAAGGTCAATGACTCGGTGTAGGGGATGCAGGTTTTGCATTCTGAGGTGCCAAGAGTGTGGTGGATGCGTCGATTCTCAAGAAATTGAAGAGGCTGTTTGTGCTCATATCTTGTGCTCAGATTGCTGGCTCCACCTTCCCAAATGTAACTTCTGCAACAAGCCATATTGCAAGCAACACGTTGATAACAAGTGCTGCACTTCAGGATCCACAGGTTTTGTCTGTGAGGTTTGTTATGCAAAGTACATTGTAAACTTGCCCAGTATTGTTGAATATGTTGATTTCTGA

Protein Analysis

341

Amino Acids

38.66

Weight (kDa)

6.01

Isoelectric Point (pI)

49.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 38 - 75 5.6e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010797)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61110
fragaria_vesca FvH4_3g04630
malus_domestica MD05G1321800.v1.1 MD05G1321900.v1.1 MD10G1299900.v1.1
prunus_persica Prupe.4G040900_v2.0.a1 Prupe.4G040900_v2.0.a1
pyrus_communis pycom05g29620 pycom10g25260
rosa_chinensis RchiOBHm_Chr5g0007561
rosa_laevigata RLG00000031468
rosa_multiflora Rmu_ssc0000182.1_g000018
rosa_roxburghii Rroxscaffold_1G00068840
rosa_rugosa Rorug04G0428600 Rorug04G0428700
rosa_samantha Rh5AG056300 Rh5BG053800 Rh5CG063600 Rh5DG052800
rosa_wichuraiana Rw5G005390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 759
Acc65I GGTACC 1 cut(s) 64
AccB1I GGYRCC 2 cut(s) 64, 786
AclWI GGATC 3 cut(s) 595, 939, 952
AcuI CTGAAG 1 cut(s) 924
AfaI GTAC 4 cut(s) 26, 66, 614, 983
AflIII ACRYGT 1 cut(s) 916
AgsI TTSAA 7 cut(s) 229, 259, 362, 530, 668, 827, 1010
AjuI GAANNNNNNNTTGG 4 cut(s) 61, 93, 872, 904
AluBI AGCT 7 cut(s) 41, 122, 160, 255, 397, 410, 446
AluI AGCT 7 cut(s) 41, 122, 160, 255, 397, 410, 446
Alw21I GWGCWC 3 cut(s) 219, 844, 857
AlwI GGATC 3 cut(s) 595, 939, 952
AlwNI CAGNNNCTG 1 cut(s) 19
AoxI GGCC 2 cut(s) 107, 593
ApeKI GCWGC 2 cut(s) 580, 933
Asp718I GGTACC 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 107
AsuC2I CCSGG 1 cut(s) 585
AsuHPI GGTGA 1 cut(s) 703
BamHI GGATCC 1 cut(s) 944
BanI GGYRCC 2 cut(s) 64, 786
BarI GAAGNNNNNNTAC 2 cut(s) 423, 455
BbsI GAAGAC 1 cut(s) 458
Bbv12I GWGCWC 3 cut(s) 219, 844, 857
BbvI GCAGC 2 cut(s) 592, 920
BccI CCATC 1 cut(s) 691
BclI TGATCA 1 cut(s) 387
BcnI CCSGG 1 cut(s) 585
BfuAI ACCTGC 1 cut(s) 759
BglII AGATCT 1 cut(s) 273
BisI GCNGC 2 cut(s) 581, 934
BlsI GCNGC 2 cut(s) 582, 935
Bme1390I CCNGG 1 cut(s) 585
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 4 cut(s) 66, 788, 869, 946
BmrFI CCNGG 1 cut(s) 585
BmrI ACTGGG 1 cut(s) 993
BmsI GCATC 5 cut(s) 73, 187, 510, 755, 794
BmuI ACTGGG 1 cut(s) 993
BoxI GACNNNNGTC 2 cut(s) 468, 645
BpiI GAAGAC 1 cut(s) 458
BpmI CTGGAG 1 cut(s) 41
BpuEI CTTGAG 3 cut(s) 557, 629, 801
BpuMI CCSGG 1 cut(s) 585
BsaJI CCNNGG 2 cut(s) 466, 713
Bse1I ACTGG 2 cut(s) 421, 999
BseDI CCNNGG 2 cut(s) 466, 713
BseGI GGATG 4 cut(s) 217, 702, 770, 809
BseMII CTCAG 3 cut(s) 182, 773, 870
BseNI ACTGG 2 cut(s) 421, 999
BseXI GCAGC 2 cut(s) 592, 920
BsgI GTGCAG 2 cut(s) 39, 919
BshFI GGCC 2 cut(s) 109, 595
BshNI GGYRCC 2 cut(s) 64, 786
BsiHKAI GWGCWC 3 cut(s) 219, 844, 857
BsiSI CCGG 1 cut(s) 584
BsmI GAATGC 1 cut(s) 777
BsnI GGCC 2 cut(s) 109, 595
Bsp1286I GDGCHC 3 cut(s) 219, 844, 857
Bsp143I GATC 5 cut(s) 6, 273, 387, 587, 944
Bsp19I CCATGG 1 cut(s) 466
BspANI GGCC 2 cut(s) 109, 595
BspCNI CTCAG 3 cut(s) 183, 774, 869
BspHI TCATGA 3 cut(s) 115, 327, 550
BspLI GGNNCC 4 cut(s) 66, 788, 869, 946
BspMI ACCTGC 1 cut(s) 759
BspPI GGATC 3 cut(s) 595, 939, 952
BspT107I GGYRCC 2 cut(s) 64, 786
BsrI ACTGG 2 cut(s) 421, 999
BssECI CCNNGG 2 cut(s) 466, 713
BssMI GATC 5 cut(s) 6, 273, 387, 587, 944
BssT1I CCWWGG 2 cut(s) 466, 713
Bst4CI ACNGT 3 cut(s) 15, 335, 710
Bst6I CTCTTC 1 cut(s) 822
BstAPI GCANNNNNTGC 1 cut(s) 774
BstC8I GCNNGC 5 cut(s) 395, 412, 724, 866, 911
BstDEI CTNAG 3 cut(s) 191, 782, 856
BstDSI CCRYGG 1 cut(s) 466
BstF5I GGATG 4 cut(s) 217, 702, 770, 809
BstKTI GATC 5 cut(s) 9, 276, 390, 590, 947
BstMBI GATC 5 cut(s) 6, 273, 387, 587, 944
BstMWI GCNNNNNNNGC 4 cut(s) 681, 774, 839, 861
BstPAI GACNNNNGTC 2 cut(s) 468, 645
BstSCI CCNGG 1 cut(s) 583
BstV1I GCAGC 2 cut(s) 592, 920
BstV2I GAAGAC 1 cut(s) 458
BstX2I RGATCY 3 cut(s) 6, 273, 944
BstXI CCANNNNNNTGG 1 cut(s) 797
BstYI RGATCY 3 cut(s) 6, 273, 944
BsuRI GGCC 2 cut(s) 109, 595
BtgI CCRYGG 1 cut(s) 466
BtsCI GGATG 4 cut(s) 217, 702, 770, 809
BtsI GCAGTG 1 cut(s) 472
BtsIMutI CAGTG 3 cut(s) 188, 414, 472
BveI ACCTGC 1 cut(s) 759
Cac8I GCNNGC 5 cut(s) 395, 412, 724, 866, 911
CaiI CAGNNNCTG 1 cut(s) 19
CciI TCATGA 3 cut(s) 115, 327, 550
Cfr13I GGNCC 1 cut(s) 107
CseI GACGC 2 cut(s) 575, 796
Csp6I GTAC 4 cut(s) 25, 65, 613, 982
CspCI CAANNNNNGTGG 2 cut(s) 937, 972
CviQI GTAC 4 cut(s) 25, 65, 613, 982
DdeI CTNAG 3 cut(s) 191, 782, 856
DpnI GATC 5 cut(s) 8, 275, 389, 589, 946
DpnII GATC 5 cut(s) 6, 273, 387, 587, 944
Eam1104I CTCTTC 1 cut(s) 822
EarI CTCTTC 1 cut(s) 822
Eco130I CCWWGG 2 cut(s) 466, 713
Eco57I CTGAAG 1 cut(s) 924
EcoT14I CCWWGG 2 cut(s) 466, 713
ErhI CCWWGG 2 cut(s) 466, 713
FbaI TGATCA 1 cut(s) 387
Fnu4HI GCNGC 2 cut(s) 581, 934
FokI GGATG 4 cut(s) 224, 709, 777, 816
Fsp4HI GCNGC 2 cut(s) 581, 934
GluI GCNGC 2 cut(s) 581, 934
GsuI CTGGAG 1 cut(s) 41
HaeIII GGCC 2 cut(s) 109, 595
HapII CCGG 1 cut(s) 584
HgaI GACGC 2 cut(s) 575, 796
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 7 cut(s) 172, 379, 539, 559, 620, 751, 812
HpaII CCGG 1 cut(s) 584
HphI GGTGA 1 cut(s) 703
Hpy166II GTNNAC 3 cut(s) 46, 205, 991
Hpy188I TCNGA 8 cut(s) 82, 268, 387, 463, 635, 783, 859, 1025
Hpy188III TCNNGA 8 cut(s) 20, 116, 277, 328, 551, 563, 818, 942
Hpy8I GTNNAC 3 cut(s) 46, 205, 991
Hpy99I CGWCG 2 cut(s) 689, 812
HpyAV CCTTC 6 cut(s) 55, 87, 155, 289, 425, 884
HpyCH4III ACNGT 3 cut(s) 15, 335, 710
HpyCH4IV ACGT 1 cut(s) 918
HpyF10VI GCNNNNNNNGC 4 cut(s) 681, 774, 839, 861
HpyF3I CTNAG 3 cut(s) 191, 782, 856
HpySE526I ACGT 1 cut(s) 918
KpnI GGTACC 1 cut(s) 68
Ksp22I TGATCA 1 cut(s) 387
Kzo9I GATC 5 cut(s) 6, 273, 387, 587, 944
LmnI GCTCC 2 cut(s) 373, 873
Lsp1109I GCAGC 2 cut(s) 592, 920
LweI GCATC 5 cut(s) 73, 187, 510, 755, 794
MaeII ACGT 1 cut(s) 918
MaeIII GTNAC 3 cut(s) 470, 647, 884
MalI GATC 5 cut(s) 8, 275, 389, 589, 946
MboI GATC 5 cut(s) 6, 273, 387, 587, 944
MboII GAAGA 3 cut(s) 463, 539, 839
MflI RGATCY 3 cut(s) 6, 273, 944
MhlI GDGCHC 3 cut(s) 219, 844, 857
MluCI AATT 5 cut(s) 69, 260, 285, 657, 822
MlyI GAGTC 3 cut(s) 548, 614, 745
MnlI CCTC 9 cut(s) 123, 159, 393, 606, 682, 687, 777, 823, 958
MseI TTAA 2 cut(s) 137, 422
MspI CCGG 1 cut(s) 584
MspR9I CCNGG 1 cut(s) 585
Mva1269I GAATGC 1 cut(s) 777
MwoI GCNNNNNNNGC 4 cut(s) 681, 774, 839, 861
NciI CCSGG 1 cut(s) 585
NcoI CCATGG 1 cut(s) 466
NdeII GATC 5 cut(s) 6, 273, 387, 587, 944
NlaIV GGNNCC 4 cut(s) 66, 788, 869, 946
NmuCI GTSAC 2 cut(s) 470, 647
PagI TCATGA 3 cut(s) 115, 327, 550
PctI GAATGC 1 cut(s) 777
PfeI GAWTC 4 cut(s) 172, 379, 559, 812
PkrI GCNGC 2 cut(s) 582, 935
PleI GAGTC 3 cut(s) 547, 614, 745
PpsI GAGTC 3 cut(s) 547, 614, 745
PshAI GACNNNNGTC 2 cut(s) 468, 645
PspN4I GGNNCC 4 cut(s) 66, 788, 869, 946
PspPI GGNCC 1 cut(s) 107
PstNI CAGNNNCTG 1 cut(s) 19
PsuI RGATCY 3 cut(s) 6, 273, 944
RsaI GTAC 4 cut(s) 26, 66, 614, 983
RsaNI GTAC 4 cut(s) 25, 65, 613, 982
SaqAI TTAA 2 cut(s) 137, 422
SatI GCNGC 2 cut(s) 581, 934
Sau3AI GATC 5 cut(s) 6, 273, 387, 587, 944
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 3 cut(s) 548, 614, 745
ScrFI CCNGG 1 cut(s) 585
SduI GDGCHC 3 cut(s) 219, 844, 857
SfaNI GCATC 5 cut(s) 73, 187, 510, 755, 794
SmlI CTYRAG 3 cut(s) 536, 608, 816
SmoI CTYRAG 3 cut(s) 536, 608, 816
Sse9I AATT 5 cut(s) 69, 260, 285, 657, 822
StyD4I CCNGG 1 cut(s) 583
StyI CCWWGG 2 cut(s) 466, 713
TaaI ACNGT 3 cut(s) 15, 335, 710
TaiI ACGT 1 cut(s) 921
TaqI TCGA 3 cut(s) 293, 705, 810
TasI AATT 5 cut(s) 69, 260, 285, 657, 822
TatI WGTACW 2 cut(s) 612, 981
TfiI GAWTC 4 cut(s) 172, 379, 559, 812
Tru1I TTAA 2 cut(s) 137, 422
Tru9I TTAA 2 cut(s) 137, 422
TscAI CASTG 3 cut(s) 195, 421, 479
TseFI GTSAC 2 cut(s) 470, 647
TseI GCWGC 2 cut(s) 580, 933
Tsp45I GTSAC 2 cut(s) 470, 647
TspDTI ATGAA 8 cut(s) 51, 132, 185, 296, 344, 539, 567, 572
TspRI CASTG 3 cut(s) 195, 421, 479
XcmI CCANNNNNNNNNTGG 1 cut(s) 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.