Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010797

Physical Location & Seq

Genomic Coordinates Forward (+)

22516602 .. 22518292

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G61110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAAAACATGGGGGATTCGAGCATAGGGCCGGGCCATCCGCATCTCCCTCCCGGGTTTCGGTTTCACCCGACTGATGAGGAACTAGTAGTTCATTACCTCAAGAAGAAAGCAGATTCTGTTCCACTTCCAGTCTCAATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATCGGAAGTATCCAAATGGGGTTAGGCCAAACCGGGCAGCAACTTCCGGTTATTGGAAAGCAACGGGAACCGATAAACCGATATTTACGTGCAATAGTCACAAGGTTGGTGTCAAGAAAGCGCTTGTTTTTTACGGTGGAAAGCCTCCTAAAGGGATAAAAACAGATTGGATCATGCATGAATATCGCCTCACTGATGGTAACCTTAGCACTGCGGCTAAGCCGCCTGACTTAACCACGACAAGGAAAAACTCACTACGGCTAGACGATTGGGTTCTATGTAGGATCTATAAGAAGAATAGTTCACAAAGACCAACAATGGAGAGAGTATTACTTAGAGAGGATCTAATGGAAGGCATGCTCTCAAAATCATCTGCTAATTCTTCTTCTACATCAGTACTAGACAACAACGACAACAATAATAACAATAACGAAGAACACTTTTTCGACGGTATGGTCGTTTCTTCAGACAAACGTTCCTTGTGTGGTCAATACCGAATGGGCCACGAGGCCTCAGGATCATCTTCATTCGGATCTTTCTTATCGAGCAAGAGGTTTCATCATACAGGTGATCTCAACAATGATAACTACAATGTCTCTTTTGTTTCGATGCTTAGTGAGATTCCTCAGAGTTCGGGGTTTCATGCAAATGGTGTTATGGATACGACGTCGTCTCTAGCTGATCATGGGGTTTTAAGACAGGCGTTTCAGCTTCCTAACATGAACTGGCACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009753 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009908 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045995 GO:0048229 GO:0048316 GO:0048317 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048481 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0090567 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

323

Amino Acids

36.31

Weight (kDa)

7.79

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	17 - 142	1.8e-50	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61110
fragaria_vesca	FvH4_3g04630
malus_domestica	MD05G1321800.v1.1 MD05G1321900.v1.1 MD10G1299900.v1.1
prunus_persica	Prupe.4G040900_v2.0.a1 Prupe.4G040900_v2.0.a1
pyrus_communis	pycom05g29620 pycom10g25260
rosa_chinensis	RchiOBHm_Chr5g0007561
rosa_laevigata	RLG00000031468
rosa_multiflora	Rmu_ssc0000182.1_g000018
rosa_roxburghii	Rroxscaffold_1G00068840
rosa_rugosa	Rorug04G0428600 Rorug04G0428700
rosa_samantha	Rh5AG056300 Rh5BG053800 Rh5CG063600 Rh5DG052800
rosa_wichuraiana	Rw5G005390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	689
AatII	GACGTC	1 cut(s)	905
AciI	CCGC	3 cut(s)	41, 449, 458
AclI	AACGTT	1 cut(s)	709
AclWI	GGATC	7 cut(s)	164, 243, 413, 527, 585, 760, 775
AcuI	CTGAAG	1 cut(s)	684
AcyI	GRCGYC	1 cut(s)	902
AfaI	GTAC	2 cut(s)	218, 633
AfeI	AGCGCT	1 cut(s)	357
AfiI	CCNNNNNNNGG	4 cut(s)	60, 288, 386, 477
AhlI	ACTAGT	1 cut(s)	85
AluBI	AGCT	3 cut(s)	181, 914, 946
AluI	AGCT	3 cut(s)	181, 914, 946
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	3 cut(s)	139, 835, 912
AlwI	GGATC	7 cut(s)	164, 243, 413, 527, 585, 760, 775
AlwNI	CAGNNNCTG	1 cut(s)	119
Ama87I	CYCGRG	2 cut(s)	53, 231
Aor51HI	AGCGCT	1 cut(s)	357
AoxI	GGCC	5 cut(s)	29, 34, 260, 736, 744
ApeKI	GCWGC	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	3 cut(s)	29, 34, 736
AsuC2I	CCSGG	4 cut(s)	33, 54, 55, 269
AsuHPI	GGTGA	2 cut(s)	59, 815
AvaI	CYCGRG	2 cut(s)	53, 231
AxyI	CCTNAGG	1 cut(s)	748
BauI	CACGAG	2 cut(s)	209, 740
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	284
BccI	CCATC	2 cut(s)	45, 425
BceAI	ACGGC	1 cut(s)	509
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciVI	GTATCC	2 cut(s)	255, 889
BclI	TGATCA	1 cut(s)	916
BcnI	CCSGG	4 cut(s)	33, 54, 55, 269
BcoDI	GTCTC	3 cut(s)	139, 835, 912
BcuI	ACTAGT	1 cut(s)	85
BfaI	CTAG	4 cut(s)	86, 497, 635, 911
BfoI	RGCGCY	1 cut(s)	359
BfuI	GTATCC	2 cut(s)	255, 889
BisI	GCNGC	3 cut(s)	273, 450, 458
BlpI	GCTNAGC	1 cut(s)	453
BlsI	GCNGC	3 cut(s)	274, 451, 459
BmcAI	AGTACT	1 cut(s)	633
Bme1390I	CCNGG	4 cut(s)	33, 54, 55, 269
BmeT110I	CYCGRG	2 cut(s)	53, 231
BmgT120I	GGNCC	3 cut(s)	29, 34, 736
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	4 cut(s)	33, 54, 55, 269
BmsI	GCATC	2 cut(s)	52, 834
Bpu10I	CCTNAGC	1 cut(s)	440
Bpu1102I	GCTNAGC	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	86
BpuMI	CCSGG	4 cut(s)	33, 54, 55, 269
BsaAI	YACGTR	1 cut(s)	324
BsaHI	GRCGYC	1 cut(s)	902
BsaJI	CCNNGG	3 cut(s)	53, 173, 230
BsaWI	WCCGGW	1 cut(s)	281
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 288, 386, 477
Bse1I	ACTGG	2 cut(s)	131, 965
Bse21I	CCTNAGG	1 cut(s)	748
BseDI	CCNNGG	3 cut(s)	53, 173, 230
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	4 cut(s)	60, 288, 386, 477
BseMII	CTCAG	2 cut(s)	762, 875
BseNI	ACTGG	2 cut(s)	131, 965
BseXI	GCAGC	1 cut(s)	284
BshFI	GGCC	5 cut(s)	31, 36, 262, 738, 746
BsiHKAI	GWGCWC	1 cut(s)	210
BsiHKCI	CYCGRG	2 cut(s)	53, 231
BsiSI	CCGG	4 cut(s)	32, 54, 268, 282
BslI	CCNNNNNNNGG	4 cut(s)	60, 288, 386, 477
BsmAI	GTCTC	3 cut(s)	139, 835, 912
BsmBI	CGTCTC	1 cut(s)	912
BsnI	GGCC	5 cut(s)	31, 36, 262, 738, 746
BsoBI	CYCGRG	2 cut(s)	53, 231
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp1720I	GCTNAGC	1 cut(s)	453
BspACI	CCGC	3 cut(s)	41, 449, 458
BspANI	GGCC	5 cut(s)	31, 36, 262, 738, 746
BspCNI	CTCAG	2 cut(s)	761, 874
BspLI	GGNNCC	1 cut(s)	304
BspPI	GGATC	7 cut(s)	164, 243, 413, 527, 585, 760, 775
BsrI	ACTGG	2 cut(s)	131, 965
BssECI	CCNNGG	3 cut(s)	53, 173, 230
BssNI	GRCGYC	1 cut(s)	902
BssSI	CACGAG	2 cut(s)	209, 740
BssT1I	CCWWGG	1 cut(s)	173
Bst2BI	CACGAG	2 cut(s)	209, 740
Bst4CI	ACNGT	2 cut(s)	371, 686
BstACI	GRCGYC	1 cut(s)	902
BstBAI	YACGTR	1 cut(s)	324
BstC8I	GCNNGC	1 cut(s)	593
BstDEI	CTNAG	6 cut(s)	440, 453, 569, 748, 848, 861
BstEII	GGTNACC	1 cut(s)	434
BstENI	CCTNNNNNAGG	1 cut(s)	384
BstF5I	GGATG	1 cut(s)	37
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	358
BstMAI	GTCTC	3 cut(s)	139, 835, 912
BstNSI	RCATGY	1 cut(s)	595
BstPI	GGTNACC	1 cut(s)	434
BstSCI	CCNGG	4 cut(s)	31, 52, 53, 267
BstV1I	GCAGC	1 cut(s)	284
BstX2I	RGATCY	3 cut(s)	519, 577, 767
BstYI	RGATCY	3 cut(s)	519, 577, 767
Bsu36I	CCTNAGG	1 cut(s)	748
BsuI	GTATCC	2 cut(s)	255, 889
BsuRI	GGCC	5 cut(s)	31, 36, 262, 738, 746
BtgZI	GCGATG	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	37
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	2 cut(s)	426, 444
Cac8I	GCNNGC	1 cut(s)	593
CaiI	CAGNNNCTG	1 cut(s)	119
CfoI	GCGC	1 cut(s)	358
Cfr13I	GGNCC	3 cut(s)	29, 34, 736
Cfr9I	CCCGGG	1 cut(s)	53
Csp6I	GTAC	2 cut(s)	217, 632
CviAII	CATG	7 cut(s)	10, 409, 413, 592, 878, 920, 955
CviQI	GTAC	2 cut(s)	217, 632
DdeI	CTNAG	6 cut(s)	440, 453, 569, 748, 848, 861
DrdI	GACNNNNNNGTC	1 cut(s)	689
DseDI	GACNNNNNNGTC	1 cut(s)	689
Eco130I	CCWWGG	1 cut(s)	173
Eco147I	AGGCCT	1 cut(s)	746
Eco47III	AGCGCT	1 cut(s)	357
Eco57I	CTGAAG	1 cut(s)	684
Eco81I	CCTNAGG	1 cut(s)	748
Eco88I	CYCGRG	2 cut(s)	53, 231
Eco91I	GGTNACC	1 cut(s)	434
EcoNI	CCTNNNNNAGG	1 cut(s)	384
EcoO65I	GGTNACC	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	173
EcoT22I	ATGCAT	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	173
Esp3I	CGTCTC	1 cut(s)	912
FaeI	CATG	7 cut(s)	13, 412, 416, 595, 881, 923, 958
FatI	CATG	7 cut(s)	9, 408, 412, 591, 877, 919, 954
FbaI	TGATCA	1 cut(s)	916
Fnu4HI	GCNGC	3 cut(s)	273, 450, 458
FokI	GGATG	1 cut(s)	24
Fsp4HI	GCNGC	3 cut(s)	273, 450, 458
FspBI	CTAG	4 cut(s)	86, 497, 635, 911
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	3 cut(s)	273, 450, 458
HaeII	RGCGCY	1 cut(s)	359
HaeIII	GGCC	5 cut(s)	31, 36, 262, 738, 746
HapII	CCGG	4 cut(s)	32, 54, 268, 282
HhaI	GCGC	1 cut(s)	358
Hin1I	GRCGYC	1 cut(s)	902
Hin1II	CATG	7 cut(s)	13, 412, 416, 595, 881, 923, 958
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HinfI	GANTC	3 cut(s)	17, 116, 856
HpaII	CCGG	4 cut(s)	32, 54, 268, 282
HphI	GGTGA	2 cut(s)	59, 815
Hpy166II	GTNNAC	1 cut(s)	539
Hpy188I	TCNGA	4 cut(s)	240, 703, 767, 864
Hpy188III	TCNNGA	4 cut(s)	103, 233, 349, 750
Hpy8I	GTNNAC	1 cut(s)	539
Hpy99I	CGWCG	3 cut(s)	686, 904, 907
HpyAV	CCTTC	1 cut(s)	581
HpyCH4III	ACNGT	2 cut(s)	371, 686
HpyCH4IV	ACGT	3 cut(s)	323, 709, 902
HpyCH4V	TGCA	3 cut(s)	327, 412, 881
HpyF3I	CTNAG	6 cut(s)	440, 453, 569, 748, 848, 861
HpySE526I	ACGT	3 cut(s)	323, 709, 902
Hsp92I	GRCGYC	1 cut(s)	902
Hsp92II	CATG	7 cut(s)	13, 412, 416, 595, 881, 923, 958
HspAI	GCGC	1 cut(s)	356
Ksp22I	TGATCA	1 cut(s)	916
LmnI	GCTCC	1 cut(s)	178
Lsp1109I	GCAGC	1 cut(s)	284
LweI	GCATC	2 cut(s)	52, 834
MaeI	CTAG	4 cut(s)	86, 497, 635, 911
MaeII	ACGT	3 cut(s)	323, 709, 902
MaeIII	GTNAC	2 cut(s)	332, 434
MboII	GAAGA	7 cut(s)	118, 541, 609, 612, 680, 690, 750
MflI	RGATCY	3 cut(s)	519, 577, 767
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	1 cut(s)	613
Mph1103I	ATGCAT	1 cut(s)	414
MseI	TTAA	2 cut(s)	467, 929
MslI	CAYNNNNRTG	2 cut(s)	801, 882
MspI	CCGG	4 cut(s)	32, 54, 268, 282
MspR9I	CCNGG	4 cut(s)	33, 54, 55, 269
NciI	CCSGG	4 cut(s)	33, 54, 55, 269
NlaIII	CATG	7 cut(s)	13, 412, 416, 595, 881, 923, 958
NlaIV	GGNNCC	1 cut(s)	304
NmuCI	GTSAC	1 cut(s)	332
NsiI	ATGCAT	1 cut(s)	414
NspI	RCATGY	1 cut(s)	595
PaeI	GCATGC	1 cut(s)	595
PceI	AGGCCT	1 cut(s)	746
PcsI	WCGNNNNNNNCGW	1 cut(s)	690
PfeI	GAWTC	3 cut(s)	17, 116, 856
PflFI	GACNNNGTC	1 cut(s)	904
PkrI	GCNGC	3 cut(s)	274, 451, 459
Ppu21I	YACGTR	1 cut(s)	324
Psp1406I	AACGTT	1 cut(s)	709
PspEI	GGTNACC	1 cut(s)	434
PspN4I	GGNNCC	1 cut(s)	304
PspPI	GGNCC	3 cut(s)	29, 34, 736
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	3 cut(s)	519, 577, 767
PsyI	GACNNNGTC	1 cut(s)	904
RsaI	GTAC	2 cut(s)	218, 633
RsaNI	GTAC	2 cut(s)	217, 632
RseI	CAYNNNNRTG	2 cut(s)	801, 882
SaqAI	TTAA	2 cut(s)	467, 929
SatI	GCNGC	3 cut(s)	273, 450, 458
Sau96I	GGNCC	3 cut(s)	29, 34, 736
ScaI	AGTACT	1 cut(s)	633
ScrFI	CCNGG	4 cut(s)	33, 54, 55, 269
SduI	GDGCHC	1 cut(s)	210
SfaNI	GCATC	2 cut(s)	52, 834
SmaI	CCCGGG	1 cut(s)	55
SmiMI	CAYNNNNRTG	2 cut(s)	801, 882
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SpeI	ACTAGT	1 cut(s)	85
SphI	GCATGC	1 cut(s)	595
Sse9I	AATT	1 cut(s)	613
SseBI	AGGCCT	1 cut(s)	746
SsiI	CCGC	3 cut(s)	41, 449, 458
SspMI	CTAG	4 cut(s)	86, 497, 635, 911
StuI	AGGCCT	1 cut(s)	746
StyD4I	CCNGG	4 cut(s)	31, 52, 53, 267
StyI	CCWWGG	1 cut(s)	173
TaaI	ACNGT	2 cut(s)	371, 686
TaiI	ACGT	3 cut(s)	326, 712, 905
TaqI	TCGA	4 cut(s)	20, 681, 779, 842
TasI	AATT	1 cut(s)	613
TatI	WGTACW	1 cut(s)	631
TauI	GCSGC	2 cut(s)	452, 460
TfiI	GAWTC	3 cut(s)	17, 116, 856
Tru1I	TTAA	2 cut(s)	467, 929
Tru9I	TTAA	2 cut(s)	467, 929
TscAI	CASTG	2 cut(s)	433, 451
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	6 cut(s)	83, 429, 750, 782, 866, 971
TspMI	CCCGGG	1 cut(s)	53
TspRI	CASTG	2 cut(s)	433, 451
Tth111I	GACNNNGTC	1 cut(s)	904
XagI	CCTNNNNNAGG	1 cut(s)	384
XceI	RCATGY	1 cut(s)	595
XmaI	CCCGGG	1 cut(s)	53
XspI	CTAG	4 cut(s)	86, 497, 635, 911
ZraI	GACGTC	1 cut(s)	903
ZrmI	AGTACT	1 cut(s)	633
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.