Rmu_ssc0000182.1_g000021

TMV resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000182.1
OG0017097
Physical Location & Seq
Reverse (-)
101519 .. 102169
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000182.1_g000021.1.cds

Sequence Viewer

Length: 555 bp
atggtaccgaccctctcttcgctgccgccgccgcctccccctcccggcccaccctgcgacgtgttcataaaccaccgcgggatcgacaccaagagaaccgtggcggggctgctgaactaccacctgtccagcaggctcaacctgcgtccttttttggacagcaagaacatgaagccaggggacaggttgtttgataagatcgacgcagcgattcggaaatgcaagcttgggatcgccgtgttttcaccgcaatactgcgaatcttacttctgtctccacgaactcgctcttctaatggaatctaaaaagagggttataccggttttctgcaacgtgaagccgtctcagcttagggttaaggataatggagtttgccctcagtacgagatcgagaggtttagtttggcgcttgaagaagccaaatacacagttggacttaccttcgactcctctaaagccgattggtcggagtttctaagagaggcttcggatgcggtgatgcagaacttgctggaggtagaaggagaacaagcatatctacaggagaaatgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIR TIR_2

Protein Analysis

184

Amino Acids

20.78

Weight (kDa)

6.82

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017097)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61105
fragaria_vesca FvH4_3g04640
malus_domestica MD10G1299700.v1.1
prunus_persica Prupe.4G041100_v2.0.a1
rosa_laevigata RLG00000031470
rosa_multiflora Rmu_co8469441.1_g000001 Rmu_ssc0000182.1_g000021
rosa_rugosa Rorug04G0428700
rosa_samantha Rh5AG056600 Rh5BG054000 Rh5CG063700 Rh5DG053000
rosa_wichuraiana Rw5G005380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 150
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 78
AciI CCGC 8 cut(s) 26, 29, 32, 76, 78, 104, 248, 494
AclWI GGATC 2 cut(s) 89, 239
AfaI GTAC 2 cut(s) 6, 383
AfiI CCNNNNNNNGG 2 cut(s) 44, 105
AflIII ACRYGT 1 cut(s) 60
AgeI ACCGGT 1 cut(s) 319
AgsI TTSAA 1 cut(s) 413
AjiI CACGTC 1 cut(s) 61
AjnI CCWGG 1 cut(s) 175
AluBI AGCT 2 cut(s) 226, 349
AluI AGCT 2 cut(s) 226, 349
Alw26I GTCTC 2 cut(s) 278, 348
AlwI GGATC 2 cut(s) 89, 239
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 3 cut(s) 22, 109, 206
ArsI GACNNNNNNTTYG 3 cut(s) 33, 173, 205
AsiGI ACCGGT 1 cut(s) 319
Asp718I GGTACC 1 cut(s) 4
AspLEI GCGC 1 cut(s) 409
AspS9I GGNCC 1 cut(s) 47
AsuC2I CCSGG 1 cut(s) 45
AsuHPI GGTGA 2 cut(s) 237, 508
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 3 cut(s) 9, 96, 218
BceAI ACGGC 2 cut(s) 221, 325
BciT130I CCWGG 1 cut(s) 177
BcnI CCSGG 1 cut(s) 45
BcoDI GTCTC 2 cut(s) 278, 348
BfaI CTAG 1 cut(s) 553
BfmI CTRYAG 1 cut(s) 539
BfoI RGCGCY 1 cut(s) 410
BfuAI ACCTGC 1 cut(s) 150
BisI GCNGC 6 cut(s) 23, 26, 29, 32, 110, 207
BlsI GCNGC 6 cut(s) 24, 27, 30, 33, 111, 208
Bme1390I CCNGG 2 cut(s) 45, 177
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 45, 177
BmsI GCATC 2 cut(s) 481, 489
BpmI CTGGAG 1 cut(s) 533
Bpu10I CCTNAGC 1 cut(s) 350
BpuMI CCSGG 1 cut(s) 45
BsaJI CCNNGG 3 cut(s) 76, 99, 176
BsaWI WCCGGW 1 cut(s) 319
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 105
Bse118I RCCGGY 1 cut(s) 319
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 3 cut(s) 76, 99, 176
BseGI GGATG 1 cut(s) 496
BseLI CCNNNNNNNGG 2 cut(s) 44, 105
BseMII CTCAG 2 cut(s) 359, 392
BseRI GAGGAG 1 cut(s) 439
BseXI GCAGC 3 cut(s) 9, 96, 218
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 1 cut(s) 48
BshNI GGYRCC 1 cut(s) 4
BshTI ACCGGT 1 cut(s) 319
BsiSI CCGG 2 cut(s) 45, 320
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 2 cut(s) 44, 105
BsmAI GTCTC 2 cut(s) 278, 348
BsmBI CGTCTC 1 cut(s) 348
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 1 cut(s) 48
Bsp143I GATC 4 cut(s) 81, 198, 231, 387
BspACI CCGC 8 cut(s) 26, 29, 32, 76, 78, 104, 248, 494
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 2 cut(s) 358, 391
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 150
BspPI GGATC 2 cut(s) 89, 239
BspQI GCTCTTC 1 cut(s) 294
BspT107I GGYRCC 1 cut(s) 4
BsrFI RCCGGY 1 cut(s) 319
BssAI RCCGGY 1 cut(s) 319
BssECI CCNNGG 3 cut(s) 76, 99, 176
BssMI GATC 4 cut(s) 81, 198, 231, 387
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 2 cut(s) 100, 430
Bst6I CTCTTC 2 cut(s) 22, 294
BstAPI GCANNNNNTGC 1 cut(s) 508
BstC8I GCNNGC 2 cut(s) 134, 224
BstDEI CTNAG 4 cut(s) 345, 350, 378, 476
BstDSI CCRYGG 2 cut(s) 76, 99
BstF5I GGATG 1 cut(s) 496
BstFNI CGCG 1 cut(s) 78
BstH2I RGCGCY 1 cut(s) 410
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 4 cut(s) 84, 201, 234, 390
BstMAI GTCTC 2 cut(s) 278, 348
BstMBI GATC 4 cut(s) 81, 198, 231, 387
BstMWI GCNNNNNNNGC 7 cut(s) 28, 31, 54, 142, 346, 491, 508
BstNI CCWGG 1 cut(s) 177
BstSCI CCNGG 2 cut(s) 43, 175
BstSFI CTRYAG 1 cut(s) 539
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 3 cut(s) 9, 96, 218
BsuRI GGCC 1 cut(s) 48
BtgI CCRYGG 2 cut(s) 76, 99
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 1 cut(s) 496
BveI ACCTGC 1 cut(s) 150
Cac8I GCNNGC 2 cut(s) 134, 224
CfoI GCGC 1 cut(s) 409
Cfr10I RCCGGY 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 47
Cfr42I CCGCGG 1 cut(s) 79
CseI GACGC 2 cut(s) 134, 212
Csp6I GTAC 2 cut(s) 5, 382
CspAI ACCGGT 1 cut(s) 319
CviAII CATG 1 cut(s) 169
CviQI GTAC 2 cut(s) 5, 382
DdeI CTNAG 4 cut(s) 345, 350, 378, 476
DpnI GATC 4 cut(s) 83, 200, 233, 389
DpnII GATC 4 cut(s) 81, 198, 231, 387
Eam1104I CTCTTC 2 cut(s) 22, 294
EarI CTCTTC 2 cut(s) 22, 294
EcoRII CCWGG 1 cut(s) 175
Esp3I CGTCTC 1 cut(s) 348
FaeI CATG 1 cut(s) 172
FaiI YATR 4 cut(s) 68, 170, 317, 535
FalI AAGNNNNNCTT 2 cut(s) 469, 501
FaqI GGGAC 1 cut(s) 194
FatI CATG 1 cut(s) 168
FauI CCCGC 2 cut(s) 71, 97
Fnu4HI GCNGC 6 cut(s) 23, 26, 29, 32, 110, 207
FokI GGATG 1 cut(s) 503
Fsp4HI GCNGC 6 cut(s) 23, 26, 29, 32, 110, 207
FspBI CTAG 1 cut(s) 553
GlaI GCGC 1 cut(s) 408
GluI GCNGC 6 cut(s) 23, 26, 29, 32, 110, 207
GsuI CTGGAG 1 cut(s) 533
HaeII RGCGCY 1 cut(s) 410
HaeIII GGCC 1 cut(s) 48
HapII CCGG 2 cut(s) 45, 320
HgaI GACGC 2 cut(s) 134, 212
HhaI GCGC 1 cut(s) 409
Hin1II CATG 1 cut(s) 172
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 4 cut(s) 211, 260, 299, 446
HpaII CCGG 2 cut(s) 45, 320
HphI GGTGA 2 cut(s) 237, 508
Hpy188I TCNGA 3 cut(s) 216, 469, 490
Hpy188III TCNNGA 1 cut(s) 391
Hpy99I CGWCG 2 cut(s) 62, 206
HpyAV CCTTC 2 cut(s) 451, 515
HpyCH4III ACNGT 2 cut(s) 100, 430
HpyCH4IV ACGT 2 cut(s) 60, 333
HpyCH4V TGCA 3 cut(s) 222, 330, 502
HpyF10VI GCNNNNNNNGC 7 cut(s) 28, 31, 54, 142, 346, 491, 508
HpyF3I CTNAG 4 cut(s) 345, 350, 378, 476
HpySE526I ACGT 2 cut(s) 60, 333
Hsp92II CATG 1 cut(s) 172
HspAI GCGC 1 cut(s) 407
KpnI GGTACC 1 cut(s) 8
KspI CCGCGG 1 cut(s) 79
Kzo9I GATC 4 cut(s) 81, 198, 231, 387
LguI GCTCTTC 1 cut(s) 294
Lsp1109I GCAGC 3 cut(s) 9, 96, 218
LweI GCATC 2 cut(s) 481, 489
MaeI CTAG 1 cut(s) 553
MaeII ACGT 2 cut(s) 60, 333
MalI GATC 4 cut(s) 83, 200, 233, 389
MboI GATC 4 cut(s) 81, 198, 231, 387
MboII GAAGA 3 cut(s) 9, 281, 425
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 2 cut(s) 412, 447
MnlI CCTC 9 cut(s) 23, 45, 51, 303, 387, 387, 460, 475, 508
MseI TTAA 1 cut(s) 357
MspA1I CMGCKG 1 cut(s) 78
MspI CCGG 2 cut(s) 45, 320
MspR9I CCNGG 2 cut(s) 45, 177
MvaI CCWGG 1 cut(s) 177
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 7 cut(s) 28, 31, 54, 142, 346, 491, 508
NciI CCSGG 1 cut(s) 45
NdeII GATC 4 cut(s) 81, 198, 231, 387
NlaIII CATG 1 cut(s) 172
NlaIV GGNNCC 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 294
PfeI GAWTC 3 cut(s) 211, 260, 299
PinAI ACCGGT 1 cut(s) 319
PkrI GCNGC 6 cut(s) 24, 27, 30, 33, 111, 208
PleI GAGTC 1 cut(s) 440
PpsI GAGTC 1 cut(s) 440
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 47
RsaI GTAC 2 cut(s) 6, 383
RsaNI GTAC 2 cut(s) 5, 382
SacII CCGCGG 1 cut(s) 79
SapI GCTCTTC 1 cut(s) 294
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 6 cut(s) 23, 26, 29, 32, 110, 207
Sau3AI GATC 4 cut(s) 81, 198, 231, 387
Sau96I GGNCC 1 cut(s) 47
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 2 cut(s) 45, 177
SfaNI GCATC 2 cut(s) 481, 489
SfcI CTRYAG 1 cut(s) 539
Sfr303I CCGCGG 1 cut(s) 79
SgrBI CCGCGG 1 cut(s) 79
SsiI CCGC 8 cut(s) 26, 29, 32, 76, 78, 104, 248, 494
SspMI CTAG 1 cut(s) 553
StyD4I CCNGG 2 cut(s) 43, 175
TaaI ACNGT 2 cut(s) 100, 430
TaiI ACGT 2 cut(s) 63, 336
TaqI TCGA 4 cut(s) 84, 201, 390, 444
TauI GCSGC 3 cut(s) 28, 31, 34
TfiI GAWTC 3 cut(s) 211, 260, 299
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TseI GCWGC 3 cut(s) 22, 109, 206
TspDTI ATGAA 2 cut(s) 55, 185
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XspI CTAG 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.