FvH4_3g04640

TMV resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017097
Physical Location & Seq
Reverse (-)
2662560 .. 2663368
809 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04640.t1

Sequence Viewer

Length: 624 bp
ATGCAGCGTTCATCACCAGCTTTGGTTCGTCAGATACTCCGCCAAAACCGCATGAGCAACGTCCAAATGGTACCGGCCCTCTCTTCGGTGGCGCCGCCTCCCCCTCCCGGCCCACCCTGCGACGTGTTCATAAACCACCGCGGGATAGACACGAAAAGAACCGTGGCGGGGCTGCTGAACTACCACCTGTCTAGCAGGCTCAACCTGCGTCCTTTTTTGGACAGCAAGAACATGAAACCCGGGGACAGGTTGTTTGACAAGATCGACGCCGCGATTCGGAAATGCAAGCTTGGGATAGCCGTGTTTTCGCCGCAGTACTGCGAGTCTTATTTCTGCCTCCACGAGCTCGCTCTTTTAATGGAATCTAAAAAGAGGGTTATACCGGTTTTCTGCAACGTGAAGCCGTCTCAGCTTCGGGTTAAGGACAATGGAGTTTGCCCTCAGTACGAGATTGAGAGGTTTAGTTGGGCGCTTGAAGAAGCCAAATACACAGTTGGACTCACTTTCGACTCCTCTAAAGCTGATTGGTCGGAGTTTCTAAGAGAGGCTTCGGATGCAGTGATACAGAACTTGCTGGAGCTAGAAGGAGAACAGGCATATCTACAAGAGAAGTGCCAGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIR TIR_2

Protein Analysis

208

Amino Acids

23.53

Weight (kDa)

8.66

Isoelectric Point (pI)

56.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 41 - 140 1.2e-15 TIR domain
TIR_2 PF13676 42 - 135 2.2e-15 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017097)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61105
fragaria_vesca FvH4_3g04640
malus_domestica MD10G1299700.v1.1
prunus_persica Prupe.4G041100_v2.0.a1
rosa_laevigata RLG00000031470
rosa_multiflora Rmu_co8469441.1_g000001 Rmu_ssc0000182.1_g000021
rosa_rugosa Rorug04G0428700
rosa_samantha Rh5AG056600 Rh5BG054000 Rh5CG063700 Rh5DG053000
rosa_wichuraiana Rw5G005380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 213
Acc65I GGTACC 1 cut(s) 70
AccB1I GGYRCC 2 cut(s) 70, 91
AccII CGCG 2 cut(s) 141, 272
AciI CCGC 8 cut(s) 40, 49, 95, 139, 141, 167, 270, 311
AcyI GRCGYC 2 cut(s) 92, 267
AfaI GTAC 3 cut(s) 72, 317, 446
AfiI CCNNNNNNNGG 5 cut(s) 85, 107, 168, 246, 276
AflIII ACRYGT 1 cut(s) 123
AgeI ACCGGT 1 cut(s) 382
AgsI TTSAA 1 cut(s) 476
AjiI CACGTC 1 cut(s) 124
AluBI AGCT 6 cut(s) 20, 289, 346, 412, 521, 580
AluI AGCT 6 cut(s) 20, 289, 346, 412, 521, 580
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 1 cut(s) 411
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 2 cut(s) 75, 109
ApeKI GCWGC 2 cut(s) 4, 172
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
AsiGI ACCGGT 1 cut(s) 382
Asp718I GGTACC 1 cut(s) 70
AspLEI GCGC 2 cut(s) 94, 472
AspS9I GGNCC 2 cut(s) 76, 110
AsuC2I CCSGG 3 cut(s) 108, 240, 241
AsuHPI GGTGA 1 cut(s) 6
AvaI CYCGRG 1 cut(s) 239
BanI GGYRCC 2 cut(s) 70, 91
BanII GRGCYC 1 cut(s) 348
BauI CACGAG 1 cut(s) 341
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 2 cut(s) 16, 159
BceAI ACGGC 2 cut(s) 284, 388
BcnI CCSGG 3 cut(s) 108, 240, 241
BcoDI GTCTC 1 cut(s) 411
BfaI CTAG 2 cut(s) 192, 581
BfoI RGCGCY 2 cut(s) 95, 473
BfuAI ACCTGC 1 cut(s) 213
BisI GCNGC 5 cut(s) 5, 95, 173, 270, 311
BlsI GCNGC 5 cut(s) 6, 96, 174, 271, 312
BmcAI AGTACT 1 cut(s) 317
Bme1390I CCNGG 3 cut(s) 108, 240, 241
BmeT110I CYCGRG 1 cut(s) 239
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 2 cut(s) 76, 110
BmiI GGNNCC 2 cut(s) 72, 93
BmrFI CCNGG 3 cut(s) 108, 240, 241
BmsI GCATC 1 cut(s) 544
BpmI CTGGAG 1 cut(s) 596
BpuMI CCSGG 3 cut(s) 108, 240, 241
BsaHI GRCGYC 2 cut(s) 92, 267
BsaJI CCNNGG 4 cut(s) 139, 162, 239, 240
BsaWI WCCGGW 1 cut(s) 382
Bsc4I CCNNNNNNNGG 5 cut(s) 85, 107, 168, 246, 276
Bse118I RCCGGY 2 cut(s) 73, 382
BseDI CCNNGG 4 cut(s) 139, 162, 239, 240
BseGI GGATG 1 cut(s) 559
BseLI CCNNNNNNNGG 5 cut(s) 85, 107, 168, 246, 276
BseMII CTCAG 2 cut(s) 422, 455
BseRI GAGGAG 1 cut(s) 502
BseXI GCAGC 2 cut(s) 16, 159
Bsh1236I CGCG 2 cut(s) 141, 272
BshFI GGCC 2 cut(s) 77, 111
BshNI GGYRCC 2 cut(s) 70, 91
BshTI ACCGGT 1 cut(s) 382
BsiHKAI GWGCWC 1 cut(s) 348
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 4 cut(s) 74, 108, 240, 383
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 5 cut(s) 85, 107, 168, 246, 276
BsmAI GTCTC 1 cut(s) 411
BsmBI CGTCTC 1 cut(s) 411
BsmFI GGGAC 1 cut(s) 257
BsnI GGCC 2 cut(s) 77, 111
BsoBI CYCGRG 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 1 cut(s) 261
BspACI CCGC 8 cut(s) 40, 49, 95, 139, 141, 167, 270, 311
BspANI GGCC 2 cut(s) 77, 111
BspCNI CTCAG 2 cut(s) 421, 454
BspFNI CGCG 2 cut(s) 141, 272
BspLI GGNNCC 2 cut(s) 72, 93
BspMI ACCTGC 1 cut(s) 213
BspT107I GGYRCC 2 cut(s) 70, 91
BsrFI RCCGGY 2 cut(s) 73, 382
BssAI RCCGGY 2 cut(s) 73, 382
BssECI CCNNGG 4 cut(s) 139, 162, 239, 240
BssMI GATC 1 cut(s) 261
BssNI GRCGYC 2 cut(s) 92, 267
BssSI CACGAG 1 cut(s) 341
Bst2BI CACGAG 1 cut(s) 341
Bst4CI ACNGT 2 cut(s) 163, 493
Bst6I CTCTTC 1 cut(s) 88
BstACI GRCGYC 2 cut(s) 92, 267
BstC8I GCNNGC 4 cut(s) 197, 287, 348, 617
BstDEI CTNAG 3 cut(s) 408, 441, 539
BstDSI CCRYGG 2 cut(s) 139, 162
BstF5I GGATG 1 cut(s) 559
BstFNI CGCG 2 cut(s) 141, 272
BstH2I RGCGCY 2 cut(s) 95, 473
BstHHI GCGC 2 cut(s) 94, 472
BstKTI GATC 1 cut(s) 264
BstMAI GTCTC 1 cut(s) 411
BstMBI GATC 1 cut(s) 261
BstMWI GCNNNNNNNGC 5 cut(s) 48, 117, 205, 409, 554
BstSCI CCNGG 3 cut(s) 106, 238, 239
BstUI CGCG 2 cut(s) 141, 272
BstV1I GCAGC 2 cut(s) 16, 159
BsuRI GGCC 2 cut(s) 77, 111
BtgI CCRYGG 2 cut(s) 139, 162
BtrI CACGTC 1 cut(s) 124
BtsCI GGATG 1 cut(s) 559
BtsI GCAGTG 1 cut(s) 564
BtsIMutI CAGTG 1 cut(s) 564
BveI ACCTGC 1 cut(s) 213
Cac8I GCNNGC 4 cut(s) 197, 287, 348, 617
CfoI GCGC 2 cut(s) 94, 472
Cfr10I RCCGGY 2 cut(s) 73, 382
Cfr13I GGNCC 2 cut(s) 76, 110
Cfr42I CCGCGG 1 cut(s) 142
Cfr9I CCCGGG 1 cut(s) 239
CseI GACGC 2 cut(s) 197, 275
Csp6I GTAC 3 cut(s) 71, 316, 445
CspAI ACCGGT 1 cut(s) 382
CviAII CATG 2 cut(s) 52, 232
CviQI GTAC 3 cut(s) 71, 316, 445
DdeI CTNAG 3 cut(s) 408, 441, 539
DinI GGCGCC 1 cut(s) 93
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
EciI GGCGGA 1 cut(s) 29
Ecl136II GAGCTC 1 cut(s) 346
Eco24I GRGCYC 1 cut(s) 348
Eco53kI GAGCTC 1 cut(s) 346
Eco88I CYCGRG 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 346
EcoT38I GRGCYC 1 cut(s) 348
EgeI GGCGCC 1 cut(s) 93
EheI GGCGCC 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 411
FaeI CATG 2 cut(s) 55, 235
FaiI YATR 5 cut(s) 53, 131, 233, 380, 598
FalI AAGNNNNNCTT 2 cut(s) 532, 564
FaqI GGGAC 1 cut(s) 257
FatI CATG 2 cut(s) 51, 231
FauI CCCGC 2 cut(s) 134, 160
Fnu4HI GCNGC 5 cut(s) 5, 95, 173, 270, 311
FokI GGATG 1 cut(s) 566
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 5 cut(s) 5, 95, 173, 270, 311
FspBI CTAG 2 cut(s) 192, 581
GlaI GCGC 2 cut(s) 93, 471
GluI GCNGC 5 cut(s) 5, 95, 173, 270, 311
GsuI CTGGAG 1 cut(s) 596
HaeII RGCGCY 2 cut(s) 95, 473
HaeIII GGCC 2 cut(s) 77, 111
HapII CCGG 4 cut(s) 74, 108, 240, 383
HgaI GACGC 2 cut(s) 197, 275
HhaI GCGC 2 cut(s) 94, 472
Hin1I GRCGYC 2 cut(s) 92, 267
Hin1II CATG 2 cut(s) 55, 235
Hin6I GCGC 2 cut(s) 92, 470
HinP1I GCGC 2 cut(s) 92, 470
HindIII AAGCTT 1 cut(s) 287
HinfI GANTC 5 cut(s) 274, 323, 362, 498, 509
HpaII CCGG 4 cut(s) 74, 108, 240, 383
HphI GGTGA 1 cut(s) 6
Hpy188I TCNGA 4 cut(s) 33, 279, 532, 553
Hpy99I CGWCG 2 cut(s) 125, 269
HpyAV CCTTC 1 cut(s) 578
HpyCH4III ACNGT 2 cut(s) 163, 493
HpyCH4IV ACGT 3 cut(s) 60, 123, 396
HpyCH4V TGCA 4 cut(s) 4, 285, 393, 557
HpyF10VI GCNNNNNNNGC 5 cut(s) 48, 117, 205, 409, 554
HpyF3I CTNAG 3 cut(s) 408, 441, 539
HpySE526I ACGT 3 cut(s) 60, 123, 396
Hsp92I GRCGYC 2 cut(s) 92, 267
Hsp92II CATG 2 cut(s) 55, 235
HspAI GCGC 2 cut(s) 92, 470
KasI GGCGCC 1 cut(s) 91
KpnI GGTACC 1 cut(s) 74
KspI CCGCGG 1 cut(s) 142
Kzo9I GATC 1 cut(s) 261
LmnI GCTCC 1 cut(s) 577
Lsp1109I GCAGC 2 cut(s) 16, 159
LweI GCATC 1 cut(s) 544
MaeI CTAG 2 cut(s) 192, 581
MaeII ACGT 3 cut(s) 60, 123, 396
MalI GATC 1 cut(s) 263
MboI GATC 1 cut(s) 261
MboII GAAGA 2 cut(s) 75, 488
MhlI GDGCHC 1 cut(s) 348
Mly113I GGCGCC 1 cut(s) 92
MlyI GAGTC 3 cut(s) 332, 492, 503
MmeI TCCRAC 2 cut(s) 475, 510
MnlI CCTC 9 cut(s) 89, 108, 114, 347, 366, 450, 450, 523, 538
MseI TTAA 2 cut(s) 356, 420
MspA1I CMGCKG 1 cut(s) 141
MspI CCGG 4 cut(s) 74, 108, 240, 383
MspR9I CCNGG 3 cut(s) 108, 240, 241
MvnI CGCG 2 cut(s) 141, 272
MwoI GCNNNNNNNGC 5 cut(s) 48, 117, 205, 409, 554
NarI GGCGCC 1 cut(s) 92
NciI CCSGG 3 cut(s) 108, 240, 241
NdeII GATC 1 cut(s) 261
NlaIII CATG 2 cut(s) 55, 235
NlaIV GGNNCC 2 cut(s) 72, 93
PfeI GAWTC 2 cut(s) 274, 362
PinAI ACCGGT 1 cut(s) 382
PkrI GCNGC 5 cut(s) 6, 96, 174, 271, 312
PleI GAGTC 3 cut(s) 331, 492, 503
PluTI GGCGCC 1 cut(s) 95
PpsI GAGTC 3 cut(s) 331, 492, 503
Psp124BI GAGCTC 1 cut(s) 348
PspN4I GGNNCC 2 cut(s) 72, 93
PspPI GGNCC 2 cut(s) 76, 110
RsaI GTAC 3 cut(s) 72, 317, 446
RsaNI GTAC 3 cut(s) 71, 316, 445
SacI GAGCTC 1 cut(s) 348
SacII CCGCGG 1 cut(s) 142
SaqAI TTAA 2 cut(s) 356, 420
SatI GCNGC 5 cut(s) 5, 95, 173, 270, 311
Sau3AI GATC 1 cut(s) 261
Sau96I GGNCC 2 cut(s) 76, 110
ScaI AGTACT 1 cut(s) 317
SchI GAGTC 3 cut(s) 332, 492, 503
ScrFI CCNGG 3 cut(s) 108, 240, 241
SduI GDGCHC 1 cut(s) 348
SfaNI GCATC 1 cut(s) 544
SfoI GGCGCC 1 cut(s) 93
Sfr303I CCGCGG 1 cut(s) 142
SgrBI CCGCGG 1 cut(s) 142
SmaI CCCGGG 1 cut(s) 241
SsiI CCGC 8 cut(s) 40, 49, 95, 139, 141, 167, 270, 311
SspDI GGCGCC 1 cut(s) 91
SspMI CTAG 2 cut(s) 192, 581
SstI GAGCTC 1 cut(s) 348
StyD4I CCNGG 3 cut(s) 106, 238, 239
TaaI ACNGT 2 cut(s) 163, 493
TaiI ACGT 3 cut(s) 63, 126, 399
TaqI TCGA 2 cut(s) 264, 507
TatI WGTACW 1 cut(s) 315
TauI GCSGC 3 cut(s) 97, 272, 313
TfiI GAWTC 2 cut(s) 274, 362
Tru1I TTAA 2 cut(s) 356, 420
Tru9I TTAA 2 cut(s) 356, 420
TscAI CASTG 1 cut(s) 564
TseI GCWGC 2 cut(s) 4, 172
TspDTI ATGAA 2 cut(s) 118, 248
TspMI CCCGGG 1 cut(s) 239
TspRI CASTG 1 cut(s) 564
XmaI CCCGGG 1 cut(s) 239
XspI CTAG 2 cut(s) 192, 581
ZrmI AGTACT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.