Prupe.4G041100_v2.0.a1

TMV resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0017097
Physical Location & Seq
Reverse (-)
1937175 .. 1937872
698 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G041100.1

Sequence Viewer

Length: 597 bp
ATGCAGCGTTCACCAGCTTTGGTTCGCAAAATTCTTCGCCAAGGAAGCAACCACATCCAAACCGTTAATTCCAGGCCATGCGACGTGTTCATTAACCACCGTGGGATTGACACCAAGAGAACCGTGGCCGGGTTGCTCTTTTACCATTTCTCGCGGCTCAGGCTGCATCCGTTTTTGGACAGCAAGAACATGAAACCTGGGGACAAGCTGTTCGATGAAATCGATGCTGCGATTCGAAAATGCAAGGTGGGGCTTGCCGTGTTTTCGCCTCAGTATTGTGAATCTTACTTTTGTCTTCATGAGTTGGCTCTGTTAATGGAGTCCAAGAAGAGGGTGATACCAGTTTTCTGTAATGTAAAGCCGTCTCAACTTAGGGTCAGGGACAATGGAACTTGCTCTCCAGTTGAACTTCAAAGGTTCAGTTGGGCGCTTGAAGAAGCCAAGTATACCGTTGGACTTACTTTCGACTCCTCCAAAGGGGATTGGTCGGAGTTCCTGAGAGACGCTTCTGATGCGGTGTTGCAGAACTTGCTGGAGGTAGAAGGAGAAGGAGCATACAAGATTGACCATAAATACGATTTTCAGGATCAATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIR TIR_2

Protein Analysis

199

Amino Acids

22.75

Weight (kDa)

8.44

Isoelectric Point (pI)

49.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017097)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61105
fragaria_vesca FvH4_3g04640
malus_domestica MD10G1299700.v1.1
prunus_persica Prupe.4G041100_v2.0.a1
rosa_laevigata RLG00000031470
rosa_multiflora Rmu_co8469441.1_g000001 Rmu_ssc0000182.1_g000021
rosa_rugosa Rorug04G0428700
rosa_samantha Rh5AG056600 Rh5BG054000 Rh5CG063700 Rh5DG053000
rosa_wichuraiana Rw5G005380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 446
AccII CGCG 1 cut(s) 154
AciI CCGC 2 cut(s) 154, 515
AclWI GGATC 1 cut(s) 594
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 1 cut(s) 30
AfiI CCNNNNNNNGG 3 cut(s) 129, 330, 477
AflIII ACRYGT 1 cut(s) 84
AgsI TTSAA 3 cut(s) 407, 413, 434
AjiI CACGTC 1 cut(s) 85
AjnI CCWGG 2 cut(s) 71, 196
AloI GAACNNNNNNTCC 4 cut(s) 194, 226, 382, 414
AluBI AGCT 2 cut(s) 17, 208
AluI AGCT 2 cut(s) 17, 208
Alw26I GTCTC 2 cut(s) 369, 495
AlwI GGATC 1 cut(s) 594
AoxI GGCC 2 cut(s) 74, 126
ApeKI GCWGC 3 cut(s) 4, 163, 227
ApoI RAATTY 1 cut(s) 30
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
AspLEI GCGC 1 cut(s) 430
AsuC2I CCSGG 1 cut(s) 130
AsuHPI GGTGA 2 cut(s) 3, 346
AsuII TTCGAA 1 cut(s) 235
BbsI GAAGAC 1 cut(s) 287
BbvI GCAGC 3 cut(s) 16, 150, 214
BceAI ACGGC 2 cut(s) 242, 346
BciT130I CCWGG 2 cut(s) 73, 198
BcnI CCSGG 1 cut(s) 130
BcoDI GTCTC 2 cut(s) 369, 495
BfoI RGCGCY 1 cut(s) 431
BisI GCNGC 4 cut(s) 5, 155, 164, 228
BlsI GCNGC 4 cut(s) 6, 156, 165, 229
Bme1390I CCNGG 3 cut(s) 73, 130, 198
BmgBI CACGTC 1 cut(s) 85
BmrFI CCNGG 3 cut(s) 73, 130, 198
BmsI GCATC 3 cut(s) 175, 214, 502
BpiI GAAGAC 1 cut(s) 287
BpmI CTGGAG 2 cut(s) 384, 554
Bpu10I CCTNAGC 1 cut(s) 158
Bpu14I TTCGAA 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 130
Bsa29I ATCGAT 1 cut(s) 222
BsaJI CCNNGG 4 cut(s) 40, 100, 123, 197
BsaXI ACNNNNNCTCC 2 cut(s) 382, 412
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 330, 477
Bse1I ACTGG 2 cut(s) 341, 401
BseBI CCWGG 2 cut(s) 73, 198
BseCI ATCGAT 1 cut(s) 222
BseDI CCNNGG 4 cut(s) 40, 100, 123, 197
BseGI GGATG 2 cut(s) 54, 166
BseLI CCNNNNNNNGG 3 cut(s) 129, 330, 477
BseMII CTCAG 3 cut(s) 172, 284, 488
BseNI ACTGG 2 cut(s) 341, 401
BseRI GAGGAG 1 cut(s) 460
BseXI GCAGC 3 cut(s) 16, 150, 214
Bsh1236I CGCG 1 cut(s) 154
BshFI GGCC 2 cut(s) 76, 128
BshVI ATCGAT 1 cut(s) 222
BsiSI CCGG 1 cut(s) 129
BslFI GGGAC 2 cut(s) 215, 395
BslI CCNNNNNNNGG 3 cut(s) 129, 330, 477
BsmAI GTCTC 2 cut(s) 369, 495
BsmBI CGTCTC 2 cut(s) 369, 495
BsmFI GGGAC 2 cut(s) 215, 395
BsnI GGCC 2 cut(s) 76, 128
Bsp119I TTCGAA 1 cut(s) 235
Bsp143I GATC 1 cut(s) 586
BspACI CCGC 2 cut(s) 154, 515
BspANI GGCC 2 cut(s) 76, 128
BspCNI CTCAG 3 cut(s) 171, 283, 489
BspDI ATCGAT 1 cut(s) 222
BspFNI CGCG 1 cut(s) 154
BspHI TCATGA 1 cut(s) 298
BspPI GGATC 1 cut(s) 594
BspT104I TTCGAA 1 cut(s) 235
BsrI ACTGG 2 cut(s) 341, 401
BssECI CCNNGG 4 cut(s) 40, 100, 123, 197
BssMI GATC 1 cut(s) 586
BssNAI GTATAC 1 cut(s) 447
BssT1I CCWWGG 1 cut(s) 40
Bst1107I GTATAC 1 cut(s) 447
Bst2UI CCWGG 2 cut(s) 73, 198
Bst4CI ACNGT 4 cut(s) 64, 101, 124, 451
Bst6I CTCTTC 1 cut(s) 323
BstAPI GCANNNNNTGC 1 cut(s) 529
BstBI TTCGAA 1 cut(s) 235
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 4 cut(s) 158, 270, 371, 497
BstDSI CCRYGG 2 cut(s) 100, 123
BstF5I GGATG 2 cut(s) 54, 166
BstFNI CGCG 1 cut(s) 154
BstH2I RGCGCY 1 cut(s) 431
BstHHI GCGC 1 cut(s) 430
BstKTI GATC 1 cut(s) 589
BstMAI GTCTC 2 cut(s) 369, 495
BstMBI GATC 1 cut(s) 586
BstMWI GCNNNNNNNGC 5 cut(s) 45, 160, 163, 512, 529
BstNI CCWGG 2 cut(s) 73, 198
BstSCI CCNGG 3 cut(s) 71, 128, 196
BstUI CGCG 1 cut(s) 154
BstV1I GCAGC 3 cut(s) 16, 150, 214
BstV2I GAAGAC 1 cut(s) 287
BstZ17I GTATAC 1 cut(s) 447
Bsu15I ATCGAT 1 cut(s) 222
BsuRI GGCC 2 cut(s) 76, 128
BsuTUI ATCGAT 1 cut(s) 222
BtgI CCRYGG 2 cut(s) 100, 123
BtrI CACGTC 1 cut(s) 85
BtsCI GGATG 2 cut(s) 54, 166
Cac8I GCNNGC 1 cut(s) 255
CciI TCATGA 1 cut(s) 298
CfoI GCGC 1 cut(s) 430
ClaI ATCGAT 1 cut(s) 222
CseI GACGC 1 cut(s) 512
CviAII CATG 3 cut(s) 78, 190, 299
DdeI CTNAG 4 cut(s) 158, 270, 371, 497
DpnI GATC 1 cut(s) 588
DpnII GATC 1 cut(s) 586
EaeI YGGCCR 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 323
Eco130I CCWWGG 1 cut(s) 40
EcoRII CCWGG 2 cut(s) 71, 196
EcoT14I CCWWGG 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 40
Esp3I CGTCTC 2 cut(s) 369, 495
FaeI CATG 3 cut(s) 81, 193, 302
FaiI YATR 6 cut(s) 79, 191, 300, 447, 556, 570
FaqI GGGAC 2 cut(s) 215, 395
FatI CATG 3 cut(s) 77, 189, 298
FblI GTMKAC 1 cut(s) 446
Fnu4HI GCNGC 4 cut(s) 5, 155, 164, 228
FokI GGATG 2 cut(s) 41, 153
Fsp4HI GCNGC 4 cut(s) 5, 155, 164, 228
GlaI GCGC 1 cut(s) 429
GluI GCNGC 4 cut(s) 5, 155, 164, 228
GsuI CTGGAG 2 cut(s) 384, 554
HaeII RGCGCY 1 cut(s) 431
HaeIII GGCC 2 cut(s) 76, 128
HapII CCGG 1 cut(s) 129
HgaI GACGC 1 cut(s) 512
HhaI GCGC 1 cut(s) 430
Hin1II CATG 3 cut(s) 81, 193, 302
Hin6I GCGC 1 cut(s) 428
HinP1I GCGC 1 cut(s) 428
HinfI GANTC 4 cut(s) 232, 281, 320, 467
HpaII CCGG 1 cut(s) 129
HphI GGTGA 2 cut(s) 3, 346
Hpy166II GTNNAC 2 cut(s) 11, 447
Hpy188I TCNGA 2 cut(s) 490, 511
Hpy188III TCNNGA 3 cut(s) 299, 496, 584
Hpy8I GTNNAC 2 cut(s) 11, 447
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 2 cut(s) 536, 542
HpyCH4III ACNGT 4 cut(s) 64, 101, 124, 451
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 4 cut(s) 4, 166, 243, 523
HpyF10VI GCNNNNNNNGC 5 cut(s) 45, 160, 163, 512, 529
HpyF3I CTNAG 4 cut(s) 158, 270, 371, 497
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 3 cut(s) 81, 193, 302
HspAI GCGC 1 cut(s) 428
Kzo9I GATC 1 cut(s) 586
LmnI GCTCC 1 cut(s) 551
Lsp1109I GCAGC 3 cut(s) 16, 150, 214
LweI GCATC 3 cut(s) 175, 214, 502
MaeII ACGT 1 cut(s) 84
MalI GATC 1 cut(s) 588
MboI GATC 1 cut(s) 586
MboII GAAGA 4 cut(s) 26, 287, 340, 446
MluCI AATT 2 cut(s) 30, 67
MlyI GAGTC 2 cut(s) 329, 461
MmeI TCCRAC 2 cut(s) 433, 468
MnlI CCTC 4 cut(s) 279, 324, 481, 529
MseI TTAA 4 cut(s) 66, 93, 314, 595
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 3 cut(s) 73, 130, 198
MvaI CCWGG 2 cut(s) 73, 198
MvnI CGCG 1 cut(s) 154
MwoI GCNNNNNNNGC 5 cut(s) 45, 160, 163, 512, 529
NciI CCSGG 1 cut(s) 130
NdeII GATC 1 cut(s) 586
NlaIII CATG 3 cut(s) 81, 193, 302
NspV TTCGAA 1 cut(s) 235
PagI TCATGA 1 cut(s) 298
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PfeI GAWTC 2 cut(s) 232, 281
PkrI GCNGC 4 cut(s) 6, 156, 165, 229
PleI GAGTC 2 cut(s) 328, 461
PpsI GAGTC 2 cut(s) 328, 461
Psp6I CCWGG 2 cut(s) 71, 196
PspGI CCWGG 2 cut(s) 71, 196
SaqAI TTAA 4 cut(s) 66, 93, 314, 595
SatI GCNGC 4 cut(s) 5, 155, 164, 228
Sau3AI GATC 1 cut(s) 586
SchI GAGTC 2 cut(s) 329, 461
ScrFI CCNGG 3 cut(s) 73, 130, 198
SetI ASST 7 cut(s) 19, 87, 199, 210, 249, 419, 540
SfaNI GCATC 3 cut(s) 175, 214, 502
SfuI TTCGAA 1 cut(s) 235
Sse9I AATT 2 cut(s) 30, 67
SsiI CCGC 2 cut(s) 154, 515
StyD4I CCNGG 3 cut(s) 71, 128, 196
StyI CCWWGG 1 cut(s) 40
TaaI ACNGT 4 cut(s) 64, 101, 124, 451
TaiI ACGT 1 cut(s) 87
TaqI TCGA 4 cut(s) 213, 222, 235, 465
TasI AATT 2 cut(s) 30, 67
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 2 cut(s) 232, 281
Tru1I TTAA 4 cut(s) 66, 93, 314, 595
Tru9I TTAA 4 cut(s) 66, 93, 314, 595
TseI GCWGC 3 cut(s) 4, 163, 227
TspDTI ATGAA 4 cut(s) 79, 206, 231, 287
TspGWI ACGGA 1 cut(s) 159
XapI RAATTY 1 cut(s) 30
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
XmiI GTMKAC 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.