Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013402

Physical Location & Seq

Genomic Coordinates Reverse (-)

22718462 .. 22719535

Gene Structure 1074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G61570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGATTCATACTCTTCGCCGCCGATGGGAGGTTCAGGTAGTTCGGTTTCGCCCGAAGTAATGATGGAGTCGGTCAAGACTCAGCTCGCTCAAGCTTACGCCGAAGAGTTAATCGAGACTTTGAGGACAAAATGTTTTGACAAGTGCGTAACGAAGCCAGGATCAAGCCTCGGTGGAAGTGAGAGTAGCTGTATTTCGAGATGTGTTGAACGTTACATGGAAGCTACTGCAATCATAAGTCGTTCTCTTTTCACTCAACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042719 GO:0042886 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072321 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098798 GO:1990351 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

87

Amino Acids

9.41

Weight (kDa)

5.34

Isoelectric Point (pI)

69.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	25 - 83	3.7e-20	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61570
fragaria_vesca	FvH4_5g07140 FvH4_5g07140 FvH4_5g10420
malus_domestica	MD06G1124200.v1.1
prunus_persica	Prupe.5G134800_v2.0.a1
pyrus_communis	pycom06g11460 pycom14g11610
rosa_chinensis	RchiOBHm_Chr7g0187811
rosa_multiflora	Rmu_sc0004483.1_g000039
rosa_roxburghii	Rroxscaffold_2G00082080 Rroxscaffold_3G00267050
rosa_rugosa	Rorug06G0484400
rosa_samantha	Rh7AG089600 Rh7BG091300 Rh7CG090400 Rh7DG092000
rosa_wichuraiana	Rw7G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	20
AclI	AACGTT	2 cut(s)	211, 259
AclWI	GGATC	1 cut(s)	169
AfiI	CCNNNNNNNGG	2 cut(s)	26, 29
AgsI	TTSAA	1 cut(s)	209
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	4 cut(s)	85, 95, 189, 224
AluI	AGCT	4 cut(s)	85, 95, 189, 224
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	1 cut(s)	169
BccI	CCATC	2 cut(s)	19, 58
BciT130I	CCWGG	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	110
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
Bme1390I	CCNGG	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 29
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	169
BseLI	CCNNNNNNNGG	2 cut(s)	26, 29
BseMII	CTCAG	1 cut(s)	95
BslI	CCNNNNNNNGG	2 cut(s)	26, 29
BsmAI	GTCTC	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	161
BspACI	CCGC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	94
BspPI	GGATC	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	1 cut(s)	161
Bst2UI	CCWGG	1 cut(s)	159
Bst6I	CTCTTC	2 cut(s)	19, 99
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	81
BstKTI	GATC	1 cut(s)	164
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	1 cut(s)	161
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	87
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	6 cut(s)	85, 95, 157, 168, 189, 224
CviKI_1	RGCY	6 cut(s)	85, 95, 157, 168, 189, 224
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	1 cut(s)	163
DpnII	GATC	1 cut(s)	161
Eam1104I	CTCTTC	2 cut(s)	19, 99
EarI	CTCTTC	2 cut(s)	19, 99
EcoRII	CCWGG	1 cut(s)	157
FaeI	CATG	1 cut(s)	220
FaiI	YATR	3 cut(s)	10, 218, 236
FatI	CATG	1 cut(s)	216
Fnu4HI	GCNGC	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	20
Hin1II	CATG	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	3 cut(s)	5, 68, 79
Hpy188III	TCNNGA	3 cut(s)	76, 115, 198
HpyCH4IV	ACGT	2 cut(s)	211, 259
HpyCH4V	TGCA	1 cut(s)	230
HpyF3I	CTNAG	1 cut(s)	81
HpySE526I	ACGT	2 cut(s)	211, 259
Hsp92II	CATG	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	161
LpnPI	CCDG	3 cut(s)	21, 144, 171
MaeII	ACGT	2 cut(s)	211, 259
MaeIII	GTNAC	2 cut(s)	148, 212
MalI	GATC	1 cut(s)	163
MboI	GATC	1 cut(s)	161
MboII	GAAGA	2 cut(s)	6, 116
MlyI	GAGTC	2 cut(s)	73, 77
MnlI	CCTC	3 cut(s)	23, 117, 179
MseI	TTAA	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
NdeII	GATC	1 cut(s)	161
NlaIII	CATG	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	1 cut(s)	21
PleI	GAGTC	2 cut(s)	73, 76
PpsI	GAGTC	2 cut(s)	73, 76
Psp1406I	AACGTT	2 cut(s)	211, 259
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	1 cut(s)	161
SchI	GAGTC	2 cut(s)	73, 77
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	8 cut(s)	34, 40, 87, 97, 191, 214, 226, 262
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
SsiI	CCGC	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	157
TaiI	ACGT	2 cut(s)	214, 262
TaqI	TCGA	2 cut(s)	114, 197
TaqII	GACCGA	1 cut(s)	61
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.