Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0013402

Physical Location & Seq

Genomic Coordinates Forward (+)

5937128 .. 5941273

Gene Structure 4146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGATTTTTCAGCGCCATCAAGCGGGTCTTCATCAACCCAATTCAACCCTGACCAGTTCAAGAGCCAGCTTCAGTCCCAACTCGCTCAGGCTTATGCCGAGGAGTTCCTTGAGACCTTGAGGACTAAGTGCTTTGACAAGTGCGTCACAAAACCAGGATCAAGCCTAAGTGGGGGTGAGAGCAGCTGCATCTCTAGATGCATGGATCGCTATGTTGAGGCCACCGGCATCATCAGTAAAGCTCTCTTTAGTGCAGCAGGCCAGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042719 GO:0042886 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072321 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098798 GO:1990351 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

90

Amino Acids

9.6

Weight (kDa)

6.15

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	23 - 82	7.9e-20	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61570
fragaria_vesca	FvH4_5g07140 FvH4_5g07140 FvH4_5g10420
malus_domestica	MD06G1124200.v1.1
prunus_persica	Prupe.5G134800_v2.0.a1
pyrus_communis	pycom06g11460 pycom14g11610
rosa_chinensis	RchiOBHm_Chr7g0187811
rosa_multiflora	Rmu_sc0004483.1_g000039
rosa_roxburghii	Rroxscaffold_2G00082080 Rroxscaffold_3G00267050
rosa_rugosa	Rorug06G0484400
rosa_samantha	Rh7AG089600 Rh7BG091300 Rh7CG090400 Rh7DG092000
rosa_wichuraiana	Rw7G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	143
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	2 cut(s)	166, 213
AcuI	CTGAAG	1 cut(s)	56
AfeI	AGCGCT	1 cut(s)	266
AfiI	CCNNNNNNNGG	2 cut(s)	23, 172
AgsI	TTSAA	2 cut(s)	46, 61
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	3 cut(s)	70, 186, 242
AluI	AGCT	3 cut(s)	70, 186, 242
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	2 cut(s)	166, 213
Aor51HI	AGCGCT	1 cut(s)	266
AoxI	GGCC	2 cut(s)	219, 259
ApeKI	GCWGC	3 cut(s)	183, 186, 254
AspLEI	GCGC	2 cut(s)	16, 267
AsuHPI	GGTGA	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	21
BbvI	GCAGC	3 cut(s)	173, 195, 266
BccI	CCATC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	1 cut(s)	195
BfoI	RGCGCY	2 cut(s)	17, 268
BisI	GCNGC	3 cut(s)	184, 187, 255
BlsI	GCNGC	3 cut(s)	185, 188, 256
Bme1390I	CCNGG	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	3 cut(s)	188, 198, 237
BpiI	GAAGAC	1 cut(s)	21
Bpu10I	CCTNAGC	1 cut(s)	87
BpuEI	CTTGAG	2 cut(s)	131, 139
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 172
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	99
BseLI	CCNNNNNNNGG	2 cut(s)	23, 172
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	1 cut(s)	55
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	3 cut(s)	173, 195, 266
BshFI	GGCC	2 cut(s)	221, 261
BsiSI	CCGG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	2 cut(s)	23, 172
BsmAI	GTCTC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	221, 261
Bso31I	GGTCTC	1 cut(s)	107
Bsp143I	GATC	2 cut(s)	158, 205
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	2 cut(s)	221, 261
BspCNI	CTCAG	1 cut(s)	100
BspPI	GGATC	2 cut(s)	166, 213
BspTNI	GGTCTC	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	55
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	2 cut(s)	158, 205
Bst2UI	CCWGG	1 cut(s)	156
BstC8I	GCNNGC	3 cut(s)	68, 259, 263
BstDEI	CTNAG	3 cut(s)	87, 126, 167
BstH2I	RGCGCY	2 cut(s)	17, 268
BstHHI	GCGC	2 cut(s)	16, 267
BstKTI	GATC	2 cut(s)	161, 208
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	2 cut(s)	158, 205
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstV1I	GCAGC	3 cut(s)	173, 195, 266
BstV2I	GAAGAC	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	221, 261
Cac8I	GCNNGC	3 cut(s)	68, 259, 263
CfoI	GCGC	2 cut(s)	16, 267
Cfr10I	RCCGGY	1 cut(s)	224
CseI	GACGC	1 cut(s)	133
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	8 cut(s)	66, 70, 92, 165, 186, 221, 242, 261
CviKI_1	RGCY	8 cut(s)	66, 70, 92, 165, 186, 221, 242, 261
DdeI	CTNAG	3 cut(s)	87, 126, 167
DpnI	GATC	2 cut(s)	160, 207
DpnII	GATC	2 cut(s)	158, 205
DrdI	GACNNNNNNGTC	1 cut(s)	143
DseDI	GACNNNNNNGTC	1 cut(s)	143
Eco31I	GGTCTC	1 cut(s)	107
Eco47III	AGCGCT	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	154
EcoT22I	ATGCAT	1 cut(s)	203
FaeI	CATG	1 cut(s)	205
FaiI	YATR	3 cut(s)	96, 203, 213
FalI	AAGNNNNNCTT	2 cut(s)	13, 45
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	1 cut(s)	201
FauI	CCCGC	1 cut(s)	17
Fnu4HI	GCNGC	3 cut(s)	184, 187, 255
Fsp4HI	GCNGC	3 cut(s)	184, 187, 255
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	2 cut(s)	15, 266
GluI	GCNGC	3 cut(s)	184, 187, 255
HaeII	RGCGCY	2 cut(s)	17, 268
HaeIII	GGCC	2 cut(s)	221, 261
HapII	CCGG	1 cut(s)	225
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	2 cut(s)	16, 267
Hin1II	CATG	1 cut(s)	205
Hin6I	GCGC	2 cut(s)	14, 265
HinP1I	GCGC	2 cut(s)	14, 265
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	1 cut(s)	188
Hpy188III	TCNNGA	2 cut(s)	61, 195
HpyCH4V	TGCA	3 cut(s)	189, 201, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpyF3I	CTNAG	3 cut(s)	87, 126, 167
Hsp92II	CATG	1 cut(s)	205
HspAI	GCGC	2 cut(s)	14, 265
Kzo9I	GATC	2 cut(s)	158, 205
LpnPI	CCDG	8 cut(s)	63, 68, 74, 80, 141, 168, 238, 243
Lsp1109I	GCAGC	3 cut(s)	173, 195, 266
LweI	GCATC	3 cut(s)	188, 198, 237
MaeI	CTAG	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	2 cut(s)	160, 207
MboI	GATC	2 cut(s)	158, 205
MboII	GAAGA	1 cut(s)	21
MluCI	AATT	1 cut(s)	41
MnlI	CCTC	3 cut(s)	94, 114, 211
Mph1103I	ATGCAT	1 cut(s)	203
MspA1I	CMGCKG	1 cut(s)	186
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	207
NdeII	GATC	2 cut(s)	158, 205
NlaIII	CATG	1 cut(s)	205
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	145
NsiI	ATGCAT	1 cut(s)	203
PkrI	GCNGC	3 cut(s)	185, 188, 256
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PvuII	CAGCTG	1 cut(s)	186
SatI	GCNGC	3 cut(s)	184, 187, 255
Sau3AI	GATC	2 cut(s)	158, 205
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	4 cut(s)	72, 119, 188, 244
SfaNI	GCATC	3 cut(s)	188, 198, 237
SmlI	CTYRAG	2 cut(s)	110, 118
SmoI	CTYRAG	2 cut(s)	110, 118
Sse9I	AATT	1 cut(s)	41
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	154
TasI	AATT	1 cut(s)	41
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	3 cut(s)	183, 186, 254
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	21
XbaI	TCTAGA	1 cut(s)	194
XspI	CTAG	1 cut(s)	195
Zsp2I	ATGCAT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.