Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0013402

Physical Location & Seq

Genomic Coordinates Reverse (-)

12828131 .. 12829956

Gene Structure 1826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G134800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGATTCGTTTTCATCCCCATCAAGTGGATCTTCTGCAACCCAATTCAACCCTGACGCTTTCAAGGACCAGCTTAAGAACCAACTTGCTCAGGCTTATGCCGAGGAGTTCTTGGAGACCCTGAGGTCAAAGTGCTTCGACAAGTGCATCACGAAACCAGGATCCAGCCTAGGTGGGAGTGAGAGTAGCTGCATCTCTAGATGTATGGATCGCTATATTGAGGCCACTGGCATCATCAGTAAAGCTCTCTTTAGTGCATCCCCACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042719 GO:0042886 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072321 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098798 GO:1990351 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

90

Amino Acids

9.6

Weight (kDa)

5.24

Isoelectric Point (pI)

60.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61570
fragaria_vesca	FvH4_5g07140 FvH4_5g07140 FvH4_5g10420
malus_domestica	MD06G1124200.v1.1
prunus_persica	Prupe.5G134800_v2.0.a1
pyrus_communis	pycom06g11460 pycom14g11610
rosa_chinensis	RchiOBHm_Chr7g0187811
rosa_multiflora	Rmu_sc0004483.1_g000039
rosa_roxburghii	Rroxscaffold_2G00082080 Rroxscaffold_3G00267050
rosa_rugosa	Rorug06G0484400
rosa_samantha	Rh7AG089600 Rh7BG091300 Rh7CG090400 Rh7DG092000
rosa_wichuraiana	Rw7G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	124
AccB7I	CCANNNNNTGG	1 cut(s)	26
AclWI	GGATC	4 cut(s)	37, 156, 169, 216
AfiI	CCNNNNNNNGG	1 cut(s)	26
AflII	CTTAAG	1 cut(s)	74
AgsI	TTSAA	2 cut(s)	49, 64
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	3 cut(s)	73, 189, 245
AluI	AGCT	3 cut(s)	73, 189, 245
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	4 cut(s)	37, 156, 169, 216
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	1 cut(s)	189
AspA2I	CCTAGG	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	67
AvrII	CCTAGG	1 cut(s)	169
AxyI	CCTNAGG	1 cut(s)	122
BamHI	GGATCC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	2 cut(s)	170, 198
BfrI	CTTAAG	1 cut(s)	74
BisI	GCNGC	1 cut(s)	190
BlnI	CCTAGG	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	191
Bme1390I	CCNGG	1 cut(s)	159
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	159
BmsI	GCATC	4 cut(s)	156, 201, 240, 266
Bpu10I	CCTNAGC	1 cut(s)	90
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	102, 169
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	232
Bse21I	CCTNAGG	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	102, 169
BseGI	GGATG	2 cut(s)	14, 257
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMII	CTCAG	2 cut(s)	104, 113
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	176
BshFI	GGCC	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	224
Bso31I	GGTCTC	1 cut(s)	110
Bsp143I	GATC	3 cut(s)	29, 161, 208
BspANI	GGCC	1 cut(s)	224
BspCNI	CTCAG	2 cut(s)	103, 114
BspLI	GGNNCC	1 cut(s)	163
BspPI	GGATC	4 cut(s)	37, 156, 169, 216
BspTI	CTTAAG	1 cut(s)	74
BspTNI	GGTCTC	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	2 cut(s)	102, 169
BssMI	GATC	3 cut(s)	29, 161, 208
BssT1I	CCWWGG	1 cut(s)	169
Bst2UI	CCWGG	1 cut(s)	159
BstAFI	CTTAAG	1 cut(s)	74
BstDEI	CTNAG	2 cut(s)	90, 122
BstF5I	GGATG	2 cut(s)	14, 257
BstKTI	GATC	3 cut(s)	32, 164, 211
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	3 cut(s)	29, 161, 208
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	176
BstX2I	RGATCY	2 cut(s)	29, 161
BstYI	RGATCY	2 cut(s)	29, 161
Bsu36I	CCTNAGG	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	224
BtsCI	GGATG	2 cut(s)	14, 257
BtsIMutI	CAGTG	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	65
CviJI	RGCY	6 cut(s)	73, 95, 168, 189, 224, 245
CviKI_1	RGCY	6 cut(s)	73, 95, 168, 189, 224, 245
DdeI	CTNAG	2 cut(s)	90, 122
DpnI	GATC	3 cut(s)	31, 163, 210
DpnII	GATC	3 cut(s)	29, 161, 208
DrdI	GACNNNNNNGTC	1 cut(s)	124
DseDI	GACNNNNNNGTC	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	169
Eco31I	GGTCTC	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	67
Eco81I	CCTNAGG	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	169
FaiI	YATR	3 cut(s)	99, 206, 216
FalI	AAGNNNNNCTT	2 cut(s)	16, 48
Fnu4HI	GCNGC	1 cut(s)	190
FokI	GGATG	1 cut(s)	244
Fsp4HI	GCNGC	1 cut(s)	190
FspBI	CTAG	2 cut(s)	170, 198
GluI	GCNGC	1 cut(s)	190
HaeIII	GGCC	1 cut(s)	224
HgaI	GACGC	1 cut(s)	65
HinfI	GANTC	1 cut(s)	5
Hpy188III	TCNNGA	2 cut(s)	151, 198
HpyCH4V	TGCA	4 cut(s)	38, 147, 192, 257
HpyF3I	CTNAG	2 cut(s)	90, 122
Kzo9I	GATC	3 cut(s)	29, 161, 208
LpnPI	CCDG	8 cut(s)	66, 77, 83, 134, 144, 171, 178, 213
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	4 cut(s)	156, 201, 240, 266
MaeI	CTAG	2 cut(s)	170, 198
MalI	GATC	3 cut(s)	31, 163, 210
MboI	GATC	3 cut(s)	29, 161, 208
MboII	GAAGA	1 cut(s)	24
MflI	RGATCY	2 cut(s)	29, 161
MluCI	AATT	1 cut(s)	44
MnlI	CCTC	3 cut(s)	97, 117, 214
MseI	TTAA	1 cut(s)	75
MspCI	CTTAAG	1 cut(s)	74
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
NdeII	GATC	3 cut(s)	29, 161, 208
NlaIV	GGNNCC	1 cut(s)	163
NmeAIII	GCCGAG	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	5
PflMI	CCANNNNNTGG	1 cut(s)	26
PkrI	GCNGC	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	67
PsuI	RGATCY	2 cut(s)	29, 161
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	1 cut(s)	190
Sau3AI	GATC	3 cut(s)	29, 161, 208
Sau96I	GGNCC	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	5 cut(s)	75, 128, 175, 191, 247
SfaNI	GCATC	4 cut(s)	156, 201, 240, 266
SinI	GGWCC	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	1 cut(s)	44
SspMI	CTAG	2 cut(s)	170, 198
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	1 cut(s)	169
TaqI	TCGA	1 cut(s)	138
TasI	AATT	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	1 cut(s)	189
TspRI	CASTG	1 cut(s)	232
Van91I	CCANNNNNTGG	1 cut(s)	26
Vha464I	CTTAAG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	67
XbaI	TCTAGA	1 cut(s)	197
XmaJI	CCTAGG	1 cut(s)	169
XspI	CTAG	2 cut(s)	170, 198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.