Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0013402

Physical Location & Seq

Genomic Coordinates Forward (+)

4193413 .. 4198027

Gene Structure 4615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g07140.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGAATTATCAAGCGGGTCTTCATCAATCCAATTCAACCCTGACCAGTTCAGGAGCGAGCTTCAGTCCCAAATCGCTGAGGCTTATTACCAGGAGTTCCTTGAGACCTTAAGGAAGAAGTGCTTTGAAAAGTGCATCACAAAACCAGGATCAAGCCTAAGTGGGGGTGAGAGCAGCTGCATCACTAAATGTATCGATCTCTATGTCGAGGCTACCACCATCATCACTAAAGAGCTCGTTAGTGCATCCCGGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001650 GO:0003008 GO:0003674 GO:0005215 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005758 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0007600 GO:0007605 GO:0008104 GO:0008150 GO:0008270 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0022804 GO:0022857 GO:0022884 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042719 GO:0042886 GO:0042887 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044452 GO:0044455 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050877 GO:0050954 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072321 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098796 GO:0098798 GO:0098800 GO:1904680 GO:1990351 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

86

Amino Acids

9.45

Weight (kDa)

4.91

Isoelectric Point (pI)

50.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	21 - 79	1e-16	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Orthologous Genes (Group: OG0013402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61570
fragaria_vesca	FvH4_5g07140 FvH4_5g07140 FvH4_5g10420
malus_domestica	MD06G1124200.v1.1
prunus_persica	Prupe.5G134800_v2.0.a1
pyrus_communis	pycom06g11460 pycom14g11610
rosa_chinensis	RchiOBHm_Chr7g0187811
rosa_multiflora	Rmu_sc0004483.1_g000039
rosa_roxburghii	Rroxscaffold_2G00082080 Rroxscaffold_3G00267050
rosa_rugosa	Rorug06G0484400
rosa_samantha	Rh7AG089600 Rh7BG091300 Rh7CG090400 Rh7DG092000
rosa_wichuraiana	Rw7G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	15
AclWI	GGATC	1 cut(s)	157
AcuI	CTGAAG	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	163
AflII	CTTAAG	1 cut(s)	109
AgsI	TTSAA	2 cut(s)	37, 128
AjnI	CCWGG	2 cut(s)	90, 145
AluBI	AGCT	3 cut(s)	61, 177, 235
AluI	AGCT	3 cut(s)	61, 177, 235
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	157
Ama87I	CYCGRG	1 cut(s)	249
ApeKI	GCWGC	2 cut(s)	174, 177
AsuC2I	CCSGG	2 cut(s)	250, 251
AsuHPI	GGTGA	1 cut(s)	179
AvaI	CYCGRG	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	237
BbvCI	CCTCAGC	1 cut(s)	78
BbvI	GCAGC	2 cut(s)	164, 186
BccI	CCATC	1 cut(s)	227
BciT130I	CCWGG	2 cut(s)	92, 147
BcnI	CCSGG	2 cut(s)	250, 251
BcoDI	GTCTC	1 cut(s)	98
BfrI	CTTAAG	1 cut(s)	109
BisI	GCNGC	2 cut(s)	175, 178
BlsI	GCNGC	2 cut(s)	176, 179
Bme1390I	CCNGG	4 cut(s)	92, 147, 250, 251
BmeT110I	CYCGRG	1 cut(s)	249
BmrFI	CCNGG	4 cut(s)	92, 147, 250, 251
BmsI	GCATC	3 cut(s)	144, 189, 254
BpiI	GAAGAC	1 cut(s)	12
Bpu10I	CCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	2 cut(s)	250, 251
Bsa29I	ATCGAT	1 cut(s)	195
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse1I	ACTGG	1 cut(s)	46
BseBI	CCWGG	2 cut(s)	92, 147
BseCI	ATCGAT	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	1 cut(s)	245
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	46
BseXI	GCAGC	2 cut(s)	164, 186
BshVI	ATCGAT	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	250
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	52
Bso31I	GGTCTC	1 cut(s)	98
BsoBI	CYCGRG	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	149, 196
BspACI	CCGC	1 cut(s)	15
BspCNI	CTCAG	1 cut(s)	70
BspDI	ATCGAT	1 cut(s)	195
BspPI	GGATC	1 cut(s)	157
BspTI	CTTAAG	1 cut(s)	109
BspTNI	GGTCTC	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	2 cut(s)	149, 196
Bst2UI	CCWGG	2 cut(s)	92, 147
BstAFI	CTTAAG	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	2 cut(s)	78, 158
BstF5I	GGATG	1 cut(s)	245
BstKTI	GATC	2 cut(s)	152, 199
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	2 cut(s)	149, 196
BstNI	CCWGG	2 cut(s)	92, 147
BstSCI	CCNGG	4 cut(s)	90, 145, 248, 249
BstV1I	GCAGC	2 cut(s)	164, 186
BstV2I	GAAGAC	1 cut(s)	12
Bsu15I	ATCGAT	1 cut(s)	195
BsuTUI	ATCGAT	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	245
Cac8I	GCNNGC	1 cut(s)	59
Cfr9I	CCCGGG	1 cut(s)	249
ClaI	ATCGAT	1 cut(s)	195
CviJI	RGCY	6 cut(s)	61, 83, 156, 177, 212, 235
CviKI_1	RGCY	6 cut(s)	61, 83, 156, 177, 212, 235
DdeI	CTNAG	2 cut(s)	78, 158
DpnI	GATC	2 cut(s)	151, 198
DpnII	GATC	2 cut(s)	149, 196
Ecl136II	GAGCTC	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	98
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	249
EcoICRI	GAGCTC	1 cut(s)	235
EcoRII	CCWGG	2 cut(s)	90, 145
EcoT38I	GRGCYC	1 cut(s)	237
FaiI	YATR	1 cut(s)	204
FalI	AAGNNNNNCTT	3 cut(s)	36, 107, 139
FaqI	GGGAC	1 cut(s)	52
FauI	CCCGC	1 cut(s)	8
Fnu4HI	GCNGC	2 cut(s)	175, 178
FokI	GGATG	1 cut(s)	232
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	2 cut(s)	175, 178
GluI	GCNGC	2 cut(s)	175, 178
HapII	CCGG	1 cut(s)	250
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	1 cut(s)	179
Hpy188III	TCNNGA	1 cut(s)	52
HpyCH4V	TGCA	3 cut(s)	135, 180, 245
HpyF3I	CTNAG	2 cut(s)	78, 158
Kzo9I	GATC	2 cut(s)	149, 196
LmnI	GCTCC	1 cut(s)	54
LpnPI	CCDG	7 cut(s)	37, 54, 59, 77, 104, 132, 159
Lsp1109I	GCAGC	2 cut(s)	164, 186
LweI	GCATC	3 cut(s)	144, 189, 254
MalI	GATC	2 cut(s)	151, 198
MboI	GATC	2 cut(s)	149, 196
MboII	GAAGA	2 cut(s)	12, 127
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	2 cut(s)	5, 32
MnlI	CCTC	2 cut(s)	73, 202
MseI	TTAA	1 cut(s)	110
MspA1I	CMGCKG	1 cut(s)	177
MspCI	CTTAAG	1 cut(s)	109
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	4 cut(s)	92, 147, 250, 251
MvaI	CCWGG	2 cut(s)	92, 147
NciI	CCSGG	2 cut(s)	250, 251
NdeII	GATC	2 cut(s)	149, 196
PkrI	GCNGC	2 cut(s)	176, 179
Psp124BI	GAGCTC	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	90, 145
PspGI	CCWGG	2 cut(s)	90, 145
PvuII	CAGCTG	1 cut(s)	177
SacI	GAGCTC	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	2 cut(s)	175, 178
Sau3AI	GATC	2 cut(s)	149, 196
ScrFI	CCNGG	4 cut(s)	92, 147, 250, 251
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	4 cut(s)	63, 110, 179, 237
SfaNI	GCATC	3 cut(s)	144, 189, 254
SmaI	CCCGGG	1 cut(s)	251
SmlI	CTYRAG	2 cut(s)	101, 109
SmoI	CTYRAG	2 cut(s)	101, 109
Sse9I	AATT	2 cut(s)	5, 32
SsiI	CCGC	1 cut(s)	15
SstI	GAGCTC	1 cut(s)	237
StyD4I	CCNGG	4 cut(s)	90, 145, 248, 249
TaqI	TCGA	2 cut(s)	195, 207
TasI	AATT	2 cut(s)	5, 32
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TseI	GCWGC	2 cut(s)	174, 177
TspDTI	ATGAA	1 cut(s)	12
TspMI	CCCGGG	1 cut(s)	249
Vha464I	CTTAAG	1 cut(s)	109
XmaI	CCCGGG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.