Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0013402

Physical Location & Seq

Genomic Coordinates Reverse (-)

16752163 .. 16753960

Gene Structure 1798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g11460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGACTCGTTTTCATCACCGTCAGGCGGCTCTTCAGGCCAATTCAACCCTGACGCCTTTAAGGACCAGCTTAAGAACCAGCTTGCTCAGGCTTATGCCGAGGAGTTCCTTGAGACTCTGAGGTCAAAATGCTTTGATAAGTGCATCACAAAACCGGGAACAAGCATAGGTGGGAGTGAGAGTAGCTGCATCTCTAGATGTATGGATCGCTACATTGAGGCCACTGGCATCATCAGTAAAGCTCTCTTTAGTGCATCCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042719 GO:0042886 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072321 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098798 GO:1990351 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

88

Amino Acids

9.37

Weight (kDa)

5.24

Isoelectric Point (pI)

53.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	23 - 82	7e-19	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61570
fragaria_vesca	FvH4_5g07140 FvH4_5g07140 FvH4_5g10420
malus_domestica	MD06G1124200.v1.1
prunus_persica	Prupe.5G134800_v2.0.a1
pyrus_communis	pycom06g11460 pycom14g11610
rosa_chinensis	RchiOBHm_Chr7g0187811
rosa_multiflora	Rmu_sc0004483.1_g000039
rosa_roxburghii	Rroxscaffold_2G00082080 Rroxscaffold_3G00267050
rosa_rugosa	Rorug06G0484400
rosa_samantha	Rh7AG089600 Rh7BG091300 Rh7CG090400 Rh7DG092000
rosa_wichuraiana	Rw7G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	121
AciI	CCGC	1 cut(s)	27
AclWI	GGATC	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	18
AcyI	GRCGYC	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	26
AflII	CTTAAG	1 cut(s)	71
AgsI	TTSAA	1 cut(s)	46
AluBI	AGCT	4 cut(s)	70, 82, 186, 242
AluI	AGCT	4 cut(s)	70, 82, 186, 242
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	213
AoxI	GGCC	2 cut(s)	37, 219
ApeKI	GCWGC	1 cut(s)	186
AspS9I	GGNCC	1 cut(s)	64
AsuC2I	CCSGG	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	9
AvaII	GGWCC	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	173
BcnI	CCSGG	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	1 cut(s)	195
BfrI	CTTAAG	1 cut(s)	71
BisI	GCNGC	2 cut(s)	28, 187
BlsI	GCNGC	2 cut(s)	29, 188
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	3 cut(s)	153, 198, 237
Bpu10I	CCTNAGC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	99
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	229
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	254
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMII	CTCAG	2 cut(s)	101, 110
BseNI	ACTGG	1 cut(s)	229
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	173
BshFI	GGCC	2 cut(s)	39, 221
BsiSI	CCGG	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	107
BsnI	GGCC	2 cut(s)	39, 221
Bsp143I	GATC	1 cut(s)	205
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	2 cut(s)	39, 221
BspCNI	CTCAG	2 cut(s)	100, 111
BspPI	GGATC	1 cut(s)	213
BspQI	GCTCTTC	1 cut(s)	37
BspTI	CTTAAG	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	1 cut(s)	205
BssNI	GRCGYC	1 cut(s)	54
Bst4CI	ACNGT	1 cut(s)	21
Bst6I	CTCTTC	1 cut(s)	37
BstACI	GRCGYC	1 cut(s)	54
BstAFI	CTTAAG	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	2 cut(s)	87, 119
BstF5I	GGATG	1 cut(s)	254
BstKTI	GATC	1 cut(s)	208
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	173
BsuRI	GGCC	2 cut(s)	39, 221
BtsCI	GGATG	1 cut(s)	254
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	1 cut(s)	62
CviJI	RGCY	8 cut(s)	30, 39, 70, 82, 92, 186, 221, 242
CviKI_1	RGCY	8 cut(s)	30, 39, 70, 82, 92, 186, 221, 242
DdeI	CTNAG	2 cut(s)	87, 119
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
DrdI	GACNNNNNNGTC	1 cut(s)	121
DseDI	GACNNNNNNGTC	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	18
FaiI	YATR	3 cut(s)	96, 167, 203
Fnu4HI	GCNGC	2 cut(s)	28, 187
FokI	GGATG	1 cut(s)	241
Fsp4HI	GCNGC	2 cut(s)	28, 187
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	2 cut(s)	28, 187
HaeIII	GGCC	2 cut(s)	39, 221
HapII	CCGG	1 cut(s)	155
HgaI	GACGC	1 cut(s)	62
Hin1I	GRCGYC	1 cut(s)	54
HinfI	GANTC	2 cut(s)	5, 115
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	1 cut(s)	9
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	1 cut(s)	195
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4V	TGCA	3 cut(s)	144, 189, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
HpyF3I	CTNAG	2 cut(s)	87, 119
Hsp92I	GRCGYC	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	205
LguI	GCTCTTC	1 cut(s)	37
LpnPI	CCDG	8 cut(s)	9, 21, 63, 74, 80, 92, 168, 210
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	3 cut(s)	153, 198, 237
MaeI	CTAG	1 cut(s)	195
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	1 cut(s)	24
MluCI	AATT	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	109
MnlI	CCTC	3 cut(s)	94, 114, 211
MseI	TTAA	2 cut(s)	60, 72
MslI	CAYNNNNRTG	1 cut(s)	259
MspCI	CTTAAG	1 cut(s)	71
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	36
NciI	CCSGG	1 cut(s)	156
NdeII	GATC	1 cut(s)	205
NmeAIII	GCCGAG	1 cut(s)	124
PciSI	GCTCTTC	1 cut(s)	37
PkrI	GCNGC	2 cut(s)	29, 188
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PspPI	GGNCC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	259
SapI	GCTCTTC	1 cut(s)	37
SaqAI	TTAA	2 cut(s)	60, 72
SatI	GCNGC	2 cut(s)	28, 187
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	6 cut(s)	72, 84, 125, 172, 188, 244
SfaNI	GCATC	3 cut(s)	153, 198, 237
SinI	GGWCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	259
SmlI	CTYRAG	2 cut(s)	71, 110
SmoI	CTYRAG	2 cut(s)	71, 110
Sse9I	AATT	1 cut(s)	41
SsiI	CCGC	1 cut(s)	27
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	154
TaaI	ACNGT	1 cut(s)	21
TasI	AATT	1 cut(s)	41
TauI	GCSGC	1 cut(s)	30
Tru1I	TTAA	2 cut(s)	60, 72
Tru9I	TTAA	2 cut(s)	60, 72
TscAI	CASTG	1 cut(s)	229
TseI	GCWGC	1 cut(s)	186
TspRI	CASTG	1 cut(s)	229
Vha464I	CTTAAG	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	64
XbaI	TCTAGA	1 cut(s)	194
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.