Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0013402

Physical Location & Seq

Genomic Coordinates Reverse (-)

14672520 .. 14674388

Gene Structure 1869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g11610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGACTCGTTTTCATCACCGTCAGGCGGATCTTCAGGCCAATTCAATCCTGACGCCTTCAAGGACCAGCTTAAGAACCAGCTTGCTCAGGCTTATGCCGAGGAGTTCCTTGAGACCATGAGGTCAAAGTGCTTTGACAAGTGCATCACAAAACCAGGAACAAGCATAAGTGGGAGTGAGAGTAGCTGCATCTCTAGATGTATGGATCGATCTACATTGAGGCCACTGGCATCATCAGTAAAGCTCTCTTTAGTGCATCCCATCAATGAAATTACGGGGTGTAAATTGCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042719 GO:0042886 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072321 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098798 GO:1990351 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

99

Amino Acids

10.6

Weight (kDa)

7.61

Isoelectric Point (pI)

49.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	23 - 70	1.3e-14	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61570
fragaria_vesca	FvH4_5g07140 FvH4_5g07140 FvH4_5g10420
malus_domestica	MD06G1124200.v1.1
prunus_persica	Prupe.5G134800_v2.0.a1
pyrus_communis	pycom06g11460 pycom14g11610
rosa_chinensis	RchiOBHm_Chr7g0187811
rosa_multiflora	Rmu_sc0004483.1_g000039
rosa_roxburghii	Rroxscaffold_2G00082080 Rroxscaffold_3G00267050
rosa_rugosa	Rorug06G0484400
rosa_samantha	Rh7AG089600 Rh7BG091300 Rh7CG090400 Rh7DG092000
rosa_wichuraiana	Rw7G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	121
AciI	CCGC	1 cut(s)	27
AclWI	GGATC	2 cut(s)	37, 213
AcuI	CTGAAG	1 cut(s)	18
AcyI	GRCGYC	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	26
AflII	CTTAAG	1 cut(s)	71
AgsI	TTSAA	2 cut(s)	46, 61
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	4 cut(s)	70, 82, 186, 244
AluI	AGCT	4 cut(s)	70, 82, 186, 244
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	2 cut(s)	37, 213
AoxI	GGCC	2 cut(s)	37, 221
ApeKI	GCWGC	1 cut(s)	186
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	9
AvaII	GGWCC	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	1 cut(s)	269
BciT130I	CCWGG	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	1 cut(s)	195
BfrI	CTTAAG	1 cut(s)	71
BisI	GCNGC	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	188
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	4 cut(s)	153, 198, 239, 265
Bpu10I	CCTNAGC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	131
Bsa29I	ATCGAT	1 cut(s)	208
BsaHI	GRCGYC	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	99
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	156
BseCI	ATCGAT	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	1 cut(s)	231
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	173
BshFI	GGCC	2 cut(s)	39, 223
BshVI	ATCGAT	1 cut(s)	208
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	107
BsnI	GGCC	2 cut(s)	39, 223
Bso31I	GGTCTC	1 cut(s)	107
Bsp143I	GATC	3 cut(s)	29, 205, 209
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	2 cut(s)	39, 223
BspCNI	CTCAG	1 cut(s)	100
BspDI	ATCGAT	1 cut(s)	208
BspPI	GGATC	2 cut(s)	37, 213
BspTI	CTTAAG	1 cut(s)	71
BspTNI	GGTCTC	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	3 cut(s)	29, 205, 209
BssNI	GRCGYC	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	21
BstACI	GRCGYC	1 cut(s)	54
BstAFI	CTTAAG	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	3 cut(s)	32, 208, 212
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	3 cut(s)	29, 205, 209
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
Bsu15I	ATCGAT	1 cut(s)	208
BsuRI	GGCC	2 cut(s)	39, 223
BsuTUI	ATCGAT	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	224
Cac8I	GCNNGC	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	64
ClaI	ATCGAT	1 cut(s)	208
CseI	GACGC	1 cut(s)	62
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	7 cut(s)	39, 70, 82, 92, 186, 223, 244
CviKI_1	RGCY	7 cut(s)	39, 70, 82, 92, 186, 223, 244
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	3 cut(s)	31, 207, 211
DpnII	GATC	3 cut(s)	29, 205, 209
DrdI	GACNNNNNNGTC	1 cut(s)	121
DseDI	GACNNNNNNGTC	1 cut(s)	121
EciI	GGCGGA	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	154
FaeI	CATG	1 cut(s)	121
FaiI	YATR	4 cut(s)	96, 119, 167, 203
FatI	CATG	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	187
FokI	GGATG	1 cut(s)	243
Fsp4HI	GCNGC	1 cut(s)	187
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	1 cut(s)	187
HaeIII	GGCC	2 cut(s)	39, 223
HgaI	GACGC	1 cut(s)	62
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	121
HinfI	GANTC	1 cut(s)	5
HphI	GGTGA	1 cut(s)	9
Hpy188III	TCNNGA	3 cut(s)	50, 195, 294
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4V	TGCA	3 cut(s)	144, 189, 256
HpyF3I	CTNAG	1 cut(s)	87
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	29, 205, 209
LpnPI	CCDG	9 cut(s)	9, 21, 63, 74, 80, 92, 141, 168, 212
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	4 cut(s)	153, 198, 239, 265
MaeI	CTAG	1 cut(s)	195
MalI	GATC	3 cut(s)	31, 207, 211
MboI	GATC	3 cut(s)	29, 205, 209
MboII	GAAGA	1 cut(s)	24
MflI	RGATCY	1 cut(s)	29
MluCI	AATT	3 cut(s)	41, 270, 284
MnlI	CCTC	3 cut(s)	94, 114, 213
MseI	TTAA	1 cut(s)	72
MspCI	CTTAAG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
NdeII	GATC	3 cut(s)	29, 205, 209
NlaIII	CATG	1 cut(s)	121
NmeAIII	GCCGAG	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	1 cut(s)	187
Sau3AI	GATC	3 cut(s)	29, 205, 209
Sau96I	GGNCC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	5 cut(s)	72, 84, 125, 188, 246
SfaNI	GCATC	4 cut(s)	153, 198, 239, 265
SinI	GGWCC	1 cut(s)	64
SmlI	CTYRAG	2 cut(s)	71, 110
SmoI	CTYRAG	2 cut(s)	71, 110
Sse9I	AATT	3 cut(s)	41, 270, 284
SsiI	CCGC	1 cut(s)	27
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	154
TaaI	ACNGT	1 cut(s)	21
TaqI	TCGA	1 cut(s)	208
TasI	AATT	3 cut(s)	41, 270, 284
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	1 cut(s)	231
TseI	GCWGC	1 cut(s)	186
TspDTI	ATGAA	1 cut(s)	282
TspRI	CASTG	1 cut(s)	231
Vha464I	CTTAAG	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	64
XbaI	TCTAGA	1 cut(s)	194
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.