Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0013402

Physical Location & Seq

Genomic Coordinates Reverse (-)

6780382 .. 6782966

Gene Structure 2585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG090400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGATTTTTCATCGCCATCAAGCGGATCTTCTTCAACCCAATTCAACCCTGACGCTTTCAAGAACCAGCTTCAGAACCAACTAGCTCAGGCTTATGCCGAAGAGTTCCTTGAGACCCTGAGGACGAAGTGCTTTGACAAGTGCATCACAAAACCCGGATCAAGCCTTAGTGGGGGTGAGAGTAGCTGCATCTCTAGATGTATGGATCGCTATGTTGAGGCCACCGGCATCATCAGTAAATCTCTATTCAGTGCCACTCAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042719 GO:0042886 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072321 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098798 GO:1990351 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

88

Amino Acids

9.6

Weight (kDa)

5.68

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	22 - 82	2.9e-20	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61570
fragaria_vesca	FvH4_5g07140 FvH4_5g07140 FvH4_5g10420
malus_domestica	MD06G1124200.v1.1
prunus_persica	Prupe.5G134800_v2.0.a1
pyrus_communis	pycom06g11460 pycom14g11610
rosa_chinensis	RchiOBHm_Chr7g0187811
rosa_multiflora	Rmu_sc0004483.1_g000039
rosa_roxburghii	Rroxscaffold_2G00082080 Rroxscaffold_3G00267050
rosa_rugosa	Rorug06G0484400
rosa_samantha	Rh7AG089600 Rh7BG091300 Rh7CG090400 Rh7DG092000
rosa_wichuraiana	Rw7G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	3 cut(s)	34, 166, 213
AcuI	CTGAAG	1 cut(s)	56
AfiI	CCNNNNNNNGG	2 cut(s)	23, 172
AgsI	TTSAA	3 cut(s)	36, 46, 61
AluBI	AGCT	3 cut(s)	70, 86, 186
AluI	AGCT	3 cut(s)	70, 86, 186
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	3 cut(s)	34, 166, 213
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	186
AsuC2I	CCSGG	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	188
AxyI	CCTNAGG	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	1 cut(s)	25
BcnI	CCSGG	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	2 cut(s)	83, 195
BisI	GCNGC	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	188
Bme1390I	CCNGG	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	3 cut(s)	153, 198, 237
Bpu10I	CCTNAGC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 172
Bse118I	RCCGGY	1 cut(s)	224
Bse21I	CCTNAGG	1 cut(s)	119
BseLI	CCNNNNNNNGG	2 cut(s)	23, 172
BseMII	CTCAG	2 cut(s)	101, 110
BseXI	GCAGC	1 cut(s)	173
BshFI	GGCC	1 cut(s)	221
BsiSI	CCGG	2 cut(s)	156, 225
BslI	CCNNNNNNNGG	2 cut(s)	23, 172
BsmAI	GTCTC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	221
Bso31I	GGTCTC	1 cut(s)	107
Bsp143I	GATC	3 cut(s)	26, 158, 205
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	221
BspCNI	CTCAG	2 cut(s)	100, 111
BspPI	GGATC	3 cut(s)	34, 166, 213
BspTNI	GGTCTC	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	224
BssAI	RCCGGY	1 cut(s)	224
BssMI	GATC	3 cut(s)	26, 158, 205
Bst6I	CTCTTC	1 cut(s)	96
BstDEI	CTNAG	4 cut(s)	87, 119, 167, 258
BstKTI	GATC	3 cut(s)	29, 161, 208
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	3 cut(s)	26, 158, 205
BstSCI	CCNGG	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
Bsu36I	CCTNAGG	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	221
BtsIMutI	CAGTG	1 cut(s)	256
Cfr10I	RCCGGY	1 cut(s)	224
CseI	GACGC	1 cut(s)	62
CviJI	RGCY	6 cut(s)	70, 86, 92, 165, 186, 221
CviKI_1	RGCY	6 cut(s)	70, 86, 92, 165, 186, 221
DdeI	CTNAG	4 cut(s)	87, 119, 167, 258
DpnI	GATC	3 cut(s)	28, 160, 207
DpnII	GATC	3 cut(s)	26, 158, 205
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	56
Eco81I	CCTNAGG	1 cut(s)	119
FaiI	YATR	3 cut(s)	96, 203, 213
FalI	AAGNNNNNCTT	4 cut(s)	13, 45, 93, 125
Fnu4HI	GCNGC	1 cut(s)	187
Fsp4HI	GCNGC	1 cut(s)	187
FspBI	CTAG	2 cut(s)	83, 195
GluI	GCNGC	1 cut(s)	187
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	2 cut(s)	156, 225
HgaI	GACGC	1 cut(s)	62
HpaII	CCGG	2 cut(s)	156, 225
HphI	GGTGA	1 cut(s)	188
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	2 cut(s)	61, 195
HpyCH4V	TGCA	2 cut(s)	144, 189
HpyF3I	CTNAG	4 cut(s)	87, 119, 167, 258
Kzo9I	GATC	3 cut(s)	26, 158, 205
LpnPI	CCDG	6 cut(s)	63, 74, 80, 131, 169, 238
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	3 cut(s)	153, 198, 237
MaeI	CTAG	2 cut(s)	83, 195
MalI	GATC	3 cut(s)	28, 160, 207
MboI	GATC	3 cut(s)	26, 158, 205
MboII	GAAGA	3 cut(s)	21, 24, 113
MflI	RGATCY	1 cut(s)	26
MluCI	AATT	1 cut(s)	41
MnlI	CCTC	2 cut(s)	114, 211
MspI	CCGG	2 cut(s)	156, 225
MspR9I	CCNGG	1 cut(s)	156
NciI	CCSGG	1 cut(s)	156
NdeII	GATC	3 cut(s)	26, 158, 205
PkrI	GCNGC	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	26
SatI	GCNGC	1 cut(s)	187
Sau3AI	GATC	3 cut(s)	26, 158, 205
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	3 cut(s)	72, 88, 188
SfaNI	GCATC	3 cut(s)	153, 198, 237
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	41
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	2 cut(s)	83, 195
StyD4I	CCNGG	1 cut(s)	154
TasI	AATT	1 cut(s)	41
TscAI	CASTG	1 cut(s)	256
TseI	GCWGC	1 cut(s)	186
TspRI	CASTG	1 cut(s)	256
XbaI	TCTAGA	1 cut(s)	194
XspI	CTAG	2 cut(s)	83, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.