AT1G61770

Chaperone protein dnaJ

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013208
Physical Location & Seq
Forward (+)
22810111 .. 22812677
2567 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G61770.1

Sequence Viewer

Length: 903 bp
ATGGCGCCGCCGGTGACGGAGCGGTGGTGCTTAGCTTTGATTCTTCTCTTTCTCTCCTTGTTCGTCCAATCTTCAACGGCAATTTACTGCGGTGCTGAAGATTGTTATGCTCTTCTCGGAGTCGCTCAAGATGCGAACGCATCGGATATCAAGAGATCTTATTATAAGCTCTCTCTTCAACATCATCCAGATAAGAATCCGGATCCTGAATCGAGGAAACTGTTTGTTAAAATCGCCACTGCTTATGAGATTTTGAAAGATAATACTACTCGGGCACAATATGATTATGCAATTGAACATCCAGAAGAGGTATTTTACAACACCGCTCAATATTACCGCGCGAAATATGGACATAAATCGGATCCCCGTGCTGTTCTTGTTGGTCTATTGGTGGTTTTATCTGCATTTCAATATCTGAACAACGTGGCAAGGTATAATGAGGCTATAGCGACGGTTAAGCGAACACCTGCTTACAAAAATAAGCTCAAGGCATTAGAACTCGAACGCACAGGTGGAGTAAGTAACAAGAAGAAGGGTTCAAAGCAGATTGACCAGAAACTACAGGAAGAGCTAAGCAACGAACTTGACTTACAAATCAAAGGAGCTGAAAAACCATCGGTCTGGGAACTTCTCGGTGTTCGATTCATTCTCCTACCATACACTATCATTAAGCTTCTAGTATGGTACAGCAGTTGGGTGTGGAGATATAAGGTCAAGAAAGCTCCTTATTCATGGGAAGACGCATCATACCTAACCCGAAGATCACTTAGTGTGCCTGCCGACGCATGGGCTAATCTAGATGAATATAGGAAGGAAGATCTGGTGCAGAAAAGGCTGTGGGAGAAGCAGAATCTTGAGAATTACTTTGCAGAAATGCGTAAAGAATCGAAGCGGAGAAGATAG

Protein Analysis

300

Amino Acids

34.95

Weight (kDa)

9.29

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 34 - 95 5.4e-22 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61770
fragaria_vesca FvH4_3g02660
malus_domestica MD05G1341100.v1.1 MD10G1314600.v1.1
prunus_persica Prupe.4G026200_v2.0.a1 Prupe.4G026200_v2.0.a1
pyrus_communis pycom05g31040 pycom10g26670
rosa_chinensis RchiOBHm_Chr5g0003981
rosa_laevigata RLG00000031194
rosa_multiflora Rmu_sc0000547.1_g000013
rosa_roxburghii Rroxscaffold_1G00071980
rosa_rugosa Rorug04G0408700
rosa_samantha Rh5AG036400 Rh5BG035500 Rh5CG039100 Rh5DG035000
rosa_wichuraiana Rw5G003310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 165
AarI CACCTGC 1 cut(s) 475
Acc36I ACCTGC 1 cut(s) 475
AccB1I GGYRCC 1 cut(s) 4
AccBSI CCGCTC 2 cut(s) 22, 326
AccII CGCG 2 cut(s) 339, 341
AccIII TCCGGA 1 cut(s) 199
AciI CCGC 6 cut(s) 8, 22, 90, 324, 337, 892
AclWI GGATC 4 cut(s) 197, 210, 356, 369
AcuI CTGAAG 1 cut(s) 117
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 770
AfaI GTAC 1 cut(s) 686
AfiI CCNNNNNNNGG 1 cut(s) 786
AgsI TTSAA 6 cut(s) 75, 179, 256, 296, 410, 540
AluBI AGCT 7 cut(s) 35, 169, 484, 571, 605, 673, 722
AluI AGCT 7 cut(s) 35, 169, 484, 571, 605, 673, 722
AlwI GGATC 4 cut(s) 197, 210, 356, 369
Ama87I CYCGRG 1 cut(s) 270
Aor13HI TCCGGA 1 cut(s) 199
AspLEI GCGC 2 cut(s) 7, 341
AsuHPI GGTGA 1 cut(s) 25
AvaI CYCGRG 1 cut(s) 270
BaeGI GKGCMC 1 cut(s) 277
BaeI ACNNNNGTAYC 2 cut(s) 676, 709
BamHI GGATCC 2 cut(s) 202, 361
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 744
BccI CCATC 1 cut(s) 622
BceAI ACGGC 1 cut(s) 93
BfaI CTAG 2 cut(s) 677, 797
BfmI CTRYAG 2 cut(s) 444, 560
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 475
BglII AGATCT 2 cut(s) 155, 817
BisI GCNGC 1 cut(s) 8
BlpI GCTNAGC 2 cut(s) 31, 572
BlsI GCNGC 1 cut(s) 9
BmeT110I CYCGRG 1 cut(s) 270
BmiI GGNNCC 3 cut(s) 6, 204, 363
BmsI GCATC 3 cut(s) 121, 149, 752
BpiI GAAGAC 1 cut(s) 744
Bpu1102I GCTNAGC 2 cut(s) 31, 572
BpuEI CTTGAG 3 cut(s) 111, 470, 875
BsaBI GATNNNNATC 1 cut(s) 195
BsaHI GRCGYC 1 cut(s) 5
BsaWI WCCGGW 1 cut(s) 199
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 1 cut(s) 786
Bse118I RCCGGY 1 cut(s) 10
Bse8I GATNNNNATC 1 cut(s) 195
BseAI TCCGGA 1 cut(s) 199
BseGI GGATG 2 cut(s) 184, 298
BseJI GATNNNNATC 1 cut(s) 195
BseLI CCNNNNNNNGG 1 cut(s) 786
BseSI GKGCMC 1 cut(s) 277
BsgI GTGCAG 1 cut(s) 845
Bsh1236I CGCG 2 cut(s) 339, 341
BshNI GGYRCC 1 cut(s) 4
BsiHKCI CYCGRG 1 cut(s) 270
BsiSI CCGG 2 cut(s) 11, 200
BslI CCNNNNNNNGG 1 cut(s) 786
BsoBI CYCGRG 1 cut(s) 270
Bsp1286I GDGCHC 1 cut(s) 277
Bsp13I TCCGGA 1 cut(s) 199
Bsp143I GATC 5 cut(s) 155, 202, 361, 761, 817
Bsp1720I GCTNAGC 2 cut(s) 31, 572
BspACI CCGC 6 cut(s) 8, 22, 90, 324, 337, 892
BspEI TCCGGA 1 cut(s) 199
BspFNI CGCG 2 cut(s) 339, 341
BspLI GGNNCC 3 cut(s) 6, 204, 363
BspMI ACCTGC 1 cut(s) 475
BspPI GGATC 4 cut(s) 197, 210, 356, 369
BspQI GCTCTTC 2 cut(s) 117, 561
BspT107I GGYRCC 1 cut(s) 4
BsrBI CCGCTC 2 cut(s) 22, 326
BsrFI RCCGGY 1 cut(s) 10
BssAI RCCGGY 1 cut(s) 10
BssMI GATC 5 cut(s) 155, 202, 361, 761, 817
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 2 cut(s) 222, 454
Bst6I CTCTTC 4 cut(s) 117, 180, 300, 561
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 777
BstDEI CTNAG 3 cut(s) 31, 572, 767
BstF5I GGATG 2 cut(s) 184, 298
BstFNI CGCG 2 cut(s) 339, 341
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 341
BstKTI GATC 5 cut(s) 158, 205, 364, 764, 820
BstMBI GATC 5 cut(s) 155, 202, 361, 761, 817
BstMWI GCNNNNNNNGC 2 cut(s) 131, 832
BstSFI CTRYAG 2 cut(s) 444, 560
BstSLI GKGCMC 1 cut(s) 277
BstUI CGCG 2 cut(s) 339, 341
BstV2I GAAGAC 1 cut(s) 744
BstX2I RGATCY 4 cut(s) 155, 202, 361, 817
BstXI CCANNNNNNTGG 1 cut(s) 621
BstYI RGATCY 4 cut(s) 155, 202, 361, 817
BtsCI GGATG 2 cut(s) 184, 298
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 237
BveI ACCTGC 1 cut(s) 475
Cac8I GCNNGC 1 cut(s) 777
CfoI GCGC 2 cut(s) 7, 341
Cfr10I RCCGGY 1 cut(s) 10
CseI GACGC 2 cut(s) 749, 791
Csp6I GTAC 1 cut(s) 685
CviAII CATG 2 cut(s) 732, 786
CviQI GTAC 1 cut(s) 685
DdeI CTNAG 3 cut(s) 31, 572, 767
DinI GGCGCC 1 cut(s) 6
DpnI GATC 5 cut(s) 157, 204, 363, 763, 819
DpnII GATC 5 cut(s) 155, 202, 361, 761, 817
DraIII CACNNNGTG 1 cut(s) 770
Eam1104I CTCTTC 4 cut(s) 117, 180, 300, 561
EarI CTCTTC 4 cut(s) 117, 180, 300, 561
Eco32I GATATC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 117
Eco88I CYCGRG 1 cut(s) 270
EcoRV GATATC 1 cut(s) 148
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 2 cut(s) 735, 789
FatI CATG 2 cut(s) 731, 785
Fnu4HI GCNGC 1 cut(s) 8
FokI GGATG 2 cut(s) 171, 285
Fsp4HI GCNGC 1 cut(s) 8
FspBI CTAG 2 cut(s) 677, 797
GlaI GCGC 2 cut(s) 6, 340
GluI GCNGC 1 cut(s) 8
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 2 cut(s) 11, 200
HgaI GACGC 2 cut(s) 749, 791
HhaI GCGC 2 cut(s) 7, 341
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 735, 789
Hin6I GCGC 2 cut(s) 5, 339
HinP1I GCGC 2 cut(s) 5, 339
HindIII AAGCTT 1 cut(s) 671
HinfI GANTC 7 cut(s) 40, 120, 196, 209, 642, 850, 884
HpaII CCGG 2 cut(s) 11, 200
HphI GGTGA 1 cut(s) 25
Hpy188I TCNGA 4 cut(s) 119, 145, 361, 417
Hpy188III TCNNGA 9 cut(s) 128, 151, 188, 200, 206, 302, 715, 797, 854
Hpy99I CGWCG 2 cut(s) 454, 785
HpyAV CCTTC 2 cut(s) 526, 805
HpyCH4III ACNGT 2 cut(s) 222, 454
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 4 cut(s) 290, 404, 826, 869
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 832
HpyF3I CTNAG 3 cut(s) 31, 572, 767
HpySE526I ACGT 1 cut(s) 423
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 735, 789
HspAI GCGC 2 cut(s) 5, 339
KasI GGCGCC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 199
Kzo9I GATC 5 cut(s) 155, 202, 361, 761, 817
LguI GCTCTTC 2 cut(s) 117, 561
LmnI GCTCC 3 cut(s) 19, 602, 727
LweI GCATC 3 cut(s) 121, 149, 752
MaeI CTAG 2 cut(s) 677, 797
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 2 cut(s) 13, 521
MalI GATC 5 cut(s) 157, 204, 363, 763, 819
MbiI CCGCTC 2 cut(s) 22, 326
MboI GATC 5 cut(s) 155, 202, 361, 761, 817
MfeI CAATTG 1 cut(s) 291
MflI RGATCY 4 cut(s) 155, 202, 361, 817
MhlI GDGCHC 1 cut(s) 277
MluCI AATT 3 cut(s) 81, 291, 859
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 129
MnlI CCTC 3 cut(s) 207, 301, 433
MroI TCCGGA 1 cut(s) 199
MseI TTAA 3 cut(s) 228, 456, 669
MspI CCGG 2 cut(s) 11, 200
MunI CAATTG 1 cut(s) 291
MvnI CGCG 2 cut(s) 339, 341
MwoI GCNNNNNNNGC 2 cut(s) 131, 832
NarI GGCGCC 1 cut(s) 5
NdeII GATC 5 cut(s) 155, 202, 361, 761, 817
NlaIII CATG 2 cut(s) 735, 789
NlaIV GGNNCC 3 cut(s) 6, 204, 363
NmuCI GTSAC 1 cut(s) 13
PaqCI CACCTGC 1 cut(s) 475
PciSI GCTCTTC 2 cut(s) 117, 561
PfeI GAWTC 6 cut(s) 40, 196, 209, 642, 850, 884
PkrI GCNGC 1 cut(s) 9
PleI GAGTC 1 cut(s) 128
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 128
PsiI TTATAA 1 cut(s) 165
PspN4I GGNNCC 3 cut(s) 6, 204, 363
PsrI GAACNNNNNNTAC 2 cut(s) 573, 605
PsuI RGATCY 4 cut(s) 155, 202, 361, 817
RsaI GTAC 1 cut(s) 686
RsaNI GTAC 1 cut(s) 685
SapI GCTCTTC 2 cut(s) 117, 561
SaqAI TTAA 3 cut(s) 228, 456, 669
SatI GCNGC 1 cut(s) 8
Sau3AI GATC 5 cut(s) 155, 202, 361, 761, 817
SchI GAGTC 1 cut(s) 129
SduI GDGCHC 1 cut(s) 277
SfaNI GCATC 3 cut(s) 121, 149, 752
SfcI CTRYAG 2 cut(s) 444, 560
SfoI GGCGCC 1 cut(s) 6
SgrAI CRCCGGYG 1 cut(s) 10
SmlI CTYRAG 3 cut(s) 126, 485, 854
SmoI CTYRAG 3 cut(s) 126, 485, 854
Sse9I AATT 3 cut(s) 81, 291, 859
SsiI CCGC 6 cut(s) 8, 22, 90, 324, 337, 892
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 332
SspMI CTAG 2 cut(s) 677, 797
TaaI ACNGT 2 cut(s) 222, 454
TaiI ACGT 1 cut(s) 426
TaqI TCGA 4 cut(s) 212, 501, 640, 887
TaqII GACCGA 1 cut(s) 607
TasI AATT 3 cut(s) 81, 291, 859
TauI GCSGC 1 cut(s) 10
TfiI GAWTC 6 cut(s) 40, 196, 209, 642, 850, 884
Tru1I TTAA 3 cut(s) 228, 456, 669
Tru9I TTAA 3 cut(s) 228, 456, 669
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 3 cut(s) 634, 720, 816
TspGWI ACGGA 1 cut(s) 32
TspRI CASTG 1 cut(s) 244
XbaI TCTAGA 1 cut(s) 796
XspI CTAG 2 cut(s) 677, 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.