Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000547.1

Orthogroup ID

OG0013208

Physical Location & Seq

Genomic Coordinates Reverse (-)

48968 .. 53038

Gene Structure 4071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000547.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

atgaatgaaggaataagagagagaaaaattgggtcggcccgattggaggctggggtgtggttacgatgcagggctcggcccagagaagcttgggcggctgacagtgacttggcttggaggaatggcaactacggtttatctgggcttttgggcaataggcagagagagagagagtgtttgcagggaaaccatttcagaggaaatctagagagctccatcgtcgccatggcgccaccggcatcgattcggtggttcgcggccgcttcagctctaatgctctgccttctcatctctccatccaccgccatctactgcgacgaagacgactgctacgatctcctcggggttacgcagagcgcgaactcgtcggaaatcaagaaagcgtactataagctatctttgaagcatcacccggataagaacccggatccggaatcgaaaaagctgtttgttaaaattgcaaatgcttatgagattctgaaggacgaggcgtcgcgggagcagtatgattatgcaattgcacatcctgaggagtatttttacaatacagctcgctactatcaagcatattatggtcacaagacggatcctcgtgctgtactggttggctttcttttggttctttcagcatttcagtatttcaatcaatggacaaggtataatcaggctatagacatggttaaaaagacgcctgcttacaaaaatagacttcggcaattggaacttgagcgtagtggggggactacaactaagaagaagagtaacaagcagacaaacaagaaaatggatgaagatctcagcaaagaacttgaattgcagattacaggtgctgagcaaccctccatgtgggatcttcttggtgtccgtttcatactgttaccctacactattggcaagctgctgttatggcatggctgttggttctggagatacaaggtgaaacaagctccatatacatgggatgatgcctcctacctgacacagagatcccttagtgcgccacttgacgcatggagaaatgttgatgacttacgaaaggaagatcttatcaatagacgtttatgggaaggttcgaacttggagagctattatgcggagatgcgaaaagaatccaagcgcagaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

375

Amino Acids

43.69

Weight (kDa)

9.17

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61770
fragaria_vesca	FvH4_3g02660
malus_domestica	MD05G1341100.v1.1 MD10G1314600.v1.1
prunus_persica	Prupe.4G026200_v2.0.a1 Prupe.4G026200_v2.0.a1
pyrus_communis	pycom05g31040 pycom10g26670
rosa_chinensis	RchiOBHm_Chr5g0003981
rosa_laevigata	RLG00000031194
rosa_multiflora	Rmu_sc0000547.1_g000013
rosa_roxburghii	Rroxscaffold_1G00071980
rosa_rugosa	Rorug04G0408700
rosa_samantha	Rh5AG036400 Rh5BG035500 Rh5CG039100 Rh5DG035000
rosa_wichuraiana	Rw5G003310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	229
AccII	CGCG	3 cut(s)	257, 359, 496
AccIII	TCCGGA	1 cut(s)	430
AciI	CCGC	6 cut(s)	95, 257, 261, 303, 496, 1094
AclWI	GGATC	6 cut(s)	422, 435, 581, 594, 858, 981
AcoI	YGGCCR	1 cut(s)	258
AcuI	CTGAAG	2 cut(s)	249, 500
AcyI	GRCGYC	3 cut(s)	230, 491, 689
AfaI	GTAC	2 cut(s)	386, 600
AfiI	CCNNNNNNNGG	3 cut(s)	46, 430, 846
AgsI	TTSAA	3 cut(s)	403, 643, 812
AhdI	GACNNNNNGTC	1 cut(s)	490
AluBI	AGCT	9 cut(s)	89, 213, 269, 394, 445, 551, 898, 947, 1086
AluI	AGCT	9 cut(s)	89, 213, 269, 394, 445, 551, 898, 947, 1086
Alw21I	GWGCWC	1 cut(s)	215
AlwI	GGATC	6 cut(s)	422, 435, 581, 594, 858, 981
AlwNI	CAGNNNCTG	1 cut(s)	830
Ama87I	CYCGRG	1 cut(s)	341
Aor13HI	TCCGGA	1 cut(s)	430
AoxI	GGCC	3 cut(s)	36, 77, 258
ApeKI	GCWGC	1 cut(s)	898
AspLEI	GCGC	4 cut(s)	232, 359, 1000, 1119
AspS9I	GGNCC	2 cut(s)	37, 78
AsuC2I	CCSGG	2 cut(s)	413, 425
AsuHPI	GGTGA	2 cut(s)	401, 949
AsuII	TTCGAA	1 cut(s)	1073
AvaI	CYCGRG	1 cut(s)	341
AxyI	CCTNAGG	1 cut(s)	528
BamHI	GGATCC	2 cut(s)	427, 586
BanI	GGYRCC	1 cut(s)	229
BanII	GRGCYC	2 cut(s)	76, 215
BauI	CACGAG	1 cut(s)	591
BbsI	GAAGAC	1 cut(s)	327
Bbv12I	GWGCWC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	885
BccI	CCATC	3 cut(s)	224, 304, 314
BcnI	CCSGG	2 cut(s)	413, 425
BfaI	CTAG	1 cut(s)	206
BfmI	CTRYAG	1 cut(s)	669
BfoI	RGCGCY	1 cut(s)	233
BglII	AGATCT	2 cut(s)	793, 1042
BisI	GCNGC	4 cut(s)	96, 258, 261, 899
BlpI	GCTNAGC	1 cut(s)	831
BlsI	GCNGC	4 cut(s)	97, 259, 262, 900
Bme1390I	CCNGG	2 cut(s)	413, 425
BmeRI	GACNNNNNGTC	1 cut(s)	490
BmeT110I	CYCGRG	1 cut(s)	341
BmgT120I	GGNCC	2 cut(s)	37, 78
BmiI	GGNNCC	3 cut(s)	231, 429, 588
BmrFI	CCNGG	2 cut(s)	413, 425
BmsI	GCATC	5 cut(s)	56, 248, 415, 955, 1089
BpiI	GAAGAC	1 cut(s)	327
BplI	GAGNNNNNCTC	2 cut(s)	824, 856
BpmI	CTGGAG	1 cut(s)	946
Bpu1102I	GCTNAGC	1 cut(s)	831
Bpu14I	TTCGAA	1 cut(s)	1073
BpuEI	CTTGAG	1 cut(s)	746
BpuMI	CCSGG	2 cut(s)	413, 425
Bsa29I	ATCGAT	1 cut(s)	242
BsaBI	GATNNNNATC	1 cut(s)	792
BsaHI	GRCGYC	3 cut(s)	230, 491, 689
BsaJI	CCNNGG	2 cut(s)	225, 340
BsaWI	WCCGGW	1 cut(s)	430
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 430, 846
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	606
Bse21I	CCTNAGG	1 cut(s)	528
Bse8I	GATNNNNATC	1 cut(s)	792
BseAI	TCCGGA	1 cut(s)	430
BseCI	ATCGAT	1 cut(s)	242
BseDI	CCNNGG	2 cut(s)	225, 340
BseGI	GGATG	4 cut(s)	296, 523, 793, 967
BseJI	GATNNNNATC	1 cut(s)	792
BseLI	CCNNNNNNNGG	3 cut(s)	46, 430, 846
BseMII	CTCAG	3 cut(s)	519, 811, 822
BseNI	ACTGG	1 cut(s)	606
BseRI	GAGGAG	2 cut(s)	329, 545
BseX3I	CGGCCG	1 cut(s)	258
BseXI	GCAGC	1 cut(s)	885
BseYI	CCCAGC	1 cut(s)	50
Bsh1236I	CGCG	3 cut(s)	257, 359, 496
Bsh1285I	CGRYCG	1 cut(s)	261
BshFI	GGCC	3 cut(s)	38, 79, 260
BshNI	GGYRCC	1 cut(s)	229
BshVI	ATCGAT	1 cut(s)	242
BsiEI	CGRYCG	1 cut(s)	261
BsiHKAI	GWGCWC	1 cut(s)	215
BsiHKCI	CYCGRG	1 cut(s)	341
BsiSI	CCGG	4 cut(s)	236, 413, 425, 431
BslFI	GGGAC	1 cut(s)	754
BslI	CCNNNNNNNGG	3 cut(s)	46, 430, 846
BsmFI	GGGAC	1 cut(s)	754
BsnI	GGCC	3 cut(s)	38, 79, 260
BsoBI	CYCGRG	1 cut(s)	341
Bsp119I	TTCGAA	1 cut(s)	1073
Bsp1286I	GDGCHC	2 cut(s)	76, 215
Bsp13I	TCCGGA	1 cut(s)	430
Bsp143I	GATC	7 cut(s)	334, 427, 586, 793, 850, 986, 1042
Bsp1720I	GCTNAGC	1 cut(s)	831
Bsp19I	CCATGG	1 cut(s)	225
BspACI	CCGC	6 cut(s)	95, 257, 261, 303, 496, 1094
BspANI	GGCC	3 cut(s)	38, 79, 260
BspCNI	CTCAG	3 cut(s)	520, 810, 823
BspDI	ATCGAT	1 cut(s)	242
BspEI	TCCGGA	1 cut(s)	430
BspFNI	CGCG	3 cut(s)	257, 359, 496
BspLI	GGNNCC	3 cut(s)	231, 429, 588
BspPI	GGATC	6 cut(s)	422, 435, 581, 594, 858, 981
BspT104I	TTCGAA	1 cut(s)	1073
BspT107I	GGYRCC	1 cut(s)	229
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	606
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	2 cut(s)	225, 340
BssMI	GATC	7 cut(s)	334, 427, 586, 793, 850, 986, 1042
BssNI	GRCGYC	3 cut(s)	230, 491, 689
BssSI	CACGAG	1 cut(s)	591
BssT1I	CCWWGG	1 cut(s)	225
Bst2BI	CACGAG	1 cut(s)	591
Bst4CI	ACNGT	3 cut(s)	104, 134, 876
Bst6I	CTCTTC	1 cut(s)	752
BstACI	GRCGYC	3 cut(s)	230, 491, 689
BstBI	TTCGAA	1 cut(s)	1073
BstC8I	GCNNGC	3 cut(s)	553, 693, 896
BstDEI	CTNAG	5 cut(s)	528, 750, 797, 831, 992
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	4 cut(s)	296, 523, 793, 967
BstFNI	CGCG	3 cut(s)	257, 359, 496
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	4 cut(s)	232, 359, 1000, 1119
BstKTI	GATC	7 cut(s)	337, 430, 589, 796, 853, 989, 1045
BstMBI	GATC	7 cut(s)	334, 427, 586, 793, 850, 986, 1042
BstMCI	CGRYCG	1 cut(s)	261
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 236, 266, 907
BstSCI	CCNGG	2 cut(s)	411, 423
BstSFI	CTRYAG	1 cut(s)	669
BstUI	CGCG	3 cut(s)	257, 359, 496
BstV1I	GCAGC	1 cut(s)	885
BstV2I	GAAGAC	1 cut(s)	327
BstX2I	RGATCY	6 cut(s)	427, 586, 793, 850, 986, 1042
BstXI	CCANNNNNNTGG	1 cut(s)	957
BstYI	RGATCY	6 cut(s)	427, 586, 793, 850, 986, 1042
BstZI	CGGCCG	1 cut(s)	258
Bsu15I	ATCGAT	1 cut(s)	242
Bsu36I	CCTNAGG	1 cut(s)	528
BsuRI	GGCC	3 cut(s)	38, 79, 260
BsuTUI	ATCGAT	1 cut(s)	242
BtgI	CCRYGG	1 cut(s)	225
BtsCI	GGATG	4 cut(s)	296, 523, 793, 967
BtsIMutI	CAGTG	1 cut(s)	109
Cac8I	GCNNGC	3 cut(s)	553, 693, 896
CaiI	CAGNNNCTG	1 cut(s)	830
CciNI	GCGGCCGC	1 cut(s)	258
CfoI	GCGC	4 cut(s)	232, 359, 1000, 1119
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	2 cut(s)	37, 78
ClaI	ATCGAT	1 cut(s)	242
CseI	GACGC	3 cut(s)	480, 697, 1016
Csp6I	GTAC	2 cut(s)	385, 599
CviAII	CATG	6 cut(s)	226, 676, 844, 911, 957, 1011
CviQI	GTAC	2 cut(s)	385, 599
DdeI	CTNAG	5 cut(s)	528, 750, 797, 831, 992
DinI	GGCGCC	1 cut(s)	231
DpnI	GATC	7 cut(s)	336, 429, 588, 795, 852, 988, 1044
DpnII	GATC	7 cut(s)	334, 427, 586, 793, 850, 986, 1042
DriI	GACNNNNNGTC	1 cut(s)	490
EaeI	YGGCCR	1 cut(s)	258
EagI	CGGCCG	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	752
Eam1105I	GACNNNNNGTC	1 cut(s)	490
EarI	CTCTTC	1 cut(s)	752
Ecl136II	GAGCTC	1 cut(s)	213
EclXI	CGGCCG	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	225
Eco24I	GRGCYC	2 cut(s)	76, 215
Eco52I	CGGCCG	1 cut(s)	258
Eco53kI	GAGCTC	1 cut(s)	213
Eco57I	CTGAAG	2 cut(s)	249, 500
Eco81I	CCTNAGG	1 cut(s)	528
Eco88I	CYCGRG	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	225
EcoT38I	GRGCYC	2 cut(s)	76, 215
EgeI	GGCGCC	1 cut(s)	231
EheI	GGCGCC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	6 cut(s)	229, 679, 847, 914, 960, 1014
FaqI	GGGAC	1 cut(s)	754
FatI	CATG	6 cut(s)	225, 675, 843, 910, 956, 1010
FauI	CCCGC	1 cut(s)	489
Fnu4HI	GCNGC	4 cut(s)	96, 258, 261, 899
FokI	GGATG	4 cut(s)	283, 510, 800, 974
FriOI	GRGCYC	2 cut(s)	76, 215
Fsp4HI	GCNGC	4 cut(s)	96, 258, 261, 899
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	4 cut(s)	231, 358, 999, 1118
GluI	GCNGC	4 cut(s)	96, 258, 261, 899
GsaI	CCCAGC	1 cut(s)	54
GsuI	CTGGAG	1 cut(s)	946
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	3 cut(s)	38, 79, 260
HapII	CCGG	4 cut(s)	236, 413, 425, 431
HgaI	GACGC	3 cut(s)	480, 697, 1016
HhaI	GCGC	4 cut(s)	232, 359, 1000, 1119
Hin1I	GRCGYC	3 cut(s)	230, 491, 689
Hin1II	CATG	6 cut(s)	229, 679, 847, 914, 960, 1014
Hin6I	GCGC	4 cut(s)	230, 357, 998, 1117
HinP1I	GCGC	4 cut(s)	230, 357, 998, 1117
HindIII	AAGCTT	1 cut(s)	87
HinfI	GANTC	4 cut(s)	244, 434, 475, 1109
HpaII	CCGG	4 cut(s)	236, 413, 425, 431
HphI	GGTGA	2 cut(s)	401, 949
Hpy188I	TCNGA	3 cut(s)	197, 370, 480
Hpy188III	TCNNGA	5 cut(s)	206, 376, 431, 527, 925
Hpy99I	CGWCG	4 cut(s)	224, 320, 370, 496
HpyAV	CCTTC	3 cut(s)	293, 475, 1061
HpyCH4III	ACNGT	3 cut(s)	104, 134, 876
HpyCH4IV	ACGT	1 cut(s)	1057
HpyCH4V	TGCA	6 cut(s)	69, 181, 461, 515, 521, 817
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 236, 266, 907
HpyF3I	CTNAG	5 cut(s)	528, 750, 797, 831, 992
HpySE526I	ACGT	1 cut(s)	1057
Hsp92I	GRCGYC	3 cut(s)	230, 491, 689
Hsp92II	CATG	6 cut(s)	229, 679, 847, 914, 960, 1014
HspAI	GCGC	4 cut(s)	230, 357, 998, 1117
KasI	GGCGCC	1 cut(s)	229
Kpn2I	TCCGGA	1 cut(s)	430
Kzo9I	GATC	7 cut(s)	334, 427, 586, 793, 850, 986, 1042
LmnI	GCTCC	3 cut(s)	218, 499, 952
Lsp1109I	GCAGC	1 cut(s)	885
LweI	GCATC	5 cut(s)	56, 248, 415, 955, 1089
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	1 cut(s)	1057
MaeIII	GTNAC	6 cut(s)	60, 104, 346, 575, 761, 876
MalI	GATC	7 cut(s)	336, 429, 588, 795, 852, 988, 1044
MboI	GATC	7 cut(s)	334, 427, 586, 793, 850, 986, 1042
MboII	GAAGA	6 cut(s)	332, 766, 769, 803, 845, 1052
MfeI	CAATTG	2 cut(s)	516, 716
MflI	RGATCY	6 cut(s)	427, 586, 793, 850, 986, 1042
MhlI	GDGCHC	2 cut(s)	76, 215
MluCI	AATT	5 cut(s)	27, 456, 516, 716, 812
Mly113I	GGCGCC	1 cut(s)	230
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	9 cut(s)	40, 111, 191, 350, 481, 523, 600, 850, 979
MroI	TCCGGA	1 cut(s)	430
MseI	TTAA	2 cut(s)	453, 681
MslI	CAYNNNNRTG	1 cut(s)	955
MspI	CCGG	4 cut(s)	236, 413, 425, 431
MspR9I	CCNGG	2 cut(s)	413, 425
MunI	CAATTG	2 cut(s)	516, 716
MvnI	CGCG	3 cut(s)	257, 359, 496
MwoI	GCNNNNNNNGC	4 cut(s)	95, 236, 266, 907
NarI	GGCGCC	1 cut(s)	230
NciI	CCSGG	2 cut(s)	413, 425
NcoI	CCATGG	1 cut(s)	225
NdeII	GATC	7 cut(s)	334, 427, 586, 793, 850, 986, 1042
NlaIII	CATG	6 cut(s)	229, 679, 847, 914, 960, 1014
NlaIV	GGNNCC	3 cut(s)	231, 429, 588
NmeAIII	GCCGAG	1 cut(s)	55
NmuCI	GTSAC	2 cut(s)	104, 575
NotI	GCGGCCGC	1 cut(s)	258
NspV	TTCGAA	1 cut(s)	1073
PcsI	WCGNNNNNNNCGW	2 cut(s)	330, 356
PfeI	GAWTC	4 cut(s)	244, 434, 475, 1109
PkrI	GCNGC	4 cut(s)	97, 259, 262, 900
PluTI	GGCGCC	1 cut(s)	233
Psp124BI	GAGCTC	1 cut(s)	215
PspFI	CCCAGC	1 cut(s)	50
PspN4I	GGNNCC	3 cut(s)	231, 429, 588
PspPI	GGNCC	2 cut(s)	37, 78
PstNI	CAGNNNCTG	1 cut(s)	830
PsuI	RGATCY	6 cut(s)	427, 586, 793, 850, 986, 1042
RsaI	GTAC	2 cut(s)	386, 600
RsaNI	GTAC	2 cut(s)	385, 599
RseI	CAYNNNNRTG	1 cut(s)	955
SacI	GAGCTC	1 cut(s)	215
SaqAI	TTAA	2 cut(s)	453, 681
SatI	GCNGC	4 cut(s)	96, 258, 261, 899
Sau3AI	GATC	7 cut(s)	334, 427, 586, 793, 850, 986, 1042
Sau96I	GGNCC	2 cut(s)	37, 78
ScrFI	CCNGG	2 cut(s)	413, 425
SduI	GDGCHC	2 cut(s)	76, 215
SfaNI	GCATC	5 cut(s)	56, 248, 415, 955, 1089
SfcI	CTRYAG	1 cut(s)	669
SfoI	GGCGCC	1 cut(s)	231
SfuI	TTCGAA	1 cut(s)	1073
SmiMI	CAYNNNNRTG	1 cut(s)	955
SmlI	CTYRAG	1 cut(s)	725
SmoI	CTYRAG	1 cut(s)	725
Sse9I	AATT	5 cut(s)	27, 456, 516, 716, 812
SsiI	CCGC	6 cut(s)	95, 257, 261, 303, 496, 1094
SspDI	GGCGCC	1 cut(s)	229
SspMI	CTAG	1 cut(s)	206
SstI	GAGCTC	1 cut(s)	215
StyD4I	CCNGG	2 cut(s)	411, 423
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	3 cut(s)	104, 134, 876
TaiI	ACGT	1 cut(s)	1060
TaqI	TCGA	3 cut(s)	242, 437, 1073
TasI	AATT	5 cut(s)	27, 456, 516, 716, 812
TatI	WGTACW	1 cut(s)	598
TauI	GCSGC	3 cut(s)	98, 260, 263
TfiI	GAWTC	4 cut(s)	244, 434, 475, 1109
Tru1I	TTAA	2 cut(s)	453, 681
Tru9I	TTAA	2 cut(s)	453, 681
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	2 cut(s)	104, 575
TseI	GCWGC	1 cut(s)	898
Tsp45I	GTSAC	2 cut(s)	104, 575
TspDTI	ATGAA	4 cut(s)	17, 21, 804, 859
TspGWI	ACGGA	2 cut(s)	599, 854
TspRI	CASTG	1 cut(s)	109
XbaI	TCTAGA	1 cut(s)	205
XcmI	CCANNNNNNNNNTGG	2 cut(s)	223, 1008
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.