Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0013208

Physical Location & Seq

Genomic Coordinates Forward (+)

30938721 .. 30941303

Gene Structure 2583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g31040.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGGTTTGTCATTAAACGCGCTCCTGCTCTCGGAATCCATTTTCAGAGAAATCCGTAGCTCCGTCGGAACCATGGCGCCACCGGCAGCGATTCGGTGGTTCGCGGTCGTTTCATTTCTAATGCTGTTCCAGCTCATCACTCCATCGATGGCCATCTACTGCGACGAGGACGACTGCTACGATCTCCTCGGGGTTACGCAGAGCGCCAATTCGTCGGAAATCAAGAAAGCTTACTACAAGCTCTCATTGAAACATCACCCGGATAAAAACCCGGATCCGGAATCGAAAAAGCTGTTTGTGAAAATTGCCAACGCTTATGAGATTCTGAAAGACGAAGCGTCGCGCGAGCAGTATGATTATGCCATTGCACATCCAGAGGAGGATCCTCGGGCTGTCCTGGTTGGCCTTCTTTTGATTCTTTCTGCATTTCAGTATCTAAATCAGTGGACAAGGTATAATCAGGCTGTAGACATGGTCAAGAAGACTCCTGCGTACAAAAATAGACTACGGGCTTTGGAACTTGAGCGTACTGGAGGGACTACAAATAAGAAGAAGAGCAACAGGCAGATGAACAAGAAAGTGGAAGAAGATCTCGGCAGCGAACTGGAGCTGCAGATTAACGGTGCGGAACAACCCTCCATGTGGGATCTTCTTGGTGTCCGTTTCATACTTCTGCCCTACACTATTGGCAAGCTATTACTATGGTGTGGCTGTTGGTTCTGGAGATACAATGTGAGAAAAGCACCATATACATGGGATGATGCCTCCTACCTGACACGGAGATCCCTTGGTGCGCCTATTGACGGATGGAGAAATCTAGATGAATCAAGAAAGGAAGATCTTATTCATAAACGTTTATGGGAAAAAGCAAACTTGGAGAGCTACCTTGCGGATATGCGCAAAGAATCCAAGCGGAGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

308

Amino Acids

35.66

Weight (kDa)

8.94

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61770
fragaria_vesca	FvH4_3g02660
malus_domestica	MD05G1341100.v1.1 MD10G1314600.v1.1
prunus_persica	Prupe.4G026200_v2.0.a1 Prupe.4G026200_v2.0.a1
pyrus_communis	pycom05g31040 pycom10g26670
rosa_chinensis	RchiOBHm_Chr5g0003981
rosa_laevigata	RLG00000031194
rosa_multiflora	Rmu_sc0000547.1_g000013
rosa_roxburghii	Rroxscaffold_1G00071980
rosa_rugosa	Rorug04G0408700
rosa_samantha	Rh5AG036400 Rh5BG035500 Rh5CG039100 Rh5DG035000
rosa_wichuraiana	Rw5G003310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	899
AccB1I	GGYRCC	1 cut(s)	76
AccI	GTMKAC	1 cut(s)	468
AccII	CGCG	4 cut(s)	20, 104, 343, 345
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	4 cut(s)	104, 626, 890, 913
AclI	AACGTT	1 cut(s)	853
AclWI	GGATC	6 cut(s)	269, 282, 377, 390, 654, 777
AcoI	YGGCCR	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	2 cut(s)	494, 529
AfiI	CCNNNNNNNGG	4 cut(s)	31, 277, 642, 803
AgsI	TTSAA	1 cut(s)	250
AhdI	GACNNNNNGTC	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	396
AluBI	AGCT	8 cut(s)	60, 133, 230, 241, 292, 610, 694, 882
AluI	AGCT	8 cut(s)	60, 133, 230, 241, 292, 610, 694, 882
AlwI	GGATC	6 cut(s)	269, 282, 377, 390, 654, 777
Ama87I	CYCGRG	2 cut(s)	188, 387
Aor13HI	TCCGGA	1 cut(s)	277
AoxI	GGCC	2 cut(s)	150, 403
ApeKI	GCWGC	3 cut(s)	86, 597, 610
AspLEI	GCGC	6 cut(s)	22, 79, 206, 345, 796, 900
AsuC2I	CCSGG	2 cut(s)	260, 272
AsuHPI	GGTGA	1 cut(s)	248
AvaI	CYCGRG	2 cut(s)	188, 387
BalI	TGGCCA	1 cut(s)	152
BamHI	GGATCC	2 cut(s)	274, 382
BanI	GGYRCC	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	488
BbvI	GCAGC	3 cut(s)	98, 597, 609
BccI	CCATC	4 cut(s)	142, 151, 161, 801
BciT130I	CCWGG	1 cut(s)	398
BcnI	CCSGG	2 cut(s)	260, 272
BfaI	CTAG	1 cut(s)	818
BfmI	CTRYAG	2 cut(s)	465, 611
BfoI	RGCGCY	2 cut(s)	80, 207
BglII	AGATCT	2 cut(s)	589, 838
BisI	GCNGC	3 cut(s)	87, 598, 611
BlsI	GCNGC	3 cut(s)	88, 599, 612
Bme1390I	CCNGG	3 cut(s)	260, 272, 398
BmeRI	GACNNNNNGTC	1 cut(s)	337
BmeT110I	CYCGRG	2 cut(s)	188, 387
BmiI	GGNNCC	4 cut(s)	70, 78, 276, 384
BmrFI	CCNGG	3 cut(s)	260, 272, 398
BmsI	GCATC	1 cut(s)	751
BpiI	GAAGAC	1 cut(s)	488
BpmI	CTGGAG	3 cut(s)	552, 626, 742
BpuEI	CTTGAG	1 cut(s)	542
BpuMI	CCSGG	2 cut(s)	260, 272
Bsa29I	ATCGAT	1 cut(s)	146
BsaBI	GATNNNNATC	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	77
BsaJI	CCNNGG	4 cut(s)	72, 187, 386, 787
BsaWI	WCCGGW	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 277, 642, 803
Bse118I	RCCGGY	1 cut(s)	82
Bse1I	ACTGG	2 cut(s)	535, 609
Bse3DI	GCAATG	1 cut(s)	363
Bse8I	GATNNNNATC	1 cut(s)	152
BseAI	TCCGGA	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	398
BseCI	ATCGAT	1 cut(s)	146
BseDI	CCNNGG	4 cut(s)	72, 187, 386, 787
BseGI	GGATG	3 cut(s)	370, 763, 812
BseJI	GATNNNNATC	1 cut(s)	152
BseLI	CCNNNNNNNGG	4 cut(s)	31, 277, 642, 803
BseMI	GCAATG	1 cut(s)	363
BseNI	ACTGG	2 cut(s)	535, 609
BseRI	GAGGAG	2 cut(s)	176, 392
BseXI	GCAGC	3 cut(s)	98, 597, 609
Bsh1236I	CGCG	4 cut(s)	20, 104, 343, 345
Bsh1285I	CGRYCG	1 cut(s)	108
BshFI	GGCC	2 cut(s)	152, 405
BshNI	GGYRCC	1 cut(s)	76
BshVI	ATCGAT	1 cut(s)	146
BsiEI	CGRYCG	1 cut(s)	108
BsiHKCI	CYCGRG	2 cut(s)	188, 387
BsiSI	CCGG	4 cut(s)	83, 260, 272, 278
BslFI	GGGAC	1 cut(s)	550
BslI	CCNNNNNNNGG	4 cut(s)	31, 277, 642, 803
BsmFI	GGGAC	1 cut(s)	550
BsnI	GGCC	2 cut(s)	152, 405
BsoBI	CYCGRG	2 cut(s)	188, 387
Bsp13I	TCCGGA	1 cut(s)	277
Bsp143I	GATC	7 cut(s)	181, 274, 382, 589, 646, 782, 838
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	4 cut(s)	104, 626, 890, 913
BspANI	GGCC	2 cut(s)	152, 405
BspDI	ATCGAT	1 cut(s)	146
BspEI	TCCGGA	1 cut(s)	277
BspFNI	CGCG	4 cut(s)	20, 104, 343, 345
BspLI	GGNNCC	4 cut(s)	70, 78, 276, 384
BspMAI	CTGCAG	1 cut(s)	615
BspPI	GGATC	6 cut(s)	269, 282, 377, 390, 654, 777
BspQI	GCTCTTC	1 cut(s)	548
BspT107I	GGYRCC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	363
BsrFI	RCCGGY	1 cut(s)	82
BsrI	ACTGG	2 cut(s)	535, 609
BssAI	RCCGGY	1 cut(s)	82
BssECI	CCNNGG	4 cut(s)	72, 187, 386, 787
BssMI	GATC	7 cut(s)	181, 274, 382, 589, 646, 782, 838
BssNI	GRCGYC	1 cut(s)	77
BssT1I	CCWWGG	2 cut(s)	72, 787
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	623
Bst6I	CTCTTC	1 cut(s)	548
BstACI	GRCGYC	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	347, 692
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	3 cut(s)	370, 763, 812
BstFNI	CGCG	4 cut(s)	20, 104, 343, 345
BstH2I	RGCGCY	2 cut(s)	80, 207
BstHHI	GCGC	6 cut(s)	22, 79, 206, 345, 796, 900
BstKTI	GATC	7 cut(s)	184, 277, 385, 592, 649, 785, 841
BstMBI	GATC	7 cut(s)	181, 274, 382, 589, 646, 782, 838
BstMCI	CGRYCG	1 cut(s)	108
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 130
BstNI	CCWGG	1 cut(s)	398
BstSCI	CCNGG	3 cut(s)	258, 270, 396
BstSFI	CTRYAG	2 cut(s)	465, 611
BstUI	CGCG	4 cut(s)	20, 104, 343, 345
BstV1I	GCAGC	3 cut(s)	98, 597, 609
BstV2I	GAAGAC	1 cut(s)	488
BstX2I	RGATCY	6 cut(s)	274, 382, 589, 646, 782, 838
BstXI	CCANNNNNNTGG	1 cut(s)	753
BstYI	RGATCY	6 cut(s)	274, 382, 589, 646, 782, 838
Bsu15I	ATCGAT	1 cut(s)	146
BsuRI	GGCC	2 cut(s)	152, 405
BsuTUI	ATCGAT	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	3 cut(s)	370, 763, 812
BtsIMutI	CAGTG	1 cut(s)	449
Cac8I	GCNNGC	2 cut(s)	347, 692
CfoI	GCGC	6 cut(s)	22, 79, 206, 345, 796, 900
Cfr10I	RCCGGY	1 cut(s)	82
ClaI	ATCGAT	1 cut(s)	146
CseI	GACGC	1 cut(s)	327
Csp6I	GTAC	2 cut(s)	493, 528
CviAII	CATG	4 cut(s)	73, 472, 640, 753
CviQI	GTAC	2 cut(s)	493, 528
DinI	GGCGCC	1 cut(s)	78
DpnI	GATC	7 cut(s)	183, 276, 384, 591, 648, 784, 840
DpnII	GATC	7 cut(s)	181, 274, 382, 589, 646, 782, 838
DriI	GACNNNNNGTC	1 cut(s)	337
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	548
Eam1105I	GACNNNNNGTC	1 cut(s)	337
EarI	CTCTTC	1 cut(s)	548
Eco130I	CCWWGG	2 cut(s)	72, 787
Eco88I	CYCGRG	2 cut(s)	188, 387
EcoRII	CCWGG	1 cut(s)	396
EcoT14I	CCWWGG	2 cut(s)	72, 787
EgeI	GGCGCC	1 cut(s)	78
EheI	GGCGCC	1 cut(s)	78
ErhI	CCWWGG	2 cut(s)	72, 787
FaeI	CATG	4 cut(s)	76, 475, 643, 756
FaqI	GGGAC	1 cut(s)	550
FatI	CATG	4 cut(s)	72, 471, 639, 752
FblI	GTMKAC	1 cut(s)	468
Fnu4HI	GCNGC	3 cut(s)	87, 598, 611
FokI	GGATG	3 cut(s)	357, 770, 819
Fsp4HI	GCNGC	3 cut(s)	87, 598, 611
FspBI	CTAG	1 cut(s)	818
FspI	TGCGCA	1 cut(s)	899
GlaI	GCGC	6 cut(s)	21, 78, 205, 344, 795, 899
GluI	GCNGC	3 cut(s)	87, 598, 611
GsuI	CTGGAG	3 cut(s)	552, 626, 742
HaeII	RGCGCY	2 cut(s)	80, 207
HaeIII	GGCC	2 cut(s)	152, 405
HapII	CCGG	4 cut(s)	83, 260, 272, 278
HgaI	GACGC	1 cut(s)	327
HhaI	GCGC	6 cut(s)	22, 79, 206, 345, 796, 900
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	4 cut(s)	76, 475, 643, 756
Hin6I	GCGC	6 cut(s)	20, 77, 204, 343, 794, 898
HinP1I	GCGC	6 cut(s)	20, 77, 204, 343, 794, 898
HindIII	AAGCTT	1 cut(s)	228
HinfI	GANTC	8 cut(s)	35, 91, 281, 322, 415, 484, 824, 905
HpaII	CCGG	4 cut(s)	83, 260, 272, 278
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	2 cut(s)	447, 469
Hpy188I	TCNGA	5 cut(s)	34, 47, 68, 217, 327
Hpy188III	TCNNGA	7 cut(s)	223, 278, 374, 478, 721, 818, 828
Hpy8I	GTNNAC	2 cut(s)	447, 469
Hpy99I	CGWCG	4 cut(s)	68, 167, 217, 343
HpyAV	CCTTC	1 cut(s)	416
HpyCH4III	ACNGT	1 cut(s)	623
HpyCH4IV	ACGT	1 cut(s)	853
HpyCH4V	TGCA	3 cut(s)	368, 425, 613
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 130
HpySE526I	ACGT	1 cut(s)	853
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	4 cut(s)	76, 475, 643, 756
HspAI	GCGC	6 cut(s)	20, 77, 204, 343, 794, 898
KasI	GGCGCC	1 cut(s)	76
Kpn2I	TCCGGA	1 cut(s)	277
Kzo9I	GATC	7 cut(s)	181, 274, 382, 589, 646, 782, 838
LguI	GCTCTTC	1 cut(s)	548
LmnI	GCTCC	3 cut(s)	27, 65, 607
Lsp1109I	GCAGC	3 cut(s)	98, 597, 609
LweI	GCATC	1 cut(s)	751
MaeI	CTAG	1 cut(s)	818
MaeII	ACGT	1 cut(s)	853
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	7 cut(s)	183, 276, 384, 591, 648, 784, 840
MboI	GATC	7 cut(s)	181, 274, 382, 589, 646, 782, 838
MboII	GAAGA	7 cut(s)	493, 562, 565, 596, 599, 641, 848
MflI	RGATCY	6 cut(s)	274, 382, 589, 646, 782, 838
MlsI	TGGCCA	1 cut(s)	152
MluCI	AATT	2 cut(s)	208, 303
MluNI	TGGCCA	1 cut(s)	152
Mly113I	GGCGCC	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	478
MmeI	TCCRAC	2 cut(s)	46, 195
MnlI	CCTC	8 cut(s)	160, 197, 370, 373, 396, 527, 646, 775
Mox20I	TGGCCA	1 cut(s)	152
MroI	TCCGGA	1 cut(s)	277
MscI	TGGCCA	1 cut(s)	152
MseI	TTAA	2 cut(s)	14, 618
MslI	CAYNNNNRTG	1 cut(s)	751
Msp20I	TGGCCA	1 cut(s)	152
MspI	CCGG	4 cut(s)	83, 260, 272, 278
MspR9I	CCNGG	3 cut(s)	260, 272, 398
MvaI	CCWGG	1 cut(s)	398
MvnI	CGCG	4 cut(s)	20, 104, 343, 345
MwoI	GCNNNNNNNGC	2 cut(s)	83, 130
NarI	GGCGCC	1 cut(s)	77
NciI	CCSGG	2 cut(s)	260, 272
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	7 cut(s)	181, 274, 382, 589, 646, 782, 838
NlaIII	CATG	4 cut(s)	76, 475, 643, 756
NlaIV	GGNNCC	4 cut(s)	70, 78, 276, 384
NmeAIII	GCCGAG	1 cut(s)	573
NsbI	TGCGCA	1 cut(s)	899
PciSI	GCTCTTC	1 cut(s)	548
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PfeI	GAWTC	7 cut(s)	35, 91, 281, 322, 415, 824, 905
PflFI	GACNNNGTC	1 cut(s)	473
PkrI	GCNGC	3 cut(s)	88, 599, 612
PleI	GAGTC	1 cut(s)	478
PluTI	GGCGCC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	478
Psp1406I	AACGTT	1 cut(s)	853
Psp6I	CCWGG	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	4 cut(s)	70, 78, 276, 384
PstI	CTGCAG	1 cut(s)	615
PsuI	RGATCY	6 cut(s)	274, 382, 589, 646, 782, 838
PsyI	GACNNNGTC	1 cut(s)	473
RsaI	GTAC	2 cut(s)	494, 529
RsaNI	GTAC	2 cut(s)	493, 528
RseI	CAYNNNNRTG	1 cut(s)	751
SapI	GCTCTTC	1 cut(s)	548
SaqAI	TTAA	2 cut(s)	14, 618
SatI	GCNGC	3 cut(s)	87, 598, 611
Sau3AI	GATC	7 cut(s)	181, 274, 382, 589, 646, 782, 838
SchI	GAGTC	1 cut(s)	478
ScrFI	CCNGG	3 cut(s)	260, 272, 398
SfaNI	GCATC	1 cut(s)	751
SfcI	CTRYAG	2 cut(s)	465, 611
SfoI	GGCGCC	1 cut(s)	78
SmiMI	CAYNNNNRTG	1 cut(s)	751
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	2 cut(s)	208, 303
SsiI	CCGC	4 cut(s)	104, 626, 890, 913
SspDI	GGCGCC	1 cut(s)	76
SspMI	CTAG	1 cut(s)	818
StyD4I	CCNGG	3 cut(s)	258, 270, 396
StyI	CCWWGG	2 cut(s)	72, 787
TaaI	ACNGT	1 cut(s)	623
TaiI	ACGT	1 cut(s)	856
TaqI	TCGA	2 cut(s)	146, 284
TasI	AATT	2 cut(s)	208, 303
TfiI	GAWTC	7 cut(s)	35, 91, 281, 322, 415, 824, 905
Tru1I	TTAA	2 cut(s)	14, 618
Tru9I	TTAA	2 cut(s)	14, 618
TscAI	CASTG	1 cut(s)	449
TseI	GCWGC	3 cut(s)	86, 597, 610
TspDTI	ATGAA	5 cut(s)	102, 584, 655, 836, 837
TspGWI	ACGGA	5 cut(s)	44, 52, 650, 793, 819
TspRI	CASTG	1 cut(s)	449
Tth111I	GACNNNGTC	1 cut(s)	473
XbaI	TCTAGA	1 cut(s)	817
XmiI	GTMKAC	1 cut(s)	468
XspI	CTAG	1 cut(s)	818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.