AT1G62050

ankyrin repeat family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
22936049 .. 22939024
2976 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G62050.1

Sequence Viewer

Length: 1875 bp
ATGGCTCGGCCTTCGTCGGCGTCTGCAACAACGGCAATTAGACCGGAAGATTACTCTCACAGTCCAGTTCATTACGCCGTCGTTTTGGGAGATCACGGTGCACTGACTCGTCTTCTCTCTTCCTTGCCGAAGCTAGGAGATCCTGAACAGATCCGAACAGAATCCGACTCACTGAGTCAAGAGCGAGTCGCGGATCAGATCTCCGCCGTGCTTGACCGTCGCGACGTTCCTTCACGCGAAACGCCTCTTCATCTGGCGGTTAGACTCGACGATTTGTTCGCGGCGAGGGCGATTTCGTCGGCCGGTGGTGATATTTCGTTACAGAATGCTTCTGGATGGAATCCGTTACAAGAGGCGTTTTGTCGCCGGAATTCTGAGGTTATGAAAGTGCTTTTACGGCATCACCACCGTTTAGCTTGGTGTAAATGGCGGCGGAGATTACCTCGTTTGATAGCTGTTCTCCGTCGTATGAGAGATTTTTACATGGAGATCTCTTTTCATTTCGAGAGCTCTGTGATTCCGTTCGTCGGAAAAATCGCTCCCTCTGATACTTACAAGATCTGGAAACGCGACGGTAACCTCCGTGCTGATACTACATTAGCCGGATTTGATGGTTTAAAAATTCAAAGAGCGGATCAAAGCTTTTTATTCCTCGGTGATGGTGATGAATCTCTAGATATTTCTCCTGGATCTTTGCTTGTACTGAATCGAGACGATCGGAAAATTCTCGACGCTTTTGAAAGTGCCGGAGCTCCGATTAGTGACTCCGACATCGCCGGATTCTGTTCTCAGTCAAGCTTATATCGTCCGGGAATGGATGTTACTAAAGCAGAGCTCGTCGGACGAACGAATTGGCGGCGGCAAGAGAAGATGGAGAACGTCGGAGAATGGAAAGCTAGGGTTTACGAAATCCAGAAAGTGACATTTAGTTTCAGATCTCGGAAAATTGTTACCGGAGATGGAAGCGAACAAGTTTTACCGTTGGAGTTAGACGAAGACGATGAAGGATTCTTAGTAGCTGAGAATCCGAGTTTCTTAGCTCCTCCGCCACGGTCACAGAGACGACACAGTAGCTTTGTTAAAGAAGATAGAGATTGGATCTCCGTTGGGAGAAAAAGCGTCGACGTTTATCCCTCCGCCGCACCACCGCCGCCGCGGCAATCTCAATCACCGCGAAGATCAGTGTCTCAATTTCAACCACCGAGAAGGTCAATGGCTCAGGTCCAGCCACCGAGAAGATCAGTAGCTCAAGCCCAGCCACCGAGAAGATCAGTGGCTCTACCTTCAACGGTGTCTCCGGTGAATCCTCCACCGTCTCCTCAGATCAAAGAGAAGGAATTTGTGAAAAGCTTGCATCCGTCAGTGTGGTTAACGGAACAATTTCCGTTAAAAACGGAGGAGCTGCTTCCGTTACTTGACATTTTAGCTAATAAAGTCAAAGCCGTCGCCAGAATGCGTGATCTTCTCACCACTAAGTTCCCGCCGGGAACTTTTCCAGTCAAGCTGTCTATTCCGGTGGTCCCTACGGTCAAAGTAGTCATCACATTCACCAAGTTTGTCGAGCTTCCGCCGGCGGAGACATTCTACACGCCGCTCTCAAGCCCAAGATTCCTCTACTCCGCCACCGCGGGTGAAGAAGACCATTCCGATGGCGAGAAACCCGATGCTCGAAATTCGATTTCACGGCCATCGACGTGGCTGAGACTAGCCACCGGAAAAGGCTCACATCGACGGGTAGAAGAGGAGGAGCAACAAACGCCGGACCCATTCGCTATACCAATTGGGTATAAATGGACAAGCATGAGTAGTAGTAATAGTAAGTCAGGTAATAGTAGTAAAATGAAGAAATCAAAGTCTACTAAGAGAACTAAGTAG

Protein Analysis

624

Amino Acids

69.95

Weight (kDa)

9.62

Isoelectric Point (pI)

66.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANKRD13_C PF11904 195 - 597 2.8e-101 ANKRD13 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013140)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 632, 1594
AccI GTMKAC 2 cut(s) 1122, 1856
AccII CGCG 8 cut(s) 191, 222, 237, 281, 570, 1156, 1174, 1628
AclWI GGATC 6 cut(s) 134, 145, 201, 642, 697, 1106
AcoI YGGCCR 2 cut(s) 300, 1685
AcsI RAATTY 5 cut(s) 370, 621, 723, 1337, 1672
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 1 cut(s) 702
AfiI CCNNNNNNNGG 2 cut(s) 134, 527
AgsI TTSAA 4 cut(s) 626, 740, 1196, 1287
AjiI CACGTC 1 cut(s) 1695
AjnI CCWGG 1 cut(s) 685
Alw21I GWGCWC 4 cut(s) 103, 512, 754, 837
Alw26I GTCTC 7 cut(s) 705, 1054, 1191, 1299, 1320, 1571, 1696
Alw44I GTGCAC 1 cut(s) 99
AlwI GGATC 6 cut(s) 134, 145, 201, 642, 697, 1106
AoxI GGCC 3 cut(s) 8, 300, 1685
ApaLI GTGCAC 1 cut(s) 99
ApeKI GCWGC 1 cut(s) 1402
ApoI RAATTY 5 cut(s) 370, 621, 723, 1337, 1672
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
Asp700I GAANNNNTTC 1 cut(s) 1380
AspS9I GGNCC 3 cut(s) 1222, 1519, 1762
AsuC2I CCSGG 2 cut(s) 810, 1485
AsuHPI GGTGA 9 cut(s) 320, 395, 668, 674, 1161, 1312, 1459, 1540, 1643
AvaII GGWCC 3 cut(s) 1222, 1519, 1762
BaeGI GKGCMC 1 cut(s) 103
BanII GRGCYC 3 cut(s) 512, 754, 837
BbsI GAAGAC 3 cut(s) 104, 1002, 1644
Bbv12I GWGCWC 4 cut(s) 103, 512, 754, 837
BbvI GCAGC 1 cut(s) 1389
BccI CCATC 7 cut(s) 330, 605, 653, 865, 953, 1643, 1696
BceAI ACGGC 6 cut(s) 48, 62, 191, 413, 1427, 1700
BciT130I CCWGG 1 cut(s) 687
BcnI CCSGG 2 cut(s) 810, 1485
BcoDI GTCTC 7 cut(s) 705, 1054, 1191, 1299, 1320, 1571, 1696
BfaI CTAG 4 cut(s) 134, 674, 897, 1706
BglI GCCNNNNNGGC 1 cut(s) 1156
BglII AGATCT 4 cut(s) 198, 489, 558, 935
Bme1390I CCNGG 3 cut(s) 687, 810, 1485
Bme18I GGWCC 3 cut(s) 1222, 1519, 1762
BmgBI CACGTC 1 cut(s) 1695
BmgT120I GGNCC 3 cut(s) 1222, 1519, 1762
BmiI GGNNCC 2 cut(s) 1521, 1764
BmrFI CCNGG 3 cut(s) 687, 810, 1485
BmsI GCATC 3 cut(s) 409, 1363, 1654
BpiI GAAGAC 3 cut(s) 104, 1002, 1644
BplI GAGNNNNNCTC 2 cut(s) 427, 459
Bpu10I CCTNAGC 1 cut(s) 1218
BpuEI CTTGAG 2 cut(s) 1233, 1582
BpuMI CCSGG 2 cut(s) 810, 1485
BsaHI GRCGYC 1 cut(s) 20
BsaJI CCNNGG 4 cut(s) 652, 1049, 1154, 1626
BsaWI WCCGGW 5 cut(s) 43, 953, 1297, 1513, 1712
BsaXI ACNNNNNCTCC 2 cut(s) 1279, 1309
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 527
Bse118I RCCGGY 2 cut(s) 302, 1570
Bse1I ACTGG 2 cut(s) 65, 1496
BseBI CCWGG 1 cut(s) 687
BseDI CCNNGG 4 cut(s) 652, 1049, 1154, 1626
BseGI GGATG 3 cut(s) 341, 823, 1354
BseLI CCNNNNNNNGG 2 cut(s) 134, 527
BseMII CTCAG 7 cut(s) 164, 366, 803, 1011, 1232, 1334, 1691
BseNI ACTGG 2 cut(s) 65, 1496
BseRI GAGGAG 5 cut(s) 1032, 1308, 1412, 1757, 1760
BseSI GKGCMC 1 cut(s) 103
BseX3I CGGCCG 1 cut(s) 300
BseXI GCAGC 1 cut(s) 1389
BseYI CCCAGC 1 cut(s) 1254
Bsh1236I CGCG 8 cut(s) 191, 222, 237, 281, 570, 1156, 1174, 1628
Bsh1285I CGRYCG 2 cut(s) 303, 718
BshFI GGCC 3 cut(s) 10, 302, 1687
BsiEI CGRYCG 2 cut(s) 303, 718
BsiHKAI GWGCWC 4 cut(s) 103, 512, 754, 837
BslFI GGGAC 1 cut(s) 1505
BslI CCNNNNNNNGG 2 cut(s) 134, 527
BsmAI GTCTC 7 cut(s) 705, 1054, 1191, 1299, 1320, 1571, 1696
BsmBI CGTCTC 3 cut(s) 705, 1054, 1320
BsmFI GGGAC 1 cut(s) 1505
BsmI GAATGC 2 cut(s) 331, 1458
BsnI GGCC 3 cut(s) 10, 302, 1687
Bsp1286I GDGCHC 4 cut(s) 103, 512, 754, 837
Bsp68I TCGCGA 1 cut(s) 222
BspANI GGCC 3 cut(s) 10, 302, 1687
BspCNI CTCAG 7 cut(s) 165, 367, 802, 1012, 1231, 1333, 1692
BspFNI CGCG 8 cut(s) 191, 222, 237, 281, 570, 1156, 1174, 1628
BspLI GGNNCC 2 cut(s) 1521, 1764
BspPI GGATC 6 cut(s) 134, 145, 201, 642, 697, 1106
BsrBI CCGCTC 2 cut(s) 632, 1594
BsrFI RCCGGY 2 cut(s) 302, 1570
BsrI ACTGG 2 cut(s) 65, 1496
BssAI RCCGGY 2 cut(s) 302, 1570
BssECI CCNNGG 4 cut(s) 652, 1049, 1154, 1626
BssNI GRCGYC 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 687
Bst6I CTCTTC 3 cut(s) 124, 252, 1734
BstACI GRCGYC 1 cut(s) 20
BstC8I GCNNGC 2 cut(s) 1352, 1572
BstDSI CCRYGG 3 cut(s) 1049, 1154, 1626
BstEII GGTNACC 1 cut(s) 575
BstF5I GGATG 3 cut(s) 341, 823, 1354
BstFNI CGCG 8 cut(s) 191, 222, 237, 281, 570, 1156, 1174, 1628
BstMAI GTCTC 7 cut(s) 705, 1054, 1191, 1299, 1320, 1571, 1696
BstMCI CGRYCG 2 cut(s) 303, 718
BstMWI GCNNNNNNNGC 5 cut(s) 32, 287, 397, 1156, 1756
BstNI CCWGG 1 cut(s) 687
BstPI GGTNACC 1 cut(s) 575
BstSCI CCNGG 3 cut(s) 685, 808, 1483
BstSLI GKGCMC 1 cut(s) 103
BstUI CGCG 8 cut(s) 191, 222, 237, 281, 570, 1156, 1174, 1628
BstV1I GCAGC 1 cut(s) 1389
BstV2I GAAGAC 3 cut(s) 104, 1002, 1644
BstX2I RGATCY 8 cut(s) 139, 150, 198, 489, 558, 689, 935, 1098
BstXI CCANNNNNNTGG 2 cut(s) 1649, 1695
BstYI RGATCY 8 cut(s) 139, 150, 198, 489, 558, 689, 935, 1098
BstZI CGGCCG 1 cut(s) 300
BsuRI GGCC 3 cut(s) 10, 302, 1687
BtgI CCRYGG 3 cut(s) 1049, 1154, 1626
BtgZI GCGATG 1 cut(s) 757
BtrI CACGTC 1 cut(s) 1695
BtsCI GGATG 3 cut(s) 341, 823, 1354
BtsIMutI CAGTG 5 cut(s) 101, 170, 1188, 1278, 1368
BtuMI TCGCGA 1 cut(s) 222
Cac8I GCNNGC 2 cut(s) 1352, 1572
Cfr10I RCCGGY 2 cut(s) 302, 1570
Cfr13I GGNCC 3 cut(s) 1222, 1519, 1762
Cfr42I CCGCGG 2 cut(s) 1157, 1629
CseI GACGC 3 cut(s) 9, 740, 1108
Csp6I GTAC 1 cut(s) 701
CviAII CATG 2 cut(s) 484, 1801
CviQI GTAC 1 cut(s) 701
DraI TTTAAA 1 cut(s) 618
EaeI YGGCCR 2 cut(s) 300, 1685
EagI CGGCCG 1 cut(s) 300
Eam1104I CTCTTC 3 cut(s) 124, 252, 1734
EarI CTCTTC 3 cut(s) 124, 252, 1734
EciI GGCGGA 7 cut(s) 193, 448, 1035, 1126, 1557, 1589, 1609
Ecl136II GAGCTC 3 cut(s) 510, 752, 835
EclXI CGGCCG 1 cut(s) 300
Eco24I GRGCYC 3 cut(s) 512, 754, 837
Eco47I GGWCC 3 cut(s) 1222, 1519, 1762
Eco52I CGGCCG 1 cut(s) 300
Eco53kI GAGCTC 3 cut(s) 510, 752, 835
Eco91I GGTNACC 1 cut(s) 575
EcoICRI GAGCTC 3 cut(s) 510, 752, 835
EcoO65I GGTNACC 1 cut(s) 575
EcoRI GAATTC 1 cut(s) 370
EcoRII CCWGG 1 cut(s) 685
EcoT38I GRGCYC 3 cut(s) 512, 754, 837
Esp3I CGTCTC 3 cut(s) 705, 1054, 1320
FaeI CATG 2 cut(s) 487, 1804
FaiI YATR 7 cut(s) 383, 470, 485, 802, 1775, 1788, 1802
FaqI GGGAC 1 cut(s) 1505
FatI CATG 2 cut(s) 483, 1800
FauI CCCGC 2 cut(s) 1488, 1621
FblI GTMKAC 2 cut(s) 1122, 1856
FokI GGATG 3 cut(s) 348, 830, 1341
FriOI GRGCYC 3 cut(s) 512, 754, 837
FspBI CTAG 4 cut(s) 134, 674, 897, 1706
GsaI CCCAGC 1 cut(s) 1258
HaeIII GGCC 3 cut(s) 10, 302, 1687
HgaI GACGC 3 cut(s) 9, 740, 1108
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 2 cut(s) 487, 1804
HincII GTYRAC 2 cut(s) 1123, 1371
HindII GTYRAC 2 cut(s) 1123, 1371
HindIII AAGCTT 3 cut(s) 640, 796, 1348
HpaI GTTAAC 1 cut(s) 1371
HphI GGTGA 9 cut(s) 320, 395, 668, 674, 1161, 1312, 1459, 1540, 1643
Hpy166II GTNNAC 5 cut(s) 101, 904, 1123, 1371, 1857
Hpy8I GTNNAC 5 cut(s) 101, 904, 1123, 1371, 1857
HpyAV CCTTC 6 cut(s) 21, 240, 998, 1200, 1293, 1327
HpyCH4IV ACGT 4 cut(s) 225, 879, 1125, 1694
HpyCH4V TGCA 3 cut(s) 26, 101, 1354
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 287, 397, 1156, 1756
HpySE526I ACGT 4 cut(s) 225, 879, 1125, 1694
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 2 cut(s) 487, 1804
KroI GCCGGC 1 cut(s) 1570
KroNI GCCGGC 1 cut(s) 1572
KspAI GTTAAC 1 cut(s) 1371
KspI CCGCGG 2 cut(s) 1157, 1629
LmnI GCTCC 6 cut(s) 544, 749, 757, 1045, 1399, 1747
Lsp1109I GCAGC 1 cut(s) 1389
LweI GCATC 3 cut(s) 409, 1363, 1654
MaeI CTAG 4 cut(s) 134, 674, 897, 1706
MaeII ACGT 4 cut(s) 225, 879, 1125, 1694
MaeIII GTNAC 9 cut(s) 318, 345, 575, 761, 820, 919, 949, 1053, 1410
MbiI CCGCTC 2 cut(s) 632, 1594
MfeI CAATTG 1 cut(s) 1779
MflI RGATCY 8 cut(s) 139, 150, 198, 489, 558, 689, 935, 1098
MhlI GDGCHC 4 cut(s) 103, 512, 754, 837
MlyI GAGTC 6 cut(s) 100, 161, 184, 195, 258, 758
MmeI TCCRAC 6 cut(s) 189, 508, 792, 820, 862, 963
MreI CGCCGGCG 1 cut(s) 1570
MroNI GCCGGC 1 cut(s) 1570
MroXI GAANNNNTTC 1 cut(s) 1380
MseI TTAA 4 cut(s) 617, 1080, 1370, 1388
MslI CAYNNNNRTG 2 cut(s) 1647, 1693
MspA1I CMGCKG 2 cut(s) 1156, 1628
MspR9I CCNGG 3 cut(s) 687, 810, 1485
MunI CAATTG 1 cut(s) 1779
Mva1269I GAATGC 2 cut(s) 331, 1458
MvaI CCWGG 1 cut(s) 687
MvnI CGCG 8 cut(s) 191, 222, 237, 281, 570, 1156, 1174, 1628
MwoI GCNNNNNNNGC 5 cut(s) 32, 287, 397, 1156, 1756
NaeI GCCGGC 1 cut(s) 1572
NciI CCSGG 2 cut(s) 810, 1485
NgoMIV GCCGGC 1 cut(s) 1570
NlaIII CATG 2 cut(s) 487, 1804
NlaIV GGNNCC 2 cut(s) 1521, 1764
NmuCI GTSAC 3 cut(s) 761, 919, 1053
NruI TCGCGA 1 cut(s) 222
PctI GAATGC 2 cut(s) 331, 1458
PdiI GCCGGC 1 cut(s) 1572
PdmI GAANNNNTTC 1 cut(s) 1380
PfoI TCCNGGA 2 cut(s) 685, 808
Ple19I CGATCG 1 cut(s) 718
PleI GAGTC 6 cut(s) 100, 161, 183, 194, 258, 758
PpsI GAGTC 6 cut(s) 100, 161, 183, 194, 258, 758
Psp124BI GAGCTC 3 cut(s) 512, 754, 837
Psp6I CCWGG 1 cut(s) 685
PspEI GGTNACC 1 cut(s) 575
PspFI CCCAGC 1 cut(s) 1254
PspGI CCWGG 1 cut(s) 685
PspN4I GGNNCC 2 cut(s) 1521, 1764
PspPI GGNCC 3 cut(s) 1222, 1519, 1762
PsrI GAACNNNNNNTAC 2 cut(s) 960, 992
PsuI RGATCY 8 cut(s) 139, 150, 198, 489, 558, 689, 935, 1098
PvuI CGATCG 1 cut(s) 718
RruI TCGCGA 1 cut(s) 222
RsaI GTAC 1 cut(s) 702
RsaNI GTAC 1 cut(s) 701
RseI CAYNNNNRTG 2 cut(s) 1647, 1693
SacI GAGCTC 3 cut(s) 512, 754, 837
SacII CCGCGG 2 cut(s) 1157, 1629
SalI GTCGAC 1 cut(s) 1121
SaqAI TTAA 4 cut(s) 617, 1080, 1370, 1388
Sau96I GGNCC 3 cut(s) 1222, 1519, 1762
SchI GAGTC 6 cut(s) 100, 161, 184, 195, 258, 758
ScrFI CCNGG 3 cut(s) 687, 810, 1485
SduI GDGCHC 4 cut(s) 103, 512, 754, 837
SfaNI GCATC 3 cut(s) 409, 1363, 1654
Sfr303I CCGCGG 2 cut(s) 1157, 1629
SgrAI CRCCGGYG 1 cut(s) 1570
SgrBI CCGCGG 2 cut(s) 1157, 1629
SgrDI CGTCGACG 1 cut(s) 1121
SinI GGWCC 3 cut(s) 1222, 1519, 1762
SmiMI CAYNNNNRTG 2 cut(s) 1647, 1693
SmlI CTYRAG 2 cut(s) 1248, 1597
SmoI CTYRAG 2 cut(s) 1248, 1597
SspMI CTAG 4 cut(s) 134, 674, 897, 1706
SstI GAGCTC 3 cut(s) 512, 754, 837
StyD4I CCNGG 3 cut(s) 685, 808, 1483
TaiI ACGT 4 cut(s) 228, 882, 1128, 1697
TatI WGTACW 1 cut(s) 700
TauI GCSGC 9 cut(s) 284, 433, 859, 862, 1142, 1153, 1156, 1159, 1594
Tru1I TTAA 4 cut(s) 617, 1080, 1370, 1388
Tru9I TTAA 4 cut(s) 617, 1080, 1370, 1388
TscAI CASTG 5 cut(s) 108, 177, 1188, 1278, 1368
TseFI GTSAC 3 cut(s) 761, 919, 1053
TseI GCWGC 1 cut(s) 1402
Tsp45I GTSAC 3 cut(s) 761, 919, 1053
TspDTI ATGAA 7 cut(s) 59, 239, 398, 488, 681, 1017, 1856
TspRI CASTG 5 cut(s) 108, 177, 1188, 1278, 1368
VneI GTGCAC 1 cut(s) 99
VpaK11BI GGWCC 3 cut(s) 1222, 1519, 1762
XapI RAATTY 5 cut(s) 370, 621, 723, 1337, 1672
XbaI TCTAGA 1 cut(s) 673
XmiI GTMKAC 2 cut(s) 1122, 1856
XmnI GAANNNNTTC 1 cut(s) 1380
XspI CTAG 4 cut(s) 134, 674, 897, 1706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.