AT1G62440

Leucine-rich repeat

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
23112933 .. 23115293
2361 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G62440.1

Sequence Viewer

Length: 2361 bp
ATGTTGTTGTTTCCTTCTACTTCTTTACGTCTCTTCTTCTTTCTCTTCCTCTTGTTCTCCTCTTGTTTCTTACAGATTAGAGGAGATGATGATGATGATGATATAAGCGATGATAATATCAAAGTCGACCCGAGTCTCAAGTTCGAAAACCCAAGTCTTCGACAAGCCTACATTGCTCTTCAATCATGGAAACAAGCTATTTTCTCTGATCCTTTTAACTTCACTGCTAATTGGAATGGCTCTGATGTTTGTTCCTACAACGGTATCTTTTGTGCTCCTTCTCCTTCTAGTCCGAAAACTCGAGTTGTTGCGGGTATTGACCTTAACCATGCGGACATGGCTGGTTATTTACCTCGTGAGCTTGGTCTTCTCACTGATCTTGCTCTCTTTCATCTCAACTCAAACCGCTTTTGTGGAGAAGTACCTCTCACGTTTAAACACATGAAGCTTCTCTTCGAGCTTGACTTAAGTAACAACCGTTTTGTTGGGAAGTTCCCTAATGTTGTCTTGTCTTTACCTTCCCTCAAGTTCTTGGATCTTCGGTACAACGAGTTTGAAGGTAGTATCCCTTCGAAGCTATTCGATAAAGAGCTCGACGCGATATTCTTAAACCATAACCGGTTTATGTTTGGGATACCCGAAAACATGGGAAACTCTCCGGTGTCTGCTCTAGTTCTTGCGGATAATGATCTTGGAGGTTGCATACCGGGAAGTATCGGTTTAATGGGAAAGACTCTCAACGAGATCATCCTCTCTAACGATAACTTAACCGGTTGCTTACCACCACAGATTGGGAATCTCAAGAATGTGACGGTTTTCGATATCAGTTTCAACCGTTTAAGCGGTCCATTGCCATCAAGCATTGGAAACATGAAGAGTTTGGAACAGCTCAATGTTGCTAACAATAGATTCACAGGAGTTATACCAAGCAGCATTTGTCAGCTCTCTAACCTTGAGAACTTCACTTATTCTTCCAACTTCTTCACCGGTGATGCCCCGAGATGTGTGGCTCTTTTGGGAGACAATGTGGTGGTTAATGGCTCGATGAATTGTATTGATGGTAAAGAAGATCAAAGATCGTCTAAAGAGTGTTCTTCTCCAGCCTCACGCTCTGTTGATTGTAGTAAGTTTGGGTGTAACAACTTTTTCTCTCCTCCACCACCGTCTTTTAAGATGTCACCCACCGTTCGAGTACTTCCTCCACCGCCTCCGTCTTCCAAGATGTCGCCTACATTTAGAGCAACTCCGCCACCGCCGTCTTCTAAGATGTCACCATCTTTTAGAGCAACTCCGCCACCGCCTTCTTCTAAAATGTCGCCTTCTTTTAGAGCAACTCCGCCACCACCTTCTTCTAAGATGTCGCCTTCCGTCAAGGCGTATCCTCCTCCTCCACCACCGCCAGAGTATGAGCCATCTCCGCCTCCTCCTTCTTCCGAAATGTCACCTTCCGTTAGGGCATACCCTCCACCACCACCACTATCACCACCACCACCATCTCCTCCTCCACCATACATCTACTCATCTCCTCCACCACCGTCACCATCTCCTCCTCCGCCATACATTTACTCATCTCCTCCGCCCGTAGTTAACTGTCCACCCACAACACAAAGTCCCCCACCTCCGAAATATGAGCAAACTCCTTCACCAAGGGAATACTATCCATCACCTTCACCACCTTACTACCAATACACGTCTTCTCCGCCACCGCCTACTTACTACGCCACTCAATCTCCACCGCCACCACCACCGCCTACTTACTACGCTGTTCAATCTCCCCCGCCACCACCACCGGTATACTACCCACCTGTAACAGCAAGTCCTCCTCCACCACCGGTCTACTATACACCGGTTATACAATCTCCTCCTCCTCCACCGGTTTACTATTCACCTGTTACCCAAAGTCCTCCACCACCACCACCGGTTTACTATCCCCCGGTAACACAAAGTCCACCACCATCACCGGTCTACTATCCGCCAGTTACCCAAAGTCCACCTCCCCCACCAGTTTATTATCTTCCAGTAACTCAAAGCCCTCCACCGCCATCACCAGTCTACTATCCACCGGTAGCAAAAAGCCCTCCACCACCATCACCAGTCTACTATCCACCGGTAACACAAAGCCCACCTCCACCGTCAACACCAGTTGAGTACCATCCACCGGCAAGCCCAAACCAGTCTCCACCACCGGAGTATCAATCACCACCACCAAAGGGATGCAACGACAGTCCAAGTAACGACCATCACTACCAAACACCAACACCACCTTCTCTGCCGCCTCCATATTACGAAGACACACCTCTTCCGCCTATCCGCGGTGTCTCTTATGCGTCTCCTCCTCCACCATCAATCCCATACTACTAA

Protein Analysis

786

Amino Acids

85.48

Weight (kDa)

5.88

Isoelectric Point (pI)

98.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 129 - 184 1.8e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017485)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62440
fragaria_vesca FvH4_4g00070
malus_domestica MD04G1000500.v1.1
prunus_persica Prupe.1G000500_v2.0.a1
rosa_laevigata RLG00000010279
rosa_multiflora Rmu_sc0006822.1_g000025
rosa_roxburghii Rroxscaffold_5G00332680
rosa_rugosa Rorug03G0296900
rosa_samantha Rh4BG000400 Rh4CG000300 Rh4DG000400
rosa_wichuraiana Rw4G000850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 791
AccI GTMKAC 6 cut(s) 126, 1794, 1836, 1965, 2052, 2097
AccII CGCG 2 cut(s) 599, 2313
AclWI GGATC 2 cut(s) 203, 543
AfaI GTAC 4 cut(s) 423, 545, 1194, 2150
AfiI CCNNNNNNNGG 4 cut(s) 791, 2158, 2210, 2312
AflII CTTAAG 1 cut(s) 466
AflIII ACRYGT 1 cut(s) 1689
AgsI TTSAA 4 cut(s) 182, 557, 832, 1769
AjiI CACGTC 1 cut(s) 1692
AjuI GAANNNNNNNTTGG 2 cut(s) 2248, 2280
AluBI AGCT 8 cut(s) 197, 361, 448, 460, 577, 592, 889, 943
AluI AGCT 8 cut(s) 197, 361, 448, 460, 577, 592, 889, 943
Alw21I GWGCWC 2 cut(s) 277, 594
Alw26I GTCTC 6 cut(s) 35, 140, 1014, 2181, 2323, 2334
AlwI GGATC 2 cut(s) 203, 543
Ama87I CYCGRG 3 cut(s) 130, 300, 997
ApeKI GCWGC 1 cut(s) 930
Asp700I GAANNNNTTC 1 cut(s) 578
AspS9I GGNCC 1 cut(s) 845
AsuC2I CCSGG 2 cut(s) 708, 1934
AsuII TTCGAA 2 cut(s) 144, 572
AvaI CYCGRG 3 cut(s) 130, 300, 997
AvaII GGWCC 1 cut(s) 845
BaeI ACNNNNGTAYC 4 cut(s) 247, 280, 2174, 2207
BanII GRGCYC 1 cut(s) 594
BarI GAAGNNNNNNTAC 2 cut(s) 553, 585
BauI CACGAG 1 cut(s) 354
BbsI GAAGAC 6 cut(s) 149, 359, 1206, 1251, 1686, 2295
Bbv12I GWGCWC 2 cut(s) 277, 594
BbvI GCAGC 1 cut(s) 942
BceAI ACGGC 1 cut(s) 1240
BciVI GTATCC 3 cut(s) 575, 627, 1389
BcnI CCSGG 2 cut(s) 708, 1934
BcoDI GTCTC 6 cut(s) 35, 140, 1014, 2181, 2323, 2334
BfaI CTAG 2 cut(s) 288, 671
BfrI CTTAAG 1 cut(s) 466
BfuI GTATCC 3 cut(s) 575, 627, 1389
BisI GCNGC 2 cut(s) 931, 2273
BlsI GCNGC 2 cut(s) 932, 2274
BmcAI AGTACT 1 cut(s) 1194
Bme1390I CCNGG 2 cut(s) 708, 1934
Bme18I GGWCC 1 cut(s) 845
BmeT110I CYCGRG 3 cut(s) 130, 300, 997
BmgBI CACGTC 1 cut(s) 1692
BmgT120I GGNCC 1 cut(s) 845
BmrFI CCNGG 2 cut(s) 708, 1934
BmsI GCATC 2 cut(s) 982, 2204
BoxI GACNNNNGTC 1 cut(s) 132
BpiI GAAGAC 6 cut(s) 149, 359, 1206, 1251, 1686, 2295
BpmI CTGGAG 1 cut(s) 1083
Bpu14I TTCGAA 2 cut(s) 144, 572
BpuEI CTTGAG 4 cut(s) 122, 509, 785, 974
BpuMI CCSGG 2 cut(s) 708, 1934
BsaBI GATNNNNATC 1 cut(s) 687
BsaJI CCNNGG 3 cut(s) 1646, 1932, 2311
BsaXI ACNNNNNCTCC 6 cut(s) 1011, 1041, 1681, 1711, 1714, 1744
Bsc4I CCNNNNNNNGG 4 cut(s) 791, 2158, 2210, 2312
Bse1I ACTGG 7 cut(s) 1976, 2003, 2018, 2048, 2093, 2141, 2173
Bse3DI GCAATG 2 cut(s) 171, 848
Bse8I GATNNNNATC 1 cut(s) 687
BseDI CCNNGG 3 cut(s) 1646, 1932, 2311
BseGI GGATG 3 cut(s) 747, 2152, 2219
BseJI GATNNNNATC 1 cut(s) 687
BseLI CCNNNNNNNGG 4 cut(s) 791, 2158, 2210, 2312
BseMI GCAATG 2 cut(s) 171, 848
BseNI ACTGG 7 cut(s) 1976, 2003, 2018, 2048, 2093, 2141, 2173
BseXI GCAGC 1 cut(s) 942
Bsh1236I CGCG 2 cut(s) 599, 2313
BsiHKAI GWGCWC 2 cut(s) 277, 594
BsiHKCI CYCGRG 3 cut(s) 130, 300, 997
BslFI GGGAC 1 cut(s) 1596
BslI CCNNNNNNNGG 4 cut(s) 791, 2158, 2210, 2312
BsmAI GTCTC 6 cut(s) 35, 140, 1014, 2181, 2323, 2334
BsmBI CGTCTC 2 cut(s) 35, 2334
BsmFI GGGAC 1 cut(s) 1596
BsoBI CYCGRG 3 cut(s) 130, 300, 997
Bsp119I TTCGAA 2 cut(s) 144, 572
Bsp1286I GDGCHC 2 cut(s) 277, 594
Bsp143I GATC 7 cut(s) 208, 376, 535, 688, 744, 1069, 1076
BspFNI CGCG 2 cut(s) 599, 2313
BspPI GGATC 2 cut(s) 203, 543
BspQI GCTCTTC 1 cut(s) 183
BspT104I TTCGAA 2 cut(s) 144, 572
BspTI CTTAAG 1 cut(s) 466
BsrDI GCAATG 2 cut(s) 171, 848
BsrI ACTGG 7 cut(s) 1976, 2003, 2018, 2048, 2093, 2141, 2173
BssECI CCNNGG 3 cut(s) 1646, 1932, 2311
BssMI GATC 7 cut(s) 208, 376, 535, 688, 744, 1069, 1076
BssNAI GTATAC 1 cut(s) 1795
BssSI CACGAG 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 1646
Bst1107I GTATAC 1 cut(s) 1795
Bst2BI CACGAG 1 cut(s) 354
Bst6I CTCTTC 6 cut(s) 38, 50, 183, 458, 869, 2304
BstAFI CTTAAG 1 cut(s) 466
BstBI TTCGAA 2 cut(s) 144, 572
BstC8I GCNNGC 1 cut(s) 2164
BstDEI CTNAG 2 cut(s) 1263, 1353
BstDSI CCRYGG 1 cut(s) 2311
BstF5I GGATG 3 cut(s) 747, 2152, 2219
BstFNI CGCG 2 cut(s) 599, 2313
BstKTI GATC 7 cut(s) 211, 379, 538, 691, 747, 1072, 1079
BstMAI GTCTC 6 cut(s) 35, 140, 1014, 2181, 2323, 2334
BstMBI GATC 7 cut(s) 208, 376, 535, 688, 744, 1069, 1076
BstMWI GCNNNNNNNGC 3 cut(s) 173, 338, 1417
BstPAI GACNNNNGTC 1 cut(s) 132
BstSCI CCNGG 2 cut(s) 706, 1932
BstUI CGCG 2 cut(s) 599, 2313
BstV1I GCAGC 1 cut(s) 942
BstV2I GAAGAC 6 cut(s) 149, 359, 1206, 1251, 1686, 2295
BstX2I RGATCY 1 cut(s) 535
BstYI RGATCY 1 cut(s) 535
BstZ17I GTATAC 1 cut(s) 1795
BsuI GTATCC 3 cut(s) 575, 627, 1389
BtgI CCRYGG 1 cut(s) 2311
BtgZI GCGATG 1 cut(s) 123
BtrI CACGTC 1 cut(s) 1692
BtsCI GGATG 3 cut(s) 747, 2152, 2219
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 2 cut(s) 222, 372
Cac8I GCNNGC 1 cut(s) 2164
Cfr13I GGNCC 1 cut(s) 845
Cfr42I CCGCGG 1 cut(s) 2314
CseI GACGC 2 cut(s) 605, 2316
Csp6I GTAC 4 cut(s) 422, 544, 1193, 2149
CviAII CATG 6 cut(s) 186, 329, 337, 442, 646, 871
CviQI GTAC 4 cut(s) 422, 544, 1193, 2149
DdeI CTNAG 2 cut(s) 1263, 1353
DpnI GATC 7 cut(s) 210, 378, 537, 690, 746, 1071, 1078
DpnII GATC 7 cut(s) 208, 376, 535, 688, 744, 1069, 1076
DraI TTTAAA 1 cut(s) 436
Eam1104I CTCTTC 6 cut(s) 38, 50, 183, 458, 869, 2304
EarI CTCTTC 6 cut(s) 38, 50, 183, 458, 869, 2304
EciI GGCGGA 9 cut(s) 1236, 1281, 1326, 1407, 1542, 1566, 1689, 1962, 2292
Ecl136II GAGCTC 1 cut(s) 592
Eco130I CCWWGG 1 cut(s) 1646
Eco24I GRGCYC 1 cut(s) 594
Eco32I GATATC 1 cut(s) 823
Eco47I GGWCC 1 cut(s) 845
Eco53kI GAGCTC 1 cut(s) 592
Eco88I CYCGRG 3 cut(s) 130, 300, 997
EcoICRI GAGCTC 1 cut(s) 592
EcoRV GATATC 1 cut(s) 823
EcoT14I CCWWGG 1 cut(s) 1646
EcoT38I GRGCYC 1 cut(s) 594
ErhI CCWWGG 1 cut(s) 1646
Esp3I CGTCTC 2 cut(s) 35, 2334
FaeI CATG 6 cut(s) 189, 332, 340, 445, 649, 874
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FaqI GGGAC 1 cut(s) 1596
FatI CATG 6 cut(s) 185, 328, 336, 441, 645, 870
FauI CCCGC 2 cut(s) 304, 1785
FblI GTMKAC 6 cut(s) 126, 1794, 1836, 1965, 2052, 2097
Fnu4HI GCNGC 2 cut(s) 931, 2273
FokI GGATG 3 cut(s) 734, 2139, 2226
FriOI GRGCYC 1 cut(s) 594
Fsp4HI GCNGC 2 cut(s) 931, 2273
FspBI CTAG 2 cut(s) 288, 671
GluI GCNGC 2 cut(s) 931, 2273
GsuI CTGGAG 1 cut(s) 1083
HgaI GACGC 2 cut(s) 605, 2316
Hin1II CATG 6 cut(s) 189, 332, 340, 445, 649, 874
HincII GTYRAC 3 cut(s) 127, 1588, 2136
HindII GTYRAC 3 cut(s) 127, 1588, 2136
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 4 cut(s) 133, 733, 796, 909
HpaI GTTAAC 1 cut(s) 1588
Hpy188I TCNGA 5 cut(s) 208, 244, 294, 1435, 1623
Hpy188III TCNNGA 2 cut(s) 356, 802
Hpy99I CGWCG 1 cut(s) 599
HpyCH4IV ACGT 3 cut(s) 28, 431, 1691
HpyCH4V TGCA 2 cut(s) 702, 2217
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 338, 1417
HpyF3I CTNAG 2 cut(s) 1263, 1353
HpySE526I ACGT 3 cut(s) 28, 431, 1691
Hsp92II CATG 6 cut(s) 189, 332, 340, 445, 649, 874
KspAI GTTAAC 1 cut(s) 1588
KspI CCGCGG 1 cut(s) 2314
Kzo9I GATC 7 cut(s) 208, 376, 535, 688, 744, 1069, 1076
LguI GCTCTTC 1 cut(s) 183
LmnI GCTCC 1 cut(s) 280
Lsp1109I GCAGC 1 cut(s) 942
LweI GCATC 2 cut(s) 982, 2204
MaeI CTAG 2 cut(s) 288, 671
MaeII ACGT 3 cut(s) 28, 431, 1691
MalI GATC 7 cut(s) 210, 378, 537, 690, 746, 1071, 1078
MboI GATC 7 cut(s) 208, 376, 535, 688, 744, 1069, 1076
MflI RGATCY 1 cut(s) 535
MhlI GDGCHC 2 cut(s) 277, 594
MluCI AATT 2 cut(s) 229, 1048
MlyI GAGTC 2 cut(s) 142, 727
MmeI TCCRAC 1 cut(s) 999
MroXI GAANNNNTTC 1 cut(s) 578
MspA1I CMGCKG 1 cut(s) 2313
MspCI CTTAAG 1 cut(s) 466
MspR9I CCNGG 2 cut(s) 708, 1934
MssI GTTTAAAC 1 cut(s) 436
MvnI CGCG 2 cut(s) 599, 2313
MwoI GCNNNNNNNGC 3 cut(s) 173, 338, 1417
NciI CCSGG 2 cut(s) 708, 1934
NdeII GATC 7 cut(s) 208, 376, 535, 688, 744, 1069, 1076
NlaIII CATG 6 cut(s) 189, 332, 340, 445, 649, 874
NmuCI GTSAC 5 cut(s) 808, 1176, 1269, 1440, 1536
NspV TTCGAA 2 cut(s) 144, 572
PaeR7I CTCGAG 1 cut(s) 300
PciSI GCTCTTC 1 cut(s) 183
PdmI GAANNNNTTC 1 cut(s) 578
PfeI GAWTC 2 cut(s) 796, 909
PflMI CCANNNNNTGG 1 cut(s) 791
PkrI GCNGC 2 cut(s) 932, 2274
PleI GAGTC 2 cut(s) 141, 727
PmeI GTTTAAAC 1 cut(s) 436
PpsI GAGTC 2 cut(s) 141, 727
PshAI GACNNNNGTC 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 594
PspPI GGNCC 1 cut(s) 845
PspXI VCTCGAGB 1 cut(s) 300
PsuI RGATCY 1 cut(s) 535
RsaI GTAC 4 cut(s) 423, 545, 1194, 2150
RsaNI GTAC 4 cut(s) 422, 544, 1193, 2149
SacI GAGCTC 1 cut(s) 594
SacII CCGCGG 1 cut(s) 2314
SalI GTCGAC 1 cut(s) 125
SapI GCTCTTC 1 cut(s) 183
SatI GCNGC 2 cut(s) 931, 2273
Sau3AI GATC 7 cut(s) 208, 376, 535, 688, 744, 1069, 1076
Sau96I GGNCC 1 cut(s) 845
ScaI AGTACT 1 cut(s) 1194
SchI GAGTC 2 cut(s) 142, 727
ScrFI CCNGG 2 cut(s) 708, 1934
SduI GDGCHC 2 cut(s) 277, 594
SfaNI GCATC 2 cut(s) 982, 2204
Sfr274I CTCGAG 1 cut(s) 300
Sfr303I CCGCGG 1 cut(s) 2314
SfuI TTCGAA 2 cut(s) 144, 572
SgrAI CRCCGGYG 1 cut(s) 986
SgrBI CCGCGG 1 cut(s) 2314
SinI GGWCC 1 cut(s) 845
SlaI CTCGAG 1 cut(s) 300
SmlI CTYRAG 6 cut(s) 137, 300, 466, 524, 800, 953
SmoI CTYRAG 6 cut(s) 137, 300, 466, 524, 800, 953
Sse9I AATT 2 cut(s) 229, 1048
SspMI CTAG 2 cut(s) 288, 671
SstI GAGCTC 1 cut(s) 594
StyD4I CCNGG 2 cut(s) 706, 1932
StyI CCWWGG 1 cut(s) 1646
TaiI ACGT 3 cut(s) 31, 434, 1694
TasI AATT 2 cut(s) 229, 1048
TatI WGTACW 1 cut(s) 1192
TauI GCSGC 1 cut(s) 2275
TfiI GAWTC 2 cut(s) 796, 909
TscAI CASTG 2 cut(s) 229, 379
TseFI GTSAC 5 cut(s) 808, 1176, 1269, 1440, 1536
TseI GCWGC 1 cut(s) 930
Tsp45I GTSAC 5 cut(s) 808, 1176, 1269, 1440, 1536
TspDTI ATGAA 4 cut(s) 380, 458, 887, 1061
TspGWI ACGGA 3 cut(s) 1200, 1357, 1438
TspRI CASTG 2 cut(s) 229, 379
Van91I CCANNNNNTGG 1 cut(s) 791
Vha464I CTTAAG 1 cut(s) 466
VpaK11BI GGWCC 1 cut(s) 845
XhoI CTCGAG 1 cut(s) 300
XmiI GTMKAC 6 cut(s) 126, 1794, 1836, 1965, 2052, 2097
XmnI GAANNNNTTC 1 cut(s) 578
XspI CTAG 2 cut(s) 288, 671
ZrmI AGTACT 1 cut(s) 1194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.