Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0017485

Physical Location & Seq

Genomic Coordinates Forward (+)

65117582 .. 65119951

Gene Structure 2370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010279

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2370 bp

ATGTCTCGTCTTCTTTGTCGTCTGTCTTTCTTGCTCCTCCTCCTCCTCCACATCTGCTACGCTGCTGCTGCTGATGACTCACTCAAATTTGAGAACCCAAGGCTGGCCAAGGCTTACACCGCCCTCCAAGCCTGGAAGTCTGCCATCTTCTCGGACCCATTCAACTTCACCTCGAACTGGAACGGGTCGGACGTGTGCTCCTACATGGGAGTCTTCTGCACCGCCCTCCCCTCAATCGGGCGTGTTGTCGCCGGCATTGACCTCAACCACGCTGACATTGCCGGCTACCTGCCTCCAGAGCTAGGCCTCCTCTCCGACCTCGCTCTCTTCCACATCAACTCCAACCGCTTCTGCGGCGTCGTCCCCACAAGCTTTCGGCGACTGAAGCTGCTCCATGAGCTGGATCTCAGCAACAACCGCTTTGTGGGGAACTTCCCCAAAGTGGTGCTCTCCTTGCCTTCCCTCAAGTACTTGGATCTCCGTTTTAACGAGTTCGAAGGCTCCGTTCCTTCCCAGCTCTTCGACAAGGATCTCGATGCCATTTTCCTCAACGACAACAGGTTCCGCTTCGGCATCCCTCAGAATCTCGGAAACTCGCCGGTTTCGGTGCTGGTGTTGGCCAACAATAATCTTGGGGGTTGCATTCCAGGTAGCATCGGCAACATGTGGAAGACGCTCAACGAGATCATTCTGTTGAATGACAATCTCACCGGCTGCTTGCCTCCCCAGATCGGCCGCCTACGCAATCTCACCGTCTTTGATGTGAGCTTCAACCAGCTTCAAGGCCCTCTGCCCTCCGCCTCCATAGCCAAAATGAAGAGCTTGGAGGAGCTGGACGTCGCCCATAACAGATTCACCGGTGTAATACCAGCCAGCATTTGCCAATTGCCAGCCTTGCACAACTTCACCTATTCCTTCAACTACTTCACCGGAGAGGCTCCTGCTTGCACTGCAACTCCTGTCTCTCATAATGGTAGCAAGAACTGCATTCCTGGCAAGTTGGATCAAAGAACTACTAGGGAATGTGCTTCCCCAGCTGCACGTCCCGTGGACTGCAGCAAGCTCAAATGCGGAGGTGGAGGAGGAGGCGGCCGCGGCGGGTCTGTCACAAAGCCGCGCCCTCCTCGGGCTTCAACACCTCCATCGCAAAGAATTCCTGTTCCTAACGGCGCTCCTCCTCCACCCCCTCCGACTTCAAAGTCATCGCCTTCCACTAGATCACATCCTCCACCGCCAATATCAACATCAACATCACCCCCGCCTTCTTCACCTTCACCTTCACCTTCACCCTCCAAGTCAAAGCCGCCTTCATCTCCTCCACCACCTACTGAAAAAGTATCACCCAGGACTCATCTTCATGTTCCTCCACCCCCACCTACCCAAAACGTATCACCAAGTACCCATCTAGCTCCACCTCCCCCCAGTTCGACCCATTTCAACTATTCGTCCCCACCACTAGTACCAGTACCTGCACCAGCTGTACCACCGGTTTACCATGCCTCCCCGCCTGATCATCACTCTCATATAGTGCCTCCATCATCCCCGTCACCATCACCACCAAGTTATCATTCTTATGCTTCACCACCACCGCCGCCGCCTCCACAACAGTCTGTTGAGATTCCAACTCCTGCCCCACCATCACCACAACACTACTACTCACCGCATGTCCCACCAACAGAAGCTCCAAGCTACCAACATTCTTACAGTTCACCACCTCCACCCCTGTCACCGCCTCCGCCACAGTACTCTTCCCATGTCCCATCTCCAAACTATCATCATAGTCCGGGTTACACTTCACCTCCTCCACCTCCGCCCCCGGCCAATGAACATTATACAAAAGCACCACCACCTTGGCACTCTCCCGAGCATTATTCCCCACCCAAAACAGCTGATAGTCCACCTCCGCCCCCGGCCAAGGAACATTATACAAAAGCTCCACCACCTTATTGGCACACTCCCGAGCATCATTCGCCACCCAAAACAGCTGCTAGTCCGCCTCCGCCTCCGACCAATGAGCATTATACAAATGCACCACCACCTTGGCACACGCCCGAGCATTATTCACCACCCAAAACAGCTGCAAGTCCACCTCCCCCTCCCCCATCAGCTCCTAATTCACCGACCGAGCCATCACCTTCCCATCCTCTGCCGCCCATAGGCTGCATCATTCCAGCACCAATTCTGCCACCTCCACAAAGCCATCACCACTCACCTCCTCAACAATGGCATCATCCACCACCACCATCATCATCGCATCAACAACCTCCTCCACATGGTGAGCCCCCCAAGTTTGATAACAACCCTCCGCTTCCACCAGTGATAGGAGTCTCATATGCATCTCCTCCTCCTCCTGCAATTCCTTACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0005198 GO:0005199 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0007275 GO:0008150 GO:0009505 GO:0009506 GO:0009653 GO:0009826 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016043 GO:0016049 GO:0022622 GO:0030054 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044464 GO:0048364 GO:0048468 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0055044 GO:0060560 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8

Protein Analysis

790

Amino Acids

84.54

Weight (kDa)

8.61

Isoelectric Point (pI)

88.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	40 - 74	3.1e-06	Leucine rich repeat N-terminal domain
LRR_8	PF13855	107 - 164	1.6e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62440
fragaria_vesca	FvH4_4g00070
malus_domestica	MD04G1000500.v1.1
prunus_persica	Prupe.1G000500_v2.0.a1
rosa_laevigata	RLG00000010279
rosa_multiflora	Rmu_sc0006822.1_g000025
rosa_roxburghii	Rroxscaffold_5G00332680
rosa_rugosa	Rorug03G0296900
rosa_samantha	Rh4BG000400 Rh4CG000300 Rh4DG000400
rosa_wichuraiana	Rw4G000850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1198
AatII	GACGTC	1 cut(s)	840
Acc36I	ACCTGC	2 cut(s)	297, 1477
AccB7I	CCANNNNNTGG	1 cut(s)	400
AccII	CGCG	2 cut(s)	1095, 1117
AclWI	GGATC	4 cut(s)	411, 483, 537, 1011
AcoI	YGGCCR	6 cut(s)	105, 618, 733, 1090, 1818, 1911
AcsI	RAATTY	2 cut(s)	86, 1152
AcuI	CTGAAG	1 cut(s)	404
AcyI	GRCGYC	2 cut(s)	357, 837
AdeI	CACNNNGTG	1 cut(s)	2276
AfaI	GTAC	6 cut(s)	470, 1399, 1461, 1467, 1482, 1745
AflIII	ACRYGT	2 cut(s)	192, 663
AgeI	ACCGGT	2 cut(s)	857, 1486
AgsI	TTSAA	8 cut(s)	163, 697, 772, 782, 919, 1134, 1197, 1438
AhlI	ACTAGT	1 cut(s)	1456
AjiI	CACGTC	2 cut(s)	193, 1043
AjnI	CCWGG	4 cut(s)	131, 646, 991, 1343
AjuI	GAANNNNNNNTTGG	2 cut(s)	1552, 1584
Alw21I	GWGCWC	2 cut(s)	200, 450
Alw26I	GTCTC	3 cut(s)	9, 967, 2332
AlwI	GGATC	4 cut(s)	411, 483, 537, 1011
AlwNI	CAGNNNCTG	1 cut(s)	1469
Ama87I	CYCGRG	4 cut(s)	1125, 1862, 1958, 2051
AoxI	GGCC	8 cut(s)	105, 304, 618, 733, 784, 1090, 1818, 1911
ApoI	RAATTY	2 cut(s)	86, 1152
AsiGI	ACCGGT	2 cut(s)	857, 1486
AspLEI	GCGC	2 cut(s)	1119, 1172
AspS9I	GGNCC	2 cut(s)	154, 785
AsuC2I	CCSGG	3 cut(s)	1785, 1817, 1910
AsuII	TTCGAA	1 cut(s)	495
AvaI	CYCGRG	4 cut(s)	1125, 1862, 1958, 2051
AvaII	GGWCC	1 cut(s)	154
BalI	TGGCCA	2 cut(s)	107, 620
BanII	GRGCYC	1 cut(s)	2283
BbsI	GAAGAC	3 cut(s)	2, 205, 677
Bbv12I	GWGCWC	2 cut(s)	200, 450
BceAI	ACGGC	1 cut(s)	1183
BciT130I	CCWGG	4 cut(s)	133, 648, 993, 1345
BclI	TGATCA	1 cut(s)	1510
BcnI	CCSGG	3 cut(s)	1785, 1817, 1910
BcoDI	GTCTC	3 cut(s)	9, 967, 2332
BcuI	ACTAGT	1 cut(s)	1456
BfaI	CTAG	6 cut(s)	302, 1017, 1215, 1406, 1457, 1989
BfmI	CTRYAG	1 cut(s)	1054
BfoI	RGCGCY	1 cut(s)	1173
BfuAI	ACCTGC	2 cut(s)	297, 1477
BmcAI	AGTACT	2 cut(s)	470, 1745
Bme1390I	CCNGG	7 cut(s)	133, 648, 993, 1345, 1785, 1817, 1910
Bme18I	GGWCC	1 cut(s)	154
BmeT110I	CYCGRG	4 cut(s)	1125, 1862, 1958, 2051
BmgBI	CACGTC	2 cut(s)	193, 1043
BmgT120I	GGNCC	2 cut(s)	154, 785
BmiI	GGNNCC	4 cut(s)	156, 502, 563, 939
BmrFI	CCNGG	7 cut(s)	133, 648, 993, 1345, 1785, 1817, 1910
BmrI	ACTGGG	1 cut(s)	1416
BmsI	GCATC	8 cut(s)	526, 582, 663, 1972, 2172, 2236, 2263, 2345
BmuI	ACTGGG	1 cut(s)	1416
BpiI	GAAGAC	3 cut(s)	2, 205, 677
BpmI	CTGGAG	1 cut(s)	279
Bpu14I	TTCGAA	1 cut(s)	495
BpuEI	CTTGAG	1 cut(s)	449
BpuMI	CCSGG	3 cut(s)	1785, 1817, 1910
BsaHI	GRCGYC	2 cut(s)	357, 837
BsaWI	WCCGGW	3 cut(s)	857, 929, 1486
Bse118I	RCCGGY	6 cut(s)	251, 281, 598, 710, 857, 1486
Bse1I	ACTGG	4 cut(s)	182, 1422, 1463, 2315
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	4 cut(s)	133, 648, 993, 1345
BseGI	GGATG	5 cut(s)	573, 1222, 1538, 2140, 2230
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	421, 593
BseNI	ACTGG	4 cut(s)	182, 1422, 1463, 2315
BseX3I	CGGCCG	2 cut(s)	733, 1090
BseYI	CCCAGC	2 cut(s)	513, 1033
BsgI	GTGCAG	3 cut(s)	202, 1023, 1455
Bsh1236I	CGCG	2 cut(s)	1095, 1117
Bsh1285I	CGRYCG	3 cut(s)	736, 1093, 2124
BshFI	GGCC	8 cut(s)	107, 306, 620, 735, 786, 1092, 1820, 1913
BshTI	ACCGGT	2 cut(s)	857, 1486
BsiEI	CGRYCG	3 cut(s)	736, 1093, 2124
BsiHKAI	GWGCWC	2 cut(s)	200, 450
BsiHKCI	CYCGRG	4 cut(s)	1125, 1862, 1958, 2051
BslFI	GGGAC	5 cut(s)	347, 1029, 1432, 1652, 1742
BsmAI	GTCTC	3 cut(s)	9, 967, 2332
BsmFI	GGGAC	5 cut(s)	347, 1029, 1432, 1652, 1742
BsmI	GAATGC	2 cut(s)	642, 987
BsnI	GGCC	8 cut(s)	107, 306, 620, 735, 786, 1092, 1820, 1913
BsoBI	CYCGRG	4 cut(s)	1125, 1862, 1958, 2051
Bsp119I	TTCGAA	1 cut(s)	495
Bsp1286I	GDGCHC	3 cut(s)	200, 450, 2283
Bsp143I	GATC	8 cut(s)	403, 475, 529, 684, 729, 1003, 1217, 1510
BspANI	GGCC	8 cut(s)	107, 306, 620, 735, 786, 1092, 1820, 1913
BspCNI	CTCAG	2 cut(s)	420, 592
BspFNI	CGCG	2 cut(s)	1095, 1117
BspLI	GGNNCC	4 cut(s)	156, 502, 563, 939
BspMAI	CTGCAG	1 cut(s)	1058
BspMI	ACCTGC	2 cut(s)	297, 1477
BspPI	GGATC	4 cut(s)	411, 483, 537, 1011
BspQI	GCTCTTC	2 cut(s)	524, 812
BspT104I	TTCGAA	1 cut(s)	495
BsrDI	GCAATG	1 cut(s)	276
BsrFI	RCCGGY	6 cut(s)	251, 281, 598, 710, 857, 1486
BsrI	ACTGG	4 cut(s)	182, 1422, 1463, 2315
BssAI	RCCGGY	6 cut(s)	251, 281, 598, 710, 857, 1486
BssMI	GATC	8 cut(s)	403, 475, 529, 684, 729, 1003, 1217, 1510
BssNI	GRCGYC	2 cut(s)	357, 837
BssT1I	CCWWGG	5 cut(s)	98, 108, 1850, 1914, 2039
Bst2UI	CCWGG	4 cut(s)	133, 648, 993, 1345
Bst4CI	ACNGT	4 cut(s)	754, 1608, 1706, 1743
Bst6I	CTCTTC	4 cut(s)	332, 524, 812, 1753
BstACI	GRCGYC	2 cut(s)	357, 837
BstAPI	GCANNNNNTGC	1 cut(s)	984
BstBI	TTCGAA	1 cut(s)	495
BstC8I	GCNNGC	8 cut(s)	105, 253, 283, 719, 874, 891, 946, 1061
BstDEI	CTNAG	2 cut(s)	407, 579
BstDSI	CCRYGG	2 cut(s)	1047, 1093
BstF5I	GGATG	5 cut(s)	573, 1222, 1538, 2140, 2230
BstFNI	CGCG	2 cut(s)	1095, 1117
BstH2I	RGCGCY	1 cut(s)	1173
BstHHI	GCGC	2 cut(s)	1119, 1172
BstKTI	GATC	8 cut(s)	406, 478, 532, 687, 732, 1006, 1220, 1513
BstMAI	GTCTC	3 cut(s)	9, 967, 2332
BstMBI	GATC	8 cut(s)	403, 475, 529, 684, 729, 1003, 1217, 1510
BstMCI	CGRYCG	3 cut(s)	736, 1093, 2124
BstNI	CCWGG	4 cut(s)	133, 648, 993, 1345
BstNSI	RCATGY	2 cut(s)	667, 1667
BstSCI	CCNGG	7 cut(s)	131, 646, 991, 1343, 1783, 1815, 1908
BstSFI	CTRYAG	1 cut(s)	1054
BstUI	CGCG	2 cut(s)	1095, 1117
BstV2I	GAAGAC	3 cut(s)	2, 205, 677
BstX2I	RGATCY	3 cut(s)	403, 475, 529
BstXI	CCANNNNNNTGG	3 cut(s)	1851, 1947, 2040
BstYI	RGATCY	3 cut(s)	403, 475, 529
BstZI	CGGCCG	2 cut(s)	733, 1090
BsuRI	GGCC	8 cut(s)	107, 306, 620, 735, 786, 1092, 1820, 1913
BtgI	CCRYGG	2 cut(s)	1047, 1093
BtgZI	GCGATG	3 cut(s)	1128, 1188, 2235
BtrI	CACGTC	2 cut(s)	193, 1043
BtsCI	GGATG	5 cut(s)	573, 1222, 1538, 2140, 2230
BtsI	GCAGTG	1 cut(s)	948
BtsIMutI	CAGTG	2 cut(s)	948, 2322
BveI	ACCTGC	2 cut(s)	297, 1477
Cac8I	GCNNGC	8 cut(s)	105, 253, 283, 719, 874, 891, 946, 1061
CaiI	CAGNNNCTG	1 cut(s)	1469
CciNI	GCGGCCGC	1 cut(s)	1090
CfoI	GCGC	2 cut(s)	1119, 1172
Cfr10I	RCCGGY	6 cut(s)	251, 281, 598, 710, 857, 1486
Cfr13I	GGNCC	2 cut(s)	154, 785
Cfr42I	CCGCGG	1 cut(s)	1096
CseI	GACGC	2 cut(s)	346, 682
Csp6I	GTAC	6 cut(s)	469, 1398, 1460, 1466, 1481, 1744
CspAI	ACCGGT	2 cut(s)	857, 1486
CviAII	CATG	8 cut(s)	205, 395, 664, 1358, 1496, 1664, 1754, 2273
CviQI	GTAC	6 cut(s)	469, 1398, 1460, 1466, 1481, 1744
DdeI	CTNAG	2 cut(s)	407, 579
DpnI	GATC	8 cut(s)	405, 477, 531, 686, 731, 1005, 1219, 1512
DpnII	GATC	8 cut(s)	403, 475, 529, 684, 729, 1003, 1217, 1510
DraIII	CACNNNGTG	1 cut(s)	2276
DrdI	GACNNNNNNGTC	1 cut(s)	1198
DseDI	GACNNNNNNGTC	1 cut(s)	1198
EaeI	YGGCCR	6 cut(s)	105, 618, 733, 1090, 1818, 1911
EagI	CGGCCG	2 cut(s)	733, 1090
Eam1104I	CTCTTC	4 cut(s)	332, 524, 812, 1753
EarI	CTCTTC	4 cut(s)	332, 524, 812, 1753
EciI	GGCGGA	6 cut(s)	787, 1725, 1800, 1893, 1983, 1989
EclXI	CGGCCG	2 cut(s)	733, 1090
Eco130I	CCWWGG	5 cut(s)	98, 108, 1850, 1914, 2039
Eco147I	AGGCCT	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	2283
Eco47I	GGWCC	1 cut(s)	154
Eco52I	CGGCCG	2 cut(s)	733, 1090
Eco57I	CTGAAG	1 cut(s)	404
Eco88I	CYCGRG	4 cut(s)	1125, 1862, 1958, 2051
EcoO109I	RGGNCCY	1 cut(s)	785
EcoRI	GAATTC	1 cut(s)	1152
EcoRII	CCWGG	4 cut(s)	131, 646, 991, 1343
EcoT14I	CCWWGG	5 cut(s)	98, 108, 1850, 1914, 2039
EcoT22I	ATGCAT	1 cut(s)	2338
EcoT38I	GRGCYC	1 cut(s)	2283
ErhI	CCWWGG	5 cut(s)	98, 108, 1850, 1914, 2039
FaeI	CATG	8 cut(s)	208, 398, 667, 1361, 1499, 1667, 1757, 2276
FaqI	GGGAC	5 cut(s)	347, 1029, 1432, 1652, 1742
FatI	CATG	8 cut(s)	204, 394, 663, 1357, 1495, 1663, 1753, 2272
FauI	CCCGC	3 cut(s)	1091, 1266, 1512
FauNDI	CATATG	1 cut(s)	2332
FbaI	TGATCA	1 cut(s)	1510
FokI	GGATG	5 cut(s)	560, 1209, 1525, 2127, 2217
FriOI	GRGCYC	1 cut(s)	2283
FspBI	CTAG	6 cut(s)	302, 1017, 1215, 1406, 1457, 1989
GlaI	GCGC	2 cut(s)	1118, 1171
GsaI	CCCAGC	2 cut(s)	517, 1037
GsuI	CTGGAG	1 cut(s)	279
HaeII	RGCGCY	1 cut(s)	1173
HaeIII	GGCC	8 cut(s)	107, 306, 620, 735, 786, 1092, 1820, 1913
HgaI	GACGC	2 cut(s)	346, 682
HhaI	GCGC	2 cut(s)	1119, 1172
Hin1I	GRCGYC	2 cut(s)	357, 837
Hin1II	CATG	8 cut(s)	208, 398, 667, 1361, 1499, 1667, 1757, 2276
Hin6I	GCGC	2 cut(s)	1117, 1170
HinP1I	GCGC	2 cut(s)	1117, 1170
HindIII	AAGCTT	1 cut(s)	370
HinfI	GANTC	7 cut(s)	77, 210, 583, 852, 1348, 1618, 2325
Hpy166II	GTNNAC	5 cut(s)	1051, 1492, 1709, 1898, 2087
Hpy188I	TCNGA	7 cut(s)	154, 190, 316, 582, 590, 1191, 2007
Hpy188III	TCNNGA	4 cut(s)	296, 533, 1862, 1958
Hpy8I	GTNNAC	5 cut(s)	1051, 1492, 1709, 1898, 2087
Hpy99I	CGWCG	2 cut(s)	362, 842
HpyCH4III	ACNGT	4 cut(s)	754, 1608, 1706, 1743
HpyCH4IV	ACGT	4 cut(s)	192, 837, 1042, 1386
HpyF3I	CTNAG	2 cut(s)	407, 579
HpySE526I	ACGT	4 cut(s)	192, 837, 1042, 1386
Hsp92I	GRCGYC	2 cut(s)	357, 837
Hsp92II	CATG	8 cut(s)	208, 398, 667, 1361, 1499, 1667, 1757, 2276
HspAI	GCGC	2 cut(s)	1117, 1170
KroI	GCCGGC	2 cut(s)	251, 281
KroNI	GCCGGC	2 cut(s)	253, 283
Ksp22I	TGATCA	1 cut(s)	1510
KspI	CCGCGG	1 cut(s)	1096
Kzo9I	GATC	8 cut(s)	403, 475, 529, 684, 729, 1003, 1217, 1510
LguI	GCTCTTC	2 cut(s)	524, 812
LweI	GCATC	8 cut(s)	526, 582, 663, 1972, 2172, 2236, 2263, 2345
MaeI	CTAG	6 cut(s)	302, 1017, 1215, 1406, 1457, 1989
MaeII	ACGT	4 cut(s)	192, 837, 1042, 1386
MaeIII	GTNAC	4 cut(s)	1105, 1545, 1725, 1787
MalI	GATC	8 cut(s)	405, 477, 531, 686, 731, 1005, 1219, 1512
MboI	GATC	8 cut(s)	403, 475, 529, 684, 729, 1003, 1217, 1510
MboII	GAAGA	9 cut(s)	139, 205, 319, 511, 682, 829, 1257, 1346, 1740
MfeI	CAATTG	1 cut(s)	884
MflI	RGATCY	3 cut(s)	403, 475, 529
MhlI	GDGCHC	3 cut(s)	200, 450, 2283
MlsI	TGGCCA	2 cut(s)	107, 620
MluCI	AATT	6 cut(s)	86, 884, 1152, 2113, 2178, 2355
MluNI	TGGCCA	2 cut(s)	107, 620
MlyI	GAGTC	4 cut(s)	71, 219, 1342, 2334
MmeI	TCCRAC	7 cut(s)	168, 339, 366, 981, 1214, 1646, 2030
Mox20I	TGGCCA	2 cut(s)	107, 620
Mph1103I	ATGCAT	1 cut(s)	2338
MroNI	GCCGGC	2 cut(s)	251, 281
MscI	TGGCCA	2 cut(s)	107, 620
MseI	TTAA	1 cut(s)	486
MslI	CAYNNNNRTG	2 cut(s)	1356, 1572
Msp20I	TGGCCA	2 cut(s)	107, 620
MspA1I	CMGCKG	6 cut(s)	1037, 1095, 1478, 1889, 1985, 2078
MspR9I	CCNGG	7 cut(s)	133, 648, 993, 1345, 1785, 1817, 1910
MunI	CAATTG	1 cut(s)	884
Mva1269I	GAATGC	2 cut(s)	642, 987
MvaI	CCWGG	4 cut(s)	133, 648, 993, 1345
MvnI	CGCG	2 cut(s)	1095, 1117
NaeI	GCCGGC	2 cut(s)	253, 283
NciI	CCSGG	3 cut(s)	1785, 1817, 1910
NdeI	CATATG	1 cut(s)	2332
NdeII	GATC	8 cut(s)	403, 475, 529, 684, 729, 1003, 1217, 1510
NgoMIV	GCCGGC	2 cut(s)	251, 281
NlaIII	CATG	8 cut(s)	208, 398, 667, 1361, 1499, 1667, 1757, 2276
NlaIV	GGNNCC	4 cut(s)	156, 502, 563, 939
NmuCI	GTSAC	3 cut(s)	1105, 1545, 1725
NotI	GCGGCCGC	1 cut(s)	1090
NsiI	ATGCAT	1 cut(s)	2338
NspI	RCATGY	2 cut(s)	667, 1667
NspV	TTCGAA	1 cut(s)	495
PceI	AGGCCT	1 cut(s)	306
PciI	ACATGT	1 cut(s)	663
PciSI	GCTCTTC	2 cut(s)	524, 812
PcsI	WCGNNNNNNNCGW	2 cut(s)	189, 501
PctI	GAATGC	2 cut(s)	642, 987
PdiI	GCCGGC	2 cut(s)	253, 283
PfeI	GAWTC	3 cut(s)	583, 852, 1618
PflMI	CCANNNNNTGG	1 cut(s)	400
PinAI	ACCGGT	2 cut(s)	857, 1486
PleI	GAGTC	4 cut(s)	71, 218, 1342, 2333
PpsI	GAGTC	4 cut(s)	71, 218, 1342, 2333
PscI	ACATGT	1 cut(s)	663
Psp6I	CCWGG	4 cut(s)	131, 646, 991, 1343
PspFI	CCCAGC	2 cut(s)	513, 1033
PspGI	CCWGG	4 cut(s)	131, 646, 991, 1343
PspN4I	GGNNCC	4 cut(s)	156, 502, 563, 939
PspPI	GGNCC	2 cut(s)	154, 785
PstI	CTGCAG	1 cut(s)	1058
PstNI	CAGNNNCTG	1 cut(s)	1469
PsuI	RGATCY	3 cut(s)	403, 475, 529
PvuII	CAGCTG	5 cut(s)	1037, 1478, 1889, 1985, 2078
RsaI	GTAC	6 cut(s)	470, 1399, 1461, 1467, 1482, 1745
RsaNI	GTAC	6 cut(s)	469, 1398, 1460, 1466, 1481, 1744
RseI	CAYNNNNRTG	2 cut(s)	1356, 1572
SacII	CCGCGG	1 cut(s)	1096
SapI	GCTCTTC	2 cut(s)	524, 812
SaqAI	TTAA	1 cut(s)	486
Sau3AI	GATC	8 cut(s)	403, 475, 529, 684, 729, 1003, 1217, 1510
Sau96I	GGNCC	2 cut(s)	154, 785
ScaI	AGTACT	2 cut(s)	470, 1745
SchI	GAGTC	4 cut(s)	71, 219, 1342, 2334
ScrFI	CCNGG	7 cut(s)	133, 648, 993, 1345, 1785, 1817, 1910
SduI	GDGCHC	3 cut(s)	200, 450, 2283
SfaNI	GCATC	8 cut(s)	526, 582, 663, 1972, 2172, 2236, 2263, 2345
SfcI	CTRYAG	1 cut(s)	1054
Sfr303I	CCGCGG	1 cut(s)	1096
SfuI	TTCGAA	1 cut(s)	495
SgrAI	CRCCGGYG	1 cut(s)	857
SgrBI	CCGCGG	1 cut(s)	1096
SinI	GGWCC	1 cut(s)	154
SmiMI	CAYNNNNRTG	2 cut(s)	1356, 1572
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
SpeI	ACTAGT	1 cut(s)	1456
Sse9I	AATT	6 cut(s)	86, 884, 1152, 2113, 2178, 2355
SseBI	AGGCCT	1 cut(s)	306
SspMI	CTAG	6 cut(s)	302, 1017, 1215, 1406, 1457, 1989
StuI	AGGCCT	1 cut(s)	306
StyD4I	CCNGG	7 cut(s)	131, 646, 991, 1343, 1783, 1815, 1908
StyI	CCWWGG	5 cut(s)	98, 108, 1850, 1914, 2039
TaaI	ACNGT	4 cut(s)	754, 1608, 1706, 1743
TaiI	ACGT	4 cut(s)	195, 840, 1045, 1389
TaqI	TCGA	5 cut(s)	173, 495, 522, 534, 1427
TaqII	GACCGA	1 cut(s)	2138
TasI	AATT	6 cut(s)	86, 884, 1152, 2113, 2178, 2355
TatI	WGTACW	2 cut(s)	468, 1743
TfiI	GAWTC	3 cut(s)	583, 852, 1618
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	2 cut(s)	955, 2322
TseFI	GTSAC	3 cut(s)	1105, 1545, 1725
Tsp45I	GTSAC	3 cut(s)	1105, 1545, 1725
TspDTI	ATGAA	4 cut(s)	830, 1299, 1346, 1839
TspGWI	ACGGA	2 cut(s)	470, 493
TspRI	CASTG	2 cut(s)	955, 2322
Van91I	CCANNNNNTGG	1 cut(s)	400
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	2 cut(s)	86, 1152
XceI	RCATGY	2 cut(s)	667, 1667
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1944
XspI	CTAG	6 cut(s)	302, 1017, 1215, 1406, 1457, 1989
ZraI	GACGTC	1 cut(s)	838
ZrmI	AGTACT	2 cut(s)	470, 1745
Zsp2I	ATGCAT	1 cut(s)	2338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.