Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0017485

Physical Location & Seq

Genomic Coordinates Reverse (-)

146846 .. 151571

Gene Structure 4726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG000400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2100 bp

ATGTCTCGTCTTCTTCGTCGTCTGTCTTTCTTGCTCCTCCTCCTCATCCTCCTCCACATCTGCTACGCTGCTGCTGCTGATGACTCACTCAAATTTGAGAACCCAAGGCTTGCCAAGGCTTACACCGCCCTCCAAGCCTGGAAGTCTGCCATCTTCTCGGACCCATTCAACTTCACCTCGAACTGGAACGGGTCGGACGTGTGCTCCTACATGGGAGTCTTCTGCACCGCCCTCCCCTCAATCGGGCGTGTTGTCGCCGGCATTGACCTCAACCACGCTGACATTGCCGGCTACCTGCCTCCAGAGCTAGGCCTCCTCTCCGACCTCGCTCTCTTCCACATCAACTCCAACCGCTTCTGCGGCGTCGTCCCCACAAGCTTTCGGCGACTGAAGCTGCTCCATGAGCTGGATCTCAGCAACAACCGCTTTGTGGGGAACTTCCCCATAGTGGTGCTCTCCTTGCCTTCCCTCAAGTACTTGGATCTCCGTTTTAACGAGTTCGAAGGCTCCGTTCCTTCCCAGCTCTTCGACAAAGATCTCGATGCCATTTTCCTCAACGACAACAGGTTCCGCTTCGGCATCCCTCAGAATCTCGGAAACTCGCCGGTTTCGGTGCTGGTGTTGGCCAACAATAATCTTGGGGGTTGCATTCCAGGTAGCATCGGCAACATGTGGAAGACGCTCAACGAGATCATTCTGTTGAATGACAATCTCACCGGCTGCTTGCCTTTCCAGATCGGCCGCCTACGCAATCTCACCGTCTTTGATGTGAGCTTCAACCAGCTTCAAGGCCCTCTGCCCTCCGCCTCCATAGCCAAAATGAAGAGCTTGGAGGAGCTGGACGTCGCCCATAACAGATTCACCGGTGTAATACCAGCCAGCATTTGCCAATTGCCAGCCTTGCACAACTTCACCTATTCCTTCAACTACTTCACCGGAGAGGCTCCTGCTTGCACTGCAACTCCTGTCTCTCATAATGGTAGCAAGAACTGCATTCCTGGCAAGTTGGATCAAAGATCTACAAGGGAATGTGCTTCCCCAGCTGCACGTCCCGTGGACTGCAGCAAGCTCAAATGCGGAGGTGGCGGTGGCGGTGGCCGCGGCGGGTCTGTCACAAAGCCGCGCCCTCCTCGGGCTTCAACACCTCCTTCGCAAAGAATTCCTGTTCCTAAAGTTGCTCCTCCTCCACCCCCTCCGACTTCAAAGTCATCGCCTTCCACTAGATCACATCCTCCACCGCCAATATCAACATCAACATCACCCCCGCCTTCTTCACCTTCACCTTCACCTTCACCGACCAAGTCAAAGCCGCCTTCACCTCCTCCACCACCTACTGAAAAAGTATCACCCAGGACTCATCTTCATGTTCCTCCACCCCCACCTACCCAAAAGGTATCACCAAGTACCCATCTAGCTCCACCTCCCCCCAGTTCGACCCATTTCAACTATTCGTCCCCACCACTAGTACCAGTACCTGCACCAGCTGTACCACCGGTTTACCATGCCTCCCCGCCTGATCATCACTCTCATATAGTGCCTCCATCATCCCCGTCACCATCACCACCAAGTTATCATTCTTATGCTTCACCGCCGCCGCCTCCACAACAGTCTGTTGAGATTCCAACTCCTGCCCCATCATCTCCACCACCTTATTGGCACACTCCCGAGCATCATTCGCCACCCAAAACAGCTGCTAGTCCACCTCCGCCCCCGGCCAATGAGCATTATACAAATGCACCACCACCTTGGCACACACCCGAGCATTATTCACCACCCAAAACAGCTGCAAGTCCACCTCCCCCTCCCCCATCAGCTCCTATTTCACCGACCGAGCCATCACCTTCCCATCCTCTGCCGCCGCCCATAGGCTGTATCATTCCAGCACCAATTCTGCCACCTCCACCAAGCCATCACCACTCACCTCCTCAACAATGGCATCATCCACCACCACCATCATCGTCGCATCAACAACCTCCTCCACATGCTCCAACTTGGTCCTATTTTTGCTACCAACAAACTTGCCCAACTTCCTCTTCTTGGGTGGAGAAACCTCCAATCTATCGGATTTTGAATTCAAAGCCAGAGAGGGCTCAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0005198 GO:0005199 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0007275 GO:0008150 GO:0009505 GO:0009506 GO:0009653 GO:0009826 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016043 GO:0016049 GO:0022622 GO:0030054 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044464 GO:0048364 GO:0048468 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0055044 GO:0060560 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8

Protein Analysis

699

Amino Acids

75.19

Weight (kDa)

9.05

Isoelectric Point (pI)

80.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	42 - 76	2.7e-06	Leucine rich repeat N-terminal domain
LRR_8	PF13855	109 - 166	5.3e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62440
fragaria_vesca	FvH4_4g00070
malus_domestica	MD04G1000500.v1.1
prunus_persica	Prupe.1G000500_v2.0.a1
rosa_laevigata	RLG00000010279
rosa_multiflora	Rmu_sc0006822.1_g000025
rosa_roxburghii	Rroxscaffold_5G00332680
rosa_rugosa	Rorug03G0296900
rosa_samantha	Rh4BG000400 Rh4CG000300 Rh4DG000400
rosa_wichuraiana	Rw4G000850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1204
AatII	GACGTC	1 cut(s)	846
Acc36I	ACCTGC	2 cut(s)	303, 1483
AccB7I	CCANNNNNTGG	1 cut(s)	406
AccII	CGCG	2 cut(s)	1101, 1123
AclWI	GGATC	3 cut(s)	417, 489, 1017
AcoI	YGGCCR	4 cut(s)	624, 739, 1096, 1713
AcsI	RAATTY	3 cut(s)	92, 1158, 2071
AcuI	CTGAAG	1 cut(s)	410
AcyI	GRCGYC	2 cut(s)	363, 843
AfaI	GTAC	5 cut(s)	476, 1405, 1467, 1473, 1488
AflIII	ACRYGT	2 cut(s)	198, 669
AgeI	ACCGGT	2 cut(s)	863, 1492
AhlI	ACTAGT	1 cut(s)	1462
AjiI	CACGTC	2 cut(s)	199, 1049
AjnI	CCWGG	4 cut(s)	137, 652, 997, 1349
AjuI	GAANNNNNNNTTGG	4 cut(s)	1558, 1590, 2017, 2049
Alw21I	GWGCWC	2 cut(s)	206, 456
Alw26I	GTCTC	2 cut(s)	9, 973
AlwI	GGATC	3 cut(s)	417, 489, 1017
AlwNI	CAGNNNCTG	1 cut(s)	1475
Ama87I	CYCGRG	3 cut(s)	1131, 1664, 1757
AoxI	GGCC	6 cut(s)	310, 624, 739, 790, 1096, 1713
ApeKI	GCWGC	9 cut(s)	68, 71, 74, 394, 720, 1043, 1062, 1691, 1784
ApoI	RAATTY	3 cut(s)	92, 1158, 2071
AsiGI	ACCGGT	2 cut(s)	863, 1492
AspLEI	GCGC	1 cut(s)	1125
AspS9I	GGNCC	3 cut(s)	160, 791, 1995
AsuC2I	CCSGG	1 cut(s)	1712
AsuII	TTCGAA	1 cut(s)	501
AvaI	CYCGRG	3 cut(s)	1131, 1664, 1757
AvaII	GGWCC	2 cut(s)	160, 1995
BalI	TGGCCA	1 cut(s)	626
BanII	GRGCYC	1 cut(s)	2092
BbsI	GAAGAC	3 cut(s)	2, 211, 683
Bbv12I	GWGCWC	2 cut(s)	206, 456
BbvI	GCAGC	9 cut(s)	55, 58, 61, 381, 707, 1030, 1074, 1678, 1771
BciT130I	CCWGG	4 cut(s)	139, 654, 999, 1351
BclI	TGATCA	1 cut(s)	1516
BcnI	CCSGG	1 cut(s)	1712
BcoDI	GTCTC	2 cut(s)	9, 973
BcuI	ACTAGT	1 cut(s)	1462
BfaI	CTAG	6 cut(s)	308, 1221, 1412, 1463, 1695, 2098
BfmI	CTRYAG	1 cut(s)	1060
BfuAI	ACCTGC	2 cut(s)	303, 1483
BglII	AGATCT	2 cut(s)	535, 1016
BmcAI	AGTACT	1 cut(s)	476
Bme1390I	CCNGG	5 cut(s)	139, 654, 999, 1351, 1712
Bme18I	GGWCC	2 cut(s)	160, 1995
BmeT110I	CYCGRG	3 cut(s)	1131, 1664, 1757
BmgBI	CACGTC	2 cut(s)	199, 1049
BmgT120I	GGNCC	3 cut(s)	160, 791, 1995
BmiI	GGNNCC	4 cut(s)	162, 508, 569, 945
BmrFI	CCNGG	5 cut(s)	139, 654, 999, 1351, 1712
BmrI	ACTGGG	1 cut(s)	1422
BmsI	GCATC	6 cut(s)	532, 588, 669, 1678, 1945, 1972
BmuI	ACTGGG	1 cut(s)	1422
BpiI	GAAGAC	3 cut(s)	2, 211, 683
BpmI	CTGGAG	1 cut(s)	285
Bpu14I	TTCGAA	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	455
BpuMI	CCSGG	1 cut(s)	1712
BsaHI	GRCGYC	2 cut(s)	363, 843
BsaJI	CCNNGG	8 cut(s)	104, 114, 1053, 1099, 1130, 1349, 1710, 1745
BsaWI	WCCGGW	3 cut(s)	863, 935, 1492
BsaXI	ACNNNNNCTCC	8 cut(s)	188, 218, 329, 359, 946, 976, 1490, 1520
Bse118I	RCCGGY	6 cut(s)	257, 287, 604, 716, 863, 1492
Bse1I	ACTGG	3 cut(s)	188, 1428, 1469
Bse3DI	GCAATG	1 cut(s)	282
BseBI	CCWGG	4 cut(s)	139, 654, 999, 1351
BseDI	CCNNGG	8 cut(s)	104, 114, 1053, 1099, 1130, 1349, 1710, 1745
BseGI	GGATG	6 cut(s)	45, 579, 1228, 1544, 1846, 1939
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	2 cut(s)	427, 599
BseNI	ACTGG	3 cut(s)	188, 1428, 1469
BseX3I	CGGCCG	1 cut(s)	739
BseXI	GCAGC	9 cut(s)	55, 58, 61, 381, 707, 1030, 1074, 1678, 1771
BseYI	CCCAGC	2 cut(s)	519, 1039
BsgI	GTGCAG	3 cut(s)	208, 1029, 1461
Bsh1236I	CGCG	2 cut(s)	1101, 1123
Bsh1285I	CGRYCG	2 cut(s)	742, 1830
BshFI	GGCC	6 cut(s)	312, 626, 741, 792, 1098, 1715
BshTI	ACCGGT	2 cut(s)	863, 1492
BsiEI	CGRYCG	2 cut(s)	742, 1830
BsiHKAI	GWGCWC	2 cut(s)	206, 456
BsiHKCI	CYCGRG	3 cut(s)	1131, 1664, 1757
BsiSI	CCGG	8 cut(s)	258, 288, 605, 717, 864, 936, 1493, 1712
BslFI	GGGAC	3 cut(s)	353, 1035, 1438
BsmAI	GTCTC	2 cut(s)	9, 973
BsmFI	GGGAC	3 cut(s)	353, 1035, 1438
BsmI	GAATGC	2 cut(s)	648, 993
BsnI	GGCC	6 cut(s)	312, 626, 741, 792, 1098, 1715
BsoBI	CYCGRG	3 cut(s)	1131, 1664, 1757
Bsp119I	TTCGAA	1 cut(s)	501
Bsp1286I	GDGCHC	3 cut(s)	206, 456, 2092
Bsp143I	GATC	9 cut(s)	409, 481, 535, 690, 735, 1009, 1016, 1223, 1516
BspANI	GGCC	6 cut(s)	312, 626, 741, 792, 1098, 1715
BspCNI	CTCAG	2 cut(s)	426, 598
BspFNI	CGCG	2 cut(s)	1101, 1123
BspLI	GGNNCC	4 cut(s)	162, 508, 569, 945
BspMAI	CTGCAG	1 cut(s)	1064
BspMI	ACCTGC	2 cut(s)	303, 1483
BspPI	GGATC	3 cut(s)	417, 489, 1017
BspQI	GCTCTTC	2 cut(s)	530, 818
BspT104I	TTCGAA	1 cut(s)	501
BsrDI	GCAATG	1 cut(s)	282
BsrFI	RCCGGY	6 cut(s)	257, 287, 604, 716, 863, 1492
BsrI	ACTGG	3 cut(s)	188, 1428, 1469
BssAI	RCCGGY	6 cut(s)	257, 287, 604, 716, 863, 1492
BssECI	CCNNGG	8 cut(s)	104, 114, 1053, 1099, 1130, 1349, 1710, 1745
BssMI	GATC	9 cut(s)	409, 481, 535, 690, 735, 1009, 1016, 1223, 1516
BssNI	GRCGYC	2 cut(s)	363, 843
BssT1I	CCWWGG	3 cut(s)	104, 114, 1745
Bst2UI	CCWGG	4 cut(s)	139, 654, 999, 1351
Bst4CI	ACNGT	2 cut(s)	760, 1608
Bst6I	CTCTTC	4 cut(s)	338, 530, 818, 2038
BstACI	GRCGYC	2 cut(s)	363, 843
BstAPI	GCANNNNNTGC	1 cut(s)	990
BstBI	TTCGAA	1 cut(s)	501
BstC8I	GCNNGC	8 cut(s)	111, 259, 289, 725, 880, 897, 952, 1067
BstDEI	CTNAG	2 cut(s)	413, 585
BstDSI	CCRYGG	2 cut(s)	1053, 1099
BstF5I	GGATG	6 cut(s)	45, 579, 1228, 1544, 1846, 1939
BstFNI	CGCG	2 cut(s)	1101, 1123
BstHHI	GCGC	1 cut(s)	1125
BstKTI	GATC	9 cut(s)	412, 484, 538, 693, 738, 1012, 1019, 1226, 1519
BstMAI	GTCTC	2 cut(s)	9, 973
BstMBI	GATC	9 cut(s)	409, 481, 535, 690, 735, 1009, 1016, 1223, 1516
BstMCI	CGRYCG	2 cut(s)	742, 1830
BstNI	CCWGG	4 cut(s)	139, 654, 999, 1351
BstNSI	RCATGY	2 cut(s)	673, 1985
BstSCI	CCNGG	5 cut(s)	137, 652, 997, 1349, 1710
BstSFI	CTRYAG	1 cut(s)	1060
BstUI	CGCG	2 cut(s)	1101, 1123
BstV1I	GCAGC	9 cut(s)	55, 58, 61, 381, 707, 1030, 1074, 1678, 1771
BstV2I	GAAGAC	3 cut(s)	2, 211, 683
BstX2I	RGATCY	4 cut(s)	409, 481, 535, 1016
BstXI	CCANNNNNNTGG	2 cut(s)	1653, 1746
BstYI	RGATCY	4 cut(s)	409, 481, 535, 1016
BstZI	CGGCCG	1 cut(s)	739
BsuRI	GGCC	6 cut(s)	312, 626, 741, 792, 1098, 1715
BtgI	CCRYGG	2 cut(s)	1053, 1099
BtgZI	GCGATG	1 cut(s)	1194
BtrI	CACGTC	2 cut(s)	199, 1049
BtsCI	GGATG	6 cut(s)	45, 579, 1228, 1544, 1846, 1939
BtsI	GCAGTG	1 cut(s)	954
BtsIMutI	CAGTG	1 cut(s)	954
BveI	ACCTGC	2 cut(s)	303, 1483
Cac8I	GCNNGC	8 cut(s)	111, 259, 289, 725, 880, 897, 952, 1067
CaiI	CAGNNNCTG	1 cut(s)	1475
CfoI	GCGC	1 cut(s)	1125
Cfr10I	RCCGGY	6 cut(s)	257, 287, 604, 716, 863, 1492
Cfr13I	GGNCC	3 cut(s)	160, 791, 1995
Cfr42I	CCGCGG	1 cut(s)	1102
CseI	GACGC	2 cut(s)	352, 688
Csp6I	GTAC	5 cut(s)	475, 1404, 1466, 1472, 1487
CspAI	ACCGGT	2 cut(s)	863, 1492
CviAII	CATG	6 cut(s)	211, 401, 670, 1364, 1502, 1982
CviQI	GTAC	5 cut(s)	475, 1404, 1466, 1472, 1487
DdeI	CTNAG	2 cut(s)	413, 585
DpnI	GATC	9 cut(s)	411, 483, 537, 692, 737, 1011, 1018, 1225, 1518
DpnII	GATC	9 cut(s)	409, 481, 535, 690, 735, 1009, 1016, 1223, 1516
DrdI	GACNNNNNNGTC	1 cut(s)	1204
DseDI	GACNNNNNNGTC	1 cut(s)	1204
EaeI	YGGCCR	4 cut(s)	624, 739, 1096, 1713
EagI	CGGCCG	1 cut(s)	739
Eam1104I	CTCTTC	4 cut(s)	338, 530, 818, 2038
EarI	CTCTTC	4 cut(s)	338, 530, 818, 2038
EciI	GGCGGA	2 cut(s)	793, 1695
EclXI	CGGCCG	1 cut(s)	739
Eco130I	CCWWGG	3 cut(s)	104, 114, 1745
Eco147I	AGGCCT	1 cut(s)	312
Eco24I	GRGCYC	1 cut(s)	2092
Eco47I	GGWCC	2 cut(s)	160, 1995
Eco52I	CGGCCG	1 cut(s)	739
Eco57I	CTGAAG	1 cut(s)	410
Eco88I	CYCGRG	3 cut(s)	1131, 1664, 1757
EcoO109I	RGGNCCY	1 cut(s)	791
EcoRI	GAATTC	2 cut(s)	1158, 2071
EcoRII	CCWGG	4 cut(s)	137, 652, 997, 1349
EcoT14I	CCWWGG	3 cut(s)	104, 114, 1745
EcoT38I	GRGCYC	1 cut(s)	2092
ErhI	CCWWGG	3 cut(s)	104, 114, 1745
FaeI	CATG	6 cut(s)	214, 404, 673, 1367, 1505, 1985
FaqI	GGGAC	3 cut(s)	353, 1035, 1438
FatI	CATG	6 cut(s)	210, 400, 669, 1363, 1501, 1981
FauI	CCCGC	3 cut(s)	1097, 1272, 1518
FbaI	TGATCA	1 cut(s)	1516
FokI	GGATG	6 cut(s)	32, 566, 1215, 1531, 1833, 1926
FriOI	GRGCYC	1 cut(s)	2092
FspBI	CTAG	6 cut(s)	308, 1221, 1412, 1463, 1695, 2098
GlaI	GCGC	1 cut(s)	1124
GsaI	CCCAGC	2 cut(s)	523, 1043
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	6 cut(s)	312, 626, 741, 792, 1098, 1715
HapII	CCGG	8 cut(s)	258, 288, 605, 717, 864, 936, 1493, 1712
HgaI	GACGC	2 cut(s)	352, 688
HhaI	GCGC	1 cut(s)	1125
Hin1I	GRCGYC	2 cut(s)	363, 843
Hin1II	CATG	6 cut(s)	214, 404, 673, 1367, 1505, 1985
Hin6I	GCGC	1 cut(s)	1123
HinP1I	GCGC	1 cut(s)	1123
HindIII	AAGCTT	1 cut(s)	376
HinfI	GANTC	6 cut(s)	83, 216, 589, 858, 1354, 1618
HpaII	CCGG	8 cut(s)	258, 288, 605, 717, 864, 936, 1493, 1712
Hpy166II	GTNNAC	4 cut(s)	1057, 1498, 1700, 1793
Hpy188I	TCNGA	7 cut(s)	160, 196, 322, 588, 596, 1197, 2064
Hpy188III	TCNNGA	4 cut(s)	302, 539, 733, 1664
Hpy8I	GTNNAC	4 cut(s)	1057, 1498, 1700, 1793
Hpy99I	CGWCG	4 cut(s)	21, 368, 848, 1963
HpyCH4III	ACNGT	2 cut(s)	760, 1608
HpyCH4IV	ACGT	3 cut(s)	198, 843, 1048
HpyF3I	CTNAG	2 cut(s)	413, 585
HpySE526I	ACGT	3 cut(s)	198, 843, 1048
Hsp92I	GRCGYC	2 cut(s)	363, 843
Hsp92II	CATG	6 cut(s)	214, 404, 673, 1367, 1505, 1985
HspAI	GCGC	1 cut(s)	1123
KroI	GCCGGC	2 cut(s)	257, 287
KroNI	GCCGGC	2 cut(s)	259, 289
Ksp22I	TGATCA	1 cut(s)	1516
KspI	CCGCGG	1 cut(s)	1102
Kzo9I	GATC	9 cut(s)	409, 481, 535, 690, 735, 1009, 1016, 1223, 1516
LguI	GCTCTTC	2 cut(s)	530, 818
Lsp1109I	GCAGC	9 cut(s)	55, 58, 61, 381, 707, 1030, 1074, 1678, 1771
LweI	GCATC	6 cut(s)	532, 588, 669, 1678, 1945, 1972
MaeI	CTAG	6 cut(s)	308, 1221, 1412, 1463, 1695, 2098
MaeII	ACGT	3 cut(s)	198, 843, 1048
MaeIII	GTNAC	2 cut(s)	1111, 1551
MalI	GATC	9 cut(s)	411, 483, 537, 692, 737, 1011, 1018, 1225, 1518
MboI	GATC	9 cut(s)	409, 481, 535, 690, 735, 1009, 1016, 1223, 1516
MfeI	CAATTG	1 cut(s)	890
MflI	RGATCY	4 cut(s)	409, 481, 535, 1016
MhlI	GDGCHC	3 cut(s)	206, 456, 2092
MlsI	TGGCCA	1 cut(s)	626
MluCI	AATT	5 cut(s)	92, 890, 1158, 1887, 2071
MluNI	TGGCCA	1 cut(s)	626
MlyI	GAGTC	3 cut(s)	77, 225, 1348
MmeI	TCCRAC	7 cut(s)	174, 345, 372, 987, 1220, 1646, 2012
Mox20I	TGGCCA	1 cut(s)	626
MroNI	GCCGGC	2 cut(s)	257, 287
MscI	TGGCCA	1 cut(s)	626
MseI	TTAA	1 cut(s)	492
MslI	CAYNNNNRTG	3 cut(s)	449, 1362, 1578
Msp20I	TGGCCA	1 cut(s)	626
MspA1I	CMGCKG	5 cut(s)	1043, 1101, 1484, 1691, 1784
MspI	CCGG	8 cut(s)	258, 288, 605, 717, 864, 936, 1493, 1712
MspR9I	CCNGG	5 cut(s)	139, 654, 999, 1351, 1712
MunI	CAATTG	1 cut(s)	890
Mva1269I	GAATGC	2 cut(s)	648, 993
MvaI	CCWGG	4 cut(s)	139, 654, 999, 1351
MvnI	CGCG	2 cut(s)	1101, 1123
NaeI	GCCGGC	2 cut(s)	259, 289
NciI	CCSGG	1 cut(s)	1712
NdeII	GATC	9 cut(s)	409, 481, 535, 690, 735, 1009, 1016, 1223, 1516
NgoMIV	GCCGGC	2 cut(s)	257, 287
NlaIII	CATG	6 cut(s)	214, 404, 673, 1367, 1505, 1985
NlaIV	GGNNCC	4 cut(s)	162, 508, 569, 945
NmuCI	GTSAC	2 cut(s)	1111, 1551
NspI	RCATGY	2 cut(s)	673, 1985
NspV	TTCGAA	1 cut(s)	501
PceI	AGGCCT	1 cut(s)	312
PciI	ACATGT	1 cut(s)	669
PciSI	GCTCTTC	2 cut(s)	530, 818
PcsI	WCGNNNNNNNCGW	3 cut(s)	13, 195, 507
PctI	GAATGC	2 cut(s)	648, 993
PdiI	GCCGGC	2 cut(s)	259, 289
PfeI	GAWTC	3 cut(s)	589, 858, 1618
PflFI	GACNNNGTC	1 cut(s)	1300
PflMI	CCANNNNNTGG	1 cut(s)	406
PinAI	ACCGGT	2 cut(s)	863, 1492
PleI	GAGTC	3 cut(s)	77, 224, 1348
PpsI	GAGTC	3 cut(s)	77, 224, 1348
PscI	ACATGT	1 cut(s)	669
Psp6I	CCWGG	4 cut(s)	137, 652, 997, 1349
PspFI	CCCAGC	2 cut(s)	519, 1039
PspGI	CCWGG	4 cut(s)	137, 652, 997, 1349
PspN4I	GGNNCC	4 cut(s)	162, 508, 569, 945
PspPI	GGNCC	3 cut(s)	160, 791, 1995
PstI	CTGCAG	1 cut(s)	1064
PstNI	CAGNNNCTG	1 cut(s)	1475
PsuI	RGATCY	4 cut(s)	409, 481, 535, 1016
PsyI	GACNNNGTC	1 cut(s)	1300
PvuII	CAGCTG	4 cut(s)	1043, 1484, 1691, 1784
RsaI	GTAC	5 cut(s)	476, 1405, 1467, 1473, 1488
RsaNI	GTAC	5 cut(s)	475, 1404, 1466, 1472, 1487
RseI	CAYNNNNRTG	3 cut(s)	449, 1362, 1578
SacII	CCGCGG	1 cut(s)	1102
SapI	GCTCTTC	2 cut(s)	530, 818
SaqAI	TTAA	1 cut(s)	492
Sau3AI	GATC	9 cut(s)	409, 481, 535, 690, 735, 1009, 1016, 1223, 1516
Sau96I	GGNCC	3 cut(s)	160, 791, 1995
ScaI	AGTACT	1 cut(s)	476
SchI	GAGTC	3 cut(s)	77, 225, 1348
ScrFI	CCNGG	5 cut(s)	139, 654, 999, 1351, 1712
SduI	GDGCHC	3 cut(s)	206, 456, 2092
SfaNI	GCATC	6 cut(s)	532, 588, 669, 1678, 1945, 1972
SfcI	CTRYAG	1 cut(s)	1060
Sfr303I	CCGCGG	1 cut(s)	1102
SfuI	TTCGAA	1 cut(s)	501
SgrAI	CRCCGGYG	1 cut(s)	863
SgrBI	CCGCGG	1 cut(s)	1102
SinI	GGWCC	2 cut(s)	160, 1995
SmiMI	CAYNNNNRTG	3 cut(s)	449, 1362, 1578
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
SpeI	ACTAGT	1 cut(s)	1462
Sse9I	AATT	5 cut(s)	92, 890, 1158, 1887, 2071
SseBI	AGGCCT	1 cut(s)	312
SspMI	CTAG	6 cut(s)	308, 1221, 1412, 1463, 1695, 2098
StuI	AGGCCT	1 cut(s)	312
StyD4I	CCNGG	5 cut(s)	137, 652, 997, 1349, 1710
StyI	CCWWGG	3 cut(s)	104, 114, 1745
TaaI	ACNGT	2 cut(s)	760, 1608
TaiI	ACGT	3 cut(s)	201, 846, 1051
TaqI	TCGA	5 cut(s)	179, 501, 528, 540, 1433
TaqII	GACCGA	1 cut(s)	1844
TasI	AATT	5 cut(s)	92, 890, 1158, 1887, 2071
TatI	WGTACW	1 cut(s)	474
TfiI	GAWTC	3 cut(s)	589, 858, 1618
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	1 cut(s)	961
TseFI	GTSAC	2 cut(s)	1111, 1551
TseI	GCWGC	9 cut(s)	68, 71, 74, 394, 720, 1043, 1062, 1691, 1784
Tsp45I	GTSAC	2 cut(s)	1111, 1551
TspDTI	ATGAA	2 cut(s)	836, 1352
TspGWI	ACGGA	2 cut(s)	476, 499
TspRI	CASTG	1 cut(s)	961
Tth111I	GACNNNGTC	1 cut(s)	1300
Van91I	CCANNNNNTGG	1 cut(s)	406
VpaK11BI	GGWCC	2 cut(s)	160, 1995
XapI	RAATTY	3 cut(s)	92, 1158, 2071
XceI	RCATGY	2 cut(s)	673, 1985
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1650
XspI	CTAG	6 cut(s)	308, 1221, 1412, 1463, 1695, 2098
ZraI	GACGTC	1 cut(s)	844
ZrmI	AGTACT	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.