Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0017485

Physical Location & Seq

Genomic Coordinates Reverse (-)

52171 .. 54567

Gene Structure 2397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1000500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2397 bp

ATGCCAATGTCTCCTCCTCCGTATTCTAGGAGGCACCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTGCTGCTGTTTGTTTTGTTGGCCTGCACAGCCGCCATCACTAGTACTGCTGTTACTGATACTGATACTGATGAAGTTGTCAAAGCAGTAGATCCAAGCCTCCTCCAGTTTGAGAACCCAAGGCTTCGCCAAGCCTACATTGCCCTCCAAGCTTGGAAGTCCTCCATCTTCTCCGACCCTTTCAATTTCACCGCCACCTGGAATGGCTCCGACGTCTGCTCCTACATGGGCGTATACTGTGCTCCAGCTGCTCCTAATTCAATTGGAGGCCGCGGCGGACGCGTGGTGGCTGGCATCGACCTCAACCACGCTGACATTGCCGGCTACCTCCCTCCGGAGCTTGGCCTCCTCTCGGACCTTGCACTCTTCCACATCAACTCCAATCGCTTCTGTGGCGTTGTCCCAAGCACCCTGCGCCGCCTGAAGCTGCTCCATGAGCTCGACCTCAGCAACAACCGCTTTGTCGGAGATTTCCCCAAAGTAGTGCTGTCTCTGCCTTCCCTCAAGTACTTGGATCTTCGCTTCAACGAGTTCGAAGGCTCCGTCCCCTCCCAGCTTTTCGACAAGGATCTCGACGCTGTTTTCCTCAACGACAACAGGTTCCGATTCGGCATCCCCCACAATCTCGGCAACTCCCCGGTTTCTGTGCTGGTGTTGGCCAACAACAAACTCGGCGGTTGCATCCCCGCCAGCATTGGAAAGATGGCCAACACCCTCAACGAGATCATCCTCCTCAACGACAACCTCACCGGCTGCTTGCCGCCCCAGATCGGCCTCCTTACCAATCTCACCGTCTTGGACGTCAGCTTCAACCAGCTTCAGGGTCCTCTTCCCTCCACCGTTGGCAAAAACATGAAGAGCTTGGAACAGCTCGACGTCGCCCACAACAGACTCACCGGCGTCATACTGGCGAGTGTTTGCCAGCTGCCTCAGCTGCAGAACTTTACCTATTCCTTCAACTATTTCAGCGGAGAGGCTCCTGCTTGTGCTGCCATCTCTAACAAAAATAATGTAATCCATGGTCGCAAGAACTGCATTCGTGGCAAGTCGGATCAGAGATCTGCAAGGGAATGTGCTTCCCCAGCTGCACGTCCCGTCGACTGCACCAAGCTCAAATGCAGCAGCAGCATTCCTGGAGGCGGCGGCGGCAATCCCGGTGGAGGCGGAGGCAGCAGTCCAGGAGGCCGCGACGGCTCTACTAAAAGGCCTCCACGGGTCTCAACACCGTCTCCGCCTGTTAGGAATAAGCCGCCTGCTCAAAGAAGGCCTCGGGTTTCAACACCCCCACCCCCACCCCCACCCCCGACTTCAGAGTCATCGCCTTCGACTAGATCGCATCCTCCGCCGCCACCATCACAGCCTTCTTCTTCTCCTTCTCCTCCCTCACCTGTAGCGCCTCATACGACACCTCCTCCTCCCTCCCATTCCCATTCCCATACAAAGCCCACTTACCATTCACCACCTCCGCCACCACCTAATCAAAGAGTATCACCCAGGACTCATCTTCCGCCCTCACCCCCTCCATCCAGTAGTCATGGTCATTGGACTCTGACGCCACCACCACCCTCCCAAGAGGTGTCACCAAGTACCCATCTAAGACCACCTCCGCCCCCACCACCTCACTCTAAACATGATATGGTGCCGCCGTCGCCTCCAGGCTATCATTACAATTATGCTTCGCCGCCACCACCACAGCACGCAGCAGCTCCCGATTATCAGCCCCACACGCCTCCCCCACCTCAACAGCACTCAACCAACGTCCCACCACCTCCAAGCTATCATAGTTACACAAGTCCACCGCCTCCACCTCCACCTTCACCACAATCTCCACCTTCATCACCGCATCCGCCACCTCCACTGCCATCACCATATGCATCTCCACCCCCACCAACACAGGAACATTATACTACAACACCACCTCCTTCACCCACACACGAGCATTATTCATCAAAAACCCCACCACCACACACAAGCACAGGTATAAGTAGTCCACCCCCAAATCATCCATCTCCTCCTCCTCCACCAAGTGAGCCATCGCATCCGGTGACTCCTCTGCCACCCACCGGTTGTGTGATTCCACCATCACCATCACCACCACCACCACCAAGCCAGCATACTGTGCCATCACCGGTATTAAACTTCGTACCGCCACCATCAAGCCATCACCACTTACCAATATCACCTCCGAAAGAACAACATTGGCATCCTCCACCACCACCAGCACATCAACAATTTCCTCCACCGACCCCGTTCGAAAACACGCCACTTCCACCAGTTATAGGAGTGTCATATGCTTCTCCTCCTCCCCCAGCAATACCCTACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0005198 GO:0005199 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0007275 GO:0008150 GO:0009505 GO:0009506 GO:0009653 GO:0009826 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016043 GO:0016049 GO:0022622 GO:0030054 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044464 GO:0048364 GO:0048468 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0055044 GO:0060560 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_6 LRR_8

Protein Analysis

799

Amino Acids

84.82

Weight (kDa)

8.91

Isoelectric Point (pI)

88.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	143 - 200	6.6e-07	Leucine rich repeat
LRR_8	PF13855	284 - 343	8.9e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62440
fragaria_vesca	FvH4_4g00070
malus_domestica	MD04G1000500.v1.1
prunus_persica	Prupe.1G000500_v2.0.a1
rosa_laevigata	RLG00000010279
rosa_multiflora	Rmu_sc0006822.1_g000025
rosa_roxburghii	Rroxscaffold_5G00332680
rosa_rugosa	Rorug03G0296900
rosa_samantha	Rh4BG000400 Rh4CG000300 Rh4DG000400
rosa_wichuraiana	Rw4G000850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1381
AatII	GACGTC	3 cut(s)	285, 873, 948
AccB1I	GGYRCC	2 cut(s)	33, 1708
AccI	GTMKAC	2 cut(s)	303, 1167
AccII	CGCG	3 cut(s)	342, 351, 1257
AccIII	TCCGGA	1 cut(s)	403
AclWI	GGATC	4 cut(s)	155, 591, 645, 1128
AcoI	YGGCCR	2 cut(s)	726, 774
AcuI	CTGAAG	3 cut(s)	512, 872, 1362
AcyI	GRCGYC	5 cut(s)	282, 870, 945, 969, 1622
AdeI	CACNNNGTG	1 cut(s)	2096
AfaI	GTAC	4 cut(s)	115, 578, 1657, 2214
AflIII	ACRYGT	1 cut(s)	349
AgeI	ACCGGT	2 cut(s)	2132, 2197
AgsI	TTSAA	6 cut(s)	253, 330, 595, 880, 1027, 1347
AhlI	ACTAGT	1 cut(s)	110
AjiI	CACGTC	1 cut(s)	1160
AjnI	CCWGG	5 cut(s)	266, 1201, 1246, 1562, 1723
Alw21I	GWGCWC	2 cut(s)	313, 510
Alw26I	GTCTC	4 cut(s)	15, 564, 1291, 1302
AlwI	GGATC	4 cut(s)	155, 591, 645, 1128
Ama87I	CYCGRG	1 cut(s)	1338
Aor13HI	TCCGGA	1 cut(s)	403
AoxI	GGCC	9 cut(s)	90, 337, 412, 726, 774, 841, 1252, 1274, 1334
ArsI	GACNNNNNNTTYG	2 cut(s)	597, 629
AsiGI	ACCGGT	2 cut(s)	2132, 2197
AspLEI	GCGC	2 cut(s)	486, 1465
AspS9I	GGNCC	2 cut(s)	424, 893
AsuC2I	CCSGG	2 cut(s)	707, 1224
AsuII	TTCGAA	2 cut(s)	603, 2322
AvaI	CYCGRG	1 cut(s)	1338
AvaII	GGWCC	2 cut(s)	424, 893
BalI	TGGCCA	2 cut(s)	728, 776
BanI	GGYRCC	2 cut(s)	33, 1708
BanII	GRGCYC	1 cut(s)	510
BauI	CACGAG	1 cut(s)	2003
Bbv12I	GWGCWC	2 cut(s)	313, 510
BbvCI	CCTCAGC	2 cut(s)	515, 999
BceAI	ACGGC	2 cut(s)	1276, 1699
BciT130I	CCWGG	5 cut(s)	268, 1203, 1248, 1564, 1725
BcnI	CCSGG	2 cut(s)	707, 1224
BcoDI	GTCTC	4 cut(s)	15, 564, 1291, 1302
BcuI	ACTAGT	1 cut(s)	110
BfaI	CTAG	3 cut(s)	27, 111, 1398
BfmI	CTRYAG	2 cut(s)	1004, 1458
BfoI	RGCGCY	1 cut(s)	1466
BglI	GCCNNNNNGGC	1 cut(s)	1260
BglII	AGATCT	1 cut(s)	1127
BmcAI	AGTACT	2 cut(s)	115, 578
Bme1390I	CCNGG	7 cut(s)	268, 707, 1203, 1224, 1248, 1564, 1725
Bme18I	GGWCC	2 cut(s)	424, 893
BmeT110I	CYCGRG	1 cut(s)	1338
BmgBI	CACGTC	1 cut(s)	1160
BmgT120I	GGNCC	2 cut(s)	424, 893
BmiI	GGNNCC	7 cut(s)	35, 277, 610, 671, 894, 1047, 1710
BmrFI	CCNGG	7 cut(s)	268, 707, 1203, 1224, 1248, 1564, 1725
BmsI	GCATC	8 cut(s)	372, 690, 759, 1414, 1921, 1952, 2116, 2281
BpmI	CTGGAG	4 cut(s)	158, 297, 1224, 1707
Bpu10I	CCTNAGC	2 cut(s)	515, 999
Bpu14I	TTCGAA	2 cut(s)	603, 2322
BpuEI	CTTGAG	1 cut(s)	557
BpuMI	CCSGG	2 cut(s)	707, 1224
BsaHI	GRCGYC	5 cut(s)	282, 870, 945, 969, 1622
BsaI	GGTCTC	1 cut(s)	1291
BsaJI	CCNNGG	7 cut(s)	188, 340, 705, 1087, 1280, 1337, 1562
BsaWI	WCCGGW	4 cut(s)	403, 2110, 2132, 2197
Bse118I	RCCGGY	5 cut(s)	389, 818, 965, 2132, 2197
Bse1I	ACTGG	4 cut(s)	175, 981, 1596, 2342
Bse3DI	GCAATG	2 cut(s)	207, 384
BseAI	TCCGGA	1 cut(s)	403
BseBI	CCWGG	5 cut(s)	268, 1203, 1248, 1564, 1725
BseDI	CCNNGG	7 cut(s)	188, 340, 705, 1087, 1280, 1337, 1562
BseGI	GGATG	9 cut(s)	681, 750, 795, 1405, 1592, 1912, 2071, 2107, 2272
BseMI	GCAATG	2 cut(s)	207, 384
BseMII	CTCAG	2 cut(s)	529, 1013
BseNI	ACTGG	4 cut(s)	175, 981, 1596, 2342
BseYI	CCCAGC	3 cut(s)	621, 1150, 2377
BsgI	GTGCAG	3 cut(s)	79, 1140, 1156
Bsh1236I	CGCG	3 cut(s)	342, 351, 1257
BshFI	GGCC	9 cut(s)	92, 339, 414, 728, 776, 843, 1254, 1276, 1336
BshNI	GGYRCC	2 cut(s)	33, 1708
BshTI	ACCGGT	2 cut(s)	2132, 2197
BsiHKAI	GWGCWC	2 cut(s)	313, 510
BsiHKCI	CYCGRG	1 cut(s)	1338
BsiSI	CCGG	9 cut(s)	390, 404, 707, 819, 966, 1224, 2111, 2133, 2198
BslFI	GGGAC	4 cut(s)	455, 599, 1146, 1814
BsmAI	GTCTC	4 cut(s)	15, 564, 1291, 1302
BsmBI	CGTCTC	1 cut(s)	1302
BsmFI	GGGAC	4 cut(s)	455, 599, 1146, 1814
BsmI	GAATGC	2 cut(s)	1104, 1197
BsnI	GGCC	9 cut(s)	92, 339, 414, 728, 776, 843, 1254, 1276, 1336
Bso31I	GGTCTC	1 cut(s)	1291
BsoBI	CYCGRG	1 cut(s)	1338
Bsp119I	TTCGAA	2 cut(s)	603, 2322
Bsp1286I	GDGCHC	2 cut(s)	313, 510
Bsp13I	TCCGGA	1 cut(s)	403
Bsp143I	GATC	8 cut(s)	160, 583, 637, 792, 837, 1120, 1127, 1400
Bsp19I	CCATGG	1 cut(s)	1087
BspANI	GGCC	9 cut(s)	92, 339, 414, 728, 776, 843, 1254, 1276, 1336
BspCNI	CTCAG	2 cut(s)	528, 1012
BspEI	TCCGGA	1 cut(s)	403
BspFNI	CGCG	3 cut(s)	342, 351, 1257
BspLI	GGNNCC	7 cut(s)	35, 277, 610, 671, 894, 1047, 1710
BspMAI	CTGCAG	1 cut(s)	1008
BspPI	GGATC	4 cut(s)	155, 591, 645, 1128
BspQI	GCTCTTC	1 cut(s)	920
BspT104I	TTCGAA	2 cut(s)	603, 2322
BspT107I	GGYRCC	2 cut(s)	33, 1708
BspTNI	GGTCTC	1 cut(s)	1291
BsrDI	GCAATG	2 cut(s)	207, 384
BsrFI	RCCGGY	5 cut(s)	389, 818, 965, 2132, 2197
BsrI	ACTGG	4 cut(s)	175, 981, 1596, 2342
BssAI	RCCGGY	5 cut(s)	389, 818, 965, 2132, 2197
BssECI	CCNNGG	7 cut(s)	188, 340, 705, 1087, 1280, 1337, 1562
BssMI	GATC	8 cut(s)	160, 583, 637, 792, 837, 1120, 1127, 1400
BssNAI	GTATAC	1 cut(s)	304
BssNI	GRCGYC	5 cut(s)	282, 870, 945, 969, 1622
BssSI	CACGAG	1 cut(s)	2003
BssT1I	CCWWGG	2 cut(s)	188, 1087
Bst1107I	GTATAC	1 cut(s)	304
Bst2BI	CACGAG	1 cut(s)	2003
Bst2UI	CCWGG	5 cut(s)	268, 1203, 1248, 1564, 1725
Bst4CI	ACNGT	5 cut(s)	308, 862, 910, 1296, 2188
Bst6I	CTCTTC	3 cut(s)	440, 903, 920
BstACI	GRCGYC	5 cut(s)	282, 870, 945, 969, 1622
BstAPI	GCANNNNNTGC	2 cut(s)	1101, 2188
BstBI	TTCGAA	2 cut(s)	603, 2322
BstC8I	GCNNGC	9 cut(s)	94, 361, 391, 760, 827, 992, 1323, 1767, 2180
BstDEI	CTNAG	3 cut(s)	515, 999, 1664
BstDSI	CCRYGG	3 cut(s)	340, 1087, 1280
BstF5I	GGATG	9 cut(s)	681, 750, 795, 1405, 1592, 1912, 2071, 2107, 2272
BstFNI	CGCG	3 cut(s)	342, 351, 1257
BstH2I	RGCGCY	1 cut(s)	1466
BstHHI	GCGC	2 cut(s)	486, 1465
BstKTI	GATC	8 cut(s)	163, 586, 640, 795, 840, 1123, 1130, 1403
BstMAI	GTCTC	4 cut(s)	15, 564, 1291, 1302
BstMBI	GATC	8 cut(s)	160, 583, 637, 792, 837, 1120, 1127, 1400
BstNI	CCWGG	5 cut(s)	268, 1203, 1248, 1564, 1725
BstSCI	CCNGG	7 cut(s)	266, 705, 1201, 1222, 1246, 1562, 1723
BstSFI	CTRYAG	2 cut(s)	1004, 1458
BstUI	CGCG	3 cut(s)	342, 351, 1257
BstX2I	RGATCY	4 cut(s)	160, 583, 637, 1127
BstYI	RGATCY	4 cut(s)	160, 583, 637, 1127
BstZ17I	GTATAC	1 cut(s)	304
BsuRI	GGCC	9 cut(s)	92, 339, 414, 728, 776, 843, 1254, 1276, 1336
BtgI	CCRYGG	3 cut(s)	340, 1087, 1280
BtgZI	GCGATG	2 cut(s)	1371, 2088
BtrI	CACGTC	1 cut(s)	1160
BtsCI	GGATG	9 cut(s)	681, 750, 795, 1405, 1592, 1912, 2071, 2107, 2272
BtsI	GCAGTG	1 cut(s)	1925
BtsIMutI	CAGTG	1 cut(s)	1925
Cac8I	GCNNGC	9 cut(s)	94, 361, 391, 760, 827, 992, 1323, 1767, 2180
CfoI	GCGC	2 cut(s)	486, 1465
Cfr10I	RCCGGY	5 cut(s)	389, 818, 965, 2132, 2197
Cfr13I	GGNCC	2 cut(s)	424, 893
Cfr42I	CCGCGG	1 cut(s)	343
CseI	GACGC	4 cut(s)	357, 653, 958, 1630
Csp6I	GTAC	4 cut(s)	114, 577, 1656, 2213
CspAI	ACCGGT	2 cut(s)	2132, 2197
CspCI	CAANNNNNGTGG	2 cut(s)	1207, 1242
CviAII	CATG	6 cut(s)	295, 503, 922, 1088, 1604, 1700
CviQI	GTAC	4 cut(s)	114, 577, 1656, 2213
DdeI	CTNAG	3 cut(s)	515, 999, 1664
DpnI	GATC	8 cut(s)	162, 585, 639, 794, 839, 1122, 1129, 1402
DpnII	GATC	8 cut(s)	160, 583, 637, 792, 837, 1120, 1127, 1400
DraIII	CACNNNGTG	1 cut(s)	2096
DrdI	GACNNNNNNGTC	1 cut(s)	1381
DseDI	GACNNNNNNGTC	1 cut(s)	1381
EaeI	YGGCCR	2 cut(s)	726, 774
Eam1104I	CTCTTC	3 cut(s)	440, 903, 920
EarI	CTCTTC	3 cut(s)	440, 903, 920
EciI	GGCGGA	8 cut(s)	360, 1248, 1290, 1401, 1524, 1566, 1665, 1905
Ecl136II	GAGCTC	1 cut(s)	508
Eco130I	CCWWGG	2 cut(s)	188, 1087
Eco147I	AGGCCT	2 cut(s)	1276, 1336
Eco24I	GRGCYC	1 cut(s)	510
Eco31I	GGTCTC	1 cut(s)	1291
Eco47I	GGWCC	2 cut(s)	424, 893
Eco53kI	GAGCTC	1 cut(s)	508
Eco57I	CTGAAG	3 cut(s)	512, 872, 1362
Eco88I	CYCGRG	1 cut(s)	1338
EcoICRI	GAGCTC	1 cut(s)	508
EcoO109I	RGGNCCY	1 cut(s)	893
EcoRII	CCWGG	5 cut(s)	266, 1201, 1246, 1562, 1723
EcoT14I	CCWWGG	2 cut(s)	188, 1087
EcoT22I	ATGCAT	1 cut(s)	1945
EcoT38I	GRGCYC	1 cut(s)	510
ErhI	CCWWGG	2 cut(s)	188, 1087
Esp3I	CGTCTC	1 cut(s)	1302
FaeI	CATG	6 cut(s)	298, 506, 925, 1091, 1607, 1703
FaqI	GGGAC	4 cut(s)	455, 599, 1146, 1814
FatI	CATG	6 cut(s)	294, 502, 921, 1087, 1603, 1699
FauI	CCCGC	1 cut(s)	763
FauNDI	CATATG	2 cut(s)	1939, 2359
FblI	GTMKAC	2 cut(s)	303, 1167
FokI	GGATG	9 cut(s)	668, 737, 782, 1392, 1579, 1899, 2058, 2094, 2259
FriOI	GRGCYC	1 cut(s)	510
FspBI	CTAG	3 cut(s)	27, 111, 1398
GlaI	GCGC	2 cut(s)	485, 1464
GsaI	CCCAGC	3 cut(s)	625, 1154, 2381
GsuI	CTGGAG	4 cut(s)	158, 297, 1224, 1707
HaeII	RGCGCY	1 cut(s)	1466
HaeIII	GGCC	9 cut(s)	92, 339, 414, 728, 776, 843, 1254, 1276, 1336
HapII	CCGG	9 cut(s)	390, 404, 707, 819, 966, 1224, 2111, 2133, 2198
HgaI	GACGC	4 cut(s)	357, 653, 958, 1630
HhaI	GCGC	2 cut(s)	486, 1465
Hin1I	GRCGYC	5 cut(s)	282, 870, 945, 969, 1622
Hin1II	CATG	6 cut(s)	298, 506, 925, 1091, 1607, 1703
Hin6I	GCGC	2 cut(s)	484, 1463
HinP1I	GCGC	2 cut(s)	484, 1463
HincII	GTYRAC	1 cut(s)	1168
HindII	GTYRAC	1 cut(s)	1168
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	7 cut(s)	675, 960, 1382, 1567, 1615, 2116, 2143
HpaII	CCGG	9 cut(s)	390, 404, 707, 819, 966, 1224, 2111, 2133, 2198
Hpy166II	GTNNAC	4 cut(s)	304, 1168, 1865, 2060
Hpy188III	TCNNGA	3 cut(s)	404, 641, 1778
Hpy8I	GTNNAC	4 cut(s)	304, 1168, 1865, 2060
Hpy99I	CGWCG	7 cut(s)	284, 647, 947, 950, 1169, 1262, 1720
HpyCH4III	ACNGT	5 cut(s)	308, 862, 910, 1296, 2188
HpyCH4IV	ACGT	5 cut(s)	282, 870, 945, 1159, 1827
HpyF3I	CTNAG	3 cut(s)	515, 999, 1664
HpySE526I	ACGT	5 cut(s)	282, 870, 945, 1159, 1827
Hsp92I	GRCGYC	5 cut(s)	282, 870, 945, 969, 1622
Hsp92II	CATG	6 cut(s)	298, 506, 925, 1091, 1607, 1703
HspAI	GCGC	2 cut(s)	484, 1463
Kpn2I	TCCGGA	1 cut(s)	403
KroI	GCCGGC	1 cut(s)	389
KroNI	GCCGGC	1 cut(s)	391
KspI	CCGCGG	1 cut(s)	343
Kzo9I	GATC	8 cut(s)	160, 583, 637, 792, 837, 1120, 1127, 1400
LguI	GCTCTTC	1 cut(s)	920
LmnI	GCTCC	9 cut(s)	281, 293, 316, 325, 406, 504, 614, 1051, 1780
LweI	GCATC	8 cut(s)	372, 690, 759, 1414, 1921, 1952, 2116, 2281
MaeI	CTAG	3 cut(s)	27, 111, 1398
MaeII	ACGT	5 cut(s)	282, 870, 945, 1159, 1827
MaeIII	GTNAC	4 cut(s)	121, 1647, 1853, 2113
MalI	GATC	8 cut(s)	162, 585, 639, 794, 839, 1122, 1129, 1402
MboI	GATC	8 cut(s)	160, 583, 637, 792, 837, 1120, 1127, 1400
MboII	GAAGA	8 cut(s)	229, 427, 578, 890, 937, 1425, 1428, 1565
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	4 cut(s)	160, 583, 637, 1127
MhlI	GDGCHC	2 cut(s)	313, 510
MlsI	TGGCCA	2 cut(s)	728, 776
MluCI	AATT	5 cut(s)	253, 325, 330, 1738, 2300
MluI	ACGCGT	1 cut(s)	349
MluNI	TGGCCA	2 cut(s)	728, 776
MlyI	GAGTC	5 cut(s)	954, 1391, 1561, 1609, 2110
MmeI	TCCRAC	4 cut(s)	267, 303, 514, 1098
Mox20I	TGGCCA	2 cut(s)	728, 776
Mph1103I	ATGCAT	1 cut(s)	1945
MroI	TCCGGA	1 cut(s)	403
MroNI	GCCGGC	1 cut(s)	389
MscI	TGGCCA	2 cut(s)	728, 776
MseI	TTAA	1 cut(s)	2204
Msp20I	TGGCCA	2 cut(s)	728, 776
MspA1I	CMGCKG	6 cut(s)	317, 342, 994, 1003, 1038, 1154
MspI	CCGG	9 cut(s)	390, 404, 707, 819, 966, 1224, 2111, 2133, 2198
MspR9I	CCNGG	7 cut(s)	268, 707, 1203, 1224, 1248, 1564, 1725
MunI	CAATTG	1 cut(s)	330
Mva1269I	GAATGC	2 cut(s)	1104, 1197
MvaI	CCWGG	5 cut(s)	268, 1203, 1248, 1564, 1725
MvnI	CGCG	3 cut(s)	342, 351, 1257
NaeI	GCCGGC	1 cut(s)	391
NciI	CCSGG	2 cut(s)	707, 1224
NcoI	CCATGG	1 cut(s)	1087
NdeI	CATATG	2 cut(s)	1939, 2359
NdeII	GATC	8 cut(s)	160, 583, 637, 792, 837, 1120, 1127, 1400
NgoMIV	GCCGGC	1 cut(s)	389
NlaIII	CATG	6 cut(s)	298, 506, 925, 1091, 1607, 1703
NlaIV	GGNNCC	7 cut(s)	35, 277, 610, 671, 894, 1047, 1710
NmeAIII	GCCGAG	2 cut(s)	675, 720
NmuCI	GTSAC	2 cut(s)	1647, 2113
NsiI	ATGCAT	1 cut(s)	1945
NspV	TTCGAA	2 cut(s)	603, 2322
PceI	AGGCCT	2 cut(s)	1276, 1336
PciSI	GCTCTTC	1 cut(s)	920
PcsI	WCGNNNNNNNCGW	1 cut(s)	609
PctI	GAATGC	2 cut(s)	1104, 1197
PdiI	GCCGGC	1 cut(s)	391
PfeI	GAWTC	2 cut(s)	675, 2143
PfoI	TCCNGGA	2 cut(s)	1201, 1246
PinAI	ACCGGT	2 cut(s)	2132, 2197
PleI	GAGTC	5 cut(s)	954, 1390, 1561, 1609, 2110
PpsI	GAGTC	5 cut(s)	954, 1390, 1561, 1609, 2110
PpuMI	RGGWCCY	1 cut(s)	893
Psp124BI	GAGCTC	1 cut(s)	510
Psp5II	RGGWCCY	1 cut(s)	893
Psp6I	CCWGG	5 cut(s)	266, 1201, 1246, 1562, 1723
PspFI	CCCAGC	3 cut(s)	621, 1150, 2377
PspGI	CCWGG	5 cut(s)	266, 1201, 1246, 1562, 1723
PspN4I	GGNNCC	7 cut(s)	35, 277, 610, 671, 894, 1047, 1710
PspPI	GGNCC	2 cut(s)	424, 893
PspPPI	RGGWCCY	1 cut(s)	893
PstI	CTGCAG	1 cut(s)	1008
PsuI	RGATCY	4 cut(s)	160, 583, 637, 1127
PvuII	CAGCTG	4 cut(s)	317, 994, 1003, 1154
RsaI	GTAC	4 cut(s)	115, 578, 1657, 2214
RsaNI	GTAC	4 cut(s)	114, 577, 1656, 2213
SacI	GAGCTC	1 cut(s)	510
SacII	CCGCGG	1 cut(s)	343
SalI	GTCGAC	1 cut(s)	1166
SapI	GCTCTTC	1 cut(s)	920
SaqAI	TTAA	1 cut(s)	2204
Sau3AI	GATC	8 cut(s)	160, 583, 637, 792, 837, 1120, 1127, 1400
Sau96I	GGNCC	2 cut(s)	424, 893
ScaI	AGTACT	2 cut(s)	115, 578
SchI	GAGTC	5 cut(s)	954, 1391, 1561, 1609, 2110
ScrFI	CCNGG	7 cut(s)	268, 707, 1203, 1224, 1248, 1564, 1725
SduI	GDGCHC	2 cut(s)	313, 510
SfaNI	GCATC	8 cut(s)	372, 690, 759, 1414, 1921, 1952, 2116, 2281
SfcI	CTRYAG	2 cut(s)	1004, 1458
Sfr303I	CCGCGG	1 cut(s)	343
SfuI	TTCGAA	2 cut(s)	603, 2322
SgrAI	CRCCGGYG	1 cut(s)	965
SgrBI	CCGCGG	1 cut(s)	343
SinI	GGWCC	2 cut(s)	424, 893
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
SpeI	ACTAGT	1 cut(s)	110
Sse9I	AATT	5 cut(s)	253, 325, 330, 1738, 2300
SseBI	AGGCCT	2 cut(s)	1276, 1336
SspMI	CTAG	3 cut(s)	27, 111, 1398
SstI	GAGCTC	1 cut(s)	510
StuI	AGGCCT	2 cut(s)	1276, 1336
StyD4I	CCNGG	7 cut(s)	266, 705, 1201, 1222, 1246, 1562, 1723
StyI	CCWWGG	2 cut(s)	188, 1087
TaaI	ACNGT	5 cut(s)	308, 862, 910, 1296, 2188
TaiI	ACGT	5 cut(s)	285, 873, 948, 1162, 1830
TaqI	TCGA	9 cut(s)	366, 510, 603, 630, 642, 942, 1167, 1394, 2322
TasI	AATT	5 cut(s)	253, 325, 330, 1738, 2300
TatI	WGTACW	2 cut(s)	113, 576
TfiI	GAWTC	2 cut(s)	675, 2143
Tru1I	TTAA	1 cut(s)	2204
Tru9I	TTAA	1 cut(s)	2204
TscAI	CASTG	1 cut(s)	1932
TseFI	GTSAC	2 cut(s)	1647, 2113
Tsp45I	GTSAC	2 cut(s)	1647, 2113
TspDTI	ATGAA	4 cut(s)	156, 938, 1893, 2004
TspGWI	ACGGA	2 cut(s)	9, 601
TspRI	CASTG	1 cut(s)	1932
VpaK11BI	GGWCC	2 cut(s)	424, 893
XmiI	GTMKAC	2 cut(s)	303, 1167
XspI	CTAG	3 cut(s)	27, 111, 1398
ZraI	GACGTC	3 cut(s)	283, 871, 946
ZrmI	AGTACT	2 cut(s)	115, 578
Zsp2I	ATGCAT	1 cut(s)	1945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.