AT1G62730

NADH dehydrogenase (ubiquinone) complex I, assembly factor 6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015411
Physical Location & Seq
Reverse (-)
23229059 .. 23230818
1760 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G62730.1

Sequence Viewer

Length: 915 bp
ATGAATGGAGGAGGCTCGAGTAGTTTGCGTTCAGCATTGTCCTATTGTGTGCAGCAAGTACGAAACTATGACTATCATCACTACCTCTGTCTCCTTGAACTCCCAACTGAGATGCGTAAAGCAGCATTTGCTCTCCGGGCTTTTAATGTAGAAACCGCAAGAGCCATGGATGTTGCATCTGATCCCAAAATCGGCTTGATGCGGTTACTTTGGTGGCAAGAAGCAATTGACAAACTCTACACCAAAAAGCCCATAAACCATCCAGCTGCACAAGCTCTGTCTTGGGCAATATCAGAACATAACATCAGTAAACCTTGGCTAAAACGCTCAGTTGACGCTAGAATCCGAGATGCCCAAAGAGAAGTAGACGATATACCAGAGAGCATTGCGGAGCTAGAGAAATACGCAGAAGACACAGTTTCCACTCTTCTGTACAATACACTCCAAGCAGGCGGAATTAGTTCAACAACAGCTGATCATGCAGCTTCACACATTGGTAAAGCCAGTGGTCTTGTCTTGCTGCTTAAATCATTACCGTACCACTGTACCAGAAACCGTCACCAGAGTTACATCCCTGCAGATCTCGCTGAGAAGCACGGGTTGCTCGTGAAACAAGGTGGACGATTAGAAATTCTTCTGGATAACGATTCAAGAGAAGGACTAAGCAATGTCGTGTTTGAGATTGCATCTGTTGCCAATGCACATCTCCTGAAAGCCCGTGAACTGGCGGGAAAGGTTCCTGCAGAAGCTAAACCGGTACTGCTTCATTCTGTGCCGGTACAAGTTCTTCTGGATTCGTTAAATAAAGTACAATTCGATGTGTTTGATCCCAGGATTCAAAGAGGAGTTCTTGGTGTTCCTCCACTCTTGTTTCAGTTTAAACTCAAGTGGTATTCATGGAGAGCAATGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
SQS_PSY

Protein Analysis

304

Amino Acids

34.03

Weight (kDa)

8.84

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQS_PSY PF00494 20 - 280 5e-57 Squalene/phytoene synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015411)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62730 AT1G62730
fragaria_vesca FvH4_5g00371
malus_domestica MD04G1082000.v1.1
prunus_persica Prupe.5G076400_v2.0.a1
pyrus_communis pycom04g07390
rosa_chinensis RchiOBHm_Chr7g0202141
rosa_laevigata RLG00000003622
rosa_multiflora Rmu_co8054622.1_g000001
rosa_roxburghii Rroxscaffold_3G00254810
rosa_rugosa Rorug07G0068400
rosa_samantha Rh7AG195800 Rh7BG197100 Rh7CG206900 Rh7DG202400
rosa_wichuraiana Rw7G017150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 366
AciI CCGC 5 cut(s) 156, 202, 389, 453, 728
AclWI GGATC 2 cut(s) 176, 821
AcsI RAATTY 1 cut(s) 630
AfaI GTAC 7 cut(s) 60, 434, 539, 547, 759, 780, 810
AfiI CCNNNNNNNGG 2 cut(s) 191, 724
AgeI ACCGGT 1 cut(s) 754
AgsI TTSAA 4 cut(s) 98, 465, 651, 839
AjnI CCWGG 1 cut(s) 830
AluBI AGCT 6 cut(s) 266, 275, 394, 473, 485, 749
AluI AGCT 6 cut(s) 266, 275, 394, 473, 485, 749
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 2 cut(s) 176, 821
Ama87I CYCGRG 1 cut(s) 16
ApeKI GCWGC 5 cut(s) 52, 122, 266, 482, 520
ApoI RAATTY 1 cut(s) 630
AsiGI ACCGGT 1 cut(s) 754
Asp700I GAANNNNTTC 2 cut(s) 460, 633
AsuC2I CCSGG 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 551
AvaI CYCGRG 1 cut(s) 16
BaeI ACNNNNGTAYC 2 cut(s) 529, 562
BarI GAAGNNNNNNTAC 2 cut(s) 771, 803
BauI CACGAG 1 cut(s) 605
BbsI GAAGAC 1 cut(s) 417
BbvI GCAGC 5 cut(s) 64, 134, 253, 494, 507
BccI CCATC 1 cut(s) 267
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BciT130I CCWGG 1 cut(s) 832
BclI TGATCA 1 cut(s) 475
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 2 cut(s) 339, 395
BfmI CTRYAG 2 cut(s) 576, 741
BglII AGATCT 1 cut(s) 580
BisI GCNGC 5 cut(s) 53, 123, 267, 483, 521
BlsI GCNGC 5 cut(s) 54, 124, 268, 484, 522
Bme1390I CCNGG 2 cut(s) 137, 832
BmeT110I CYCGRG 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 738
BmrFI CCNGG 2 cut(s) 137, 832
BmsI GCATC 5 cut(s) 102, 185, 189, 340, 695
BpiI GAAGAC 1 cut(s) 417
BpuEI CTTGAG 1 cut(s) 869
BpuMI CCSGG 1 cut(s) 137
BsaJI CCNNGG 3 cut(s) 165, 314, 830
BsaWI WCCGGW 1 cut(s) 754
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 724
Bse118I RCCGGY 2 cut(s) 754, 775
Bse1I ACTGG 2 cut(s) 504, 729
Bse3DI GCAATG 3 cut(s) 384, 673, 912
BseBI CCWGG 1 cut(s) 832
BseDI CCNNGG 3 cut(s) 165, 314, 830
BseGI GGATG 3 cut(s) 175, 259, 570
BseLI CCNNNNNNNGG 2 cut(s) 191, 724
BseMI GCAATG 3 cut(s) 384, 673, 912
BseMII CTCAG 3 cut(s) 99, 342, 579
BseNI ACTGG 2 cut(s) 504, 729
BseRI GAGGAG 2 cut(s) 24, 858
BseXI GCAGC 5 cut(s) 64, 134, 253, 494, 507
BsgI GTGCAG 2 cut(s) 71, 252
BshTI ACCGGT 1 cut(s) 754
BsiHKCI CYCGRG 1 cut(s) 16
BsiSI CCGG 3 cut(s) 136, 755, 776
BslI CCNNNNNNNGG 2 cut(s) 191, 724
BsmAI GTCTC 1 cut(s) 95
BsoBI CYCGRG 1 cut(s) 16
Bsp1407I TGTACA 1 cut(s) 432
Bsp143I GATC 4 cut(s) 181, 475, 580, 826
Bsp19I CCATGG 1 cut(s) 165
BspACI CCGC 5 cut(s) 156, 202, 389, 453, 728
BspCNI CTCAG 3 cut(s) 100, 341, 580
BspLI GGNNCC 1 cut(s) 738
BspMAI CTGCAG 2 cut(s) 580, 745
BspPI GGATC 2 cut(s) 176, 821
BsrDI GCAATG 3 cut(s) 384, 673, 912
BsrFI RCCGGY 2 cut(s) 754, 775
BsrGI TGTACA 1 cut(s) 432
BsrI ACTGG 2 cut(s) 504, 729
BssAI RCCGGY 2 cut(s) 754, 775
BssECI CCNNGG 3 cut(s) 165, 314, 830
BssMI GATC 4 cut(s) 181, 475, 580, 826
BssSI CACGAG 1 cut(s) 605
BssT1I CCWWGG 2 cut(s) 165, 314
Bst2BI CACGAG 1 cut(s) 605
Bst2UI CCWGG 1 cut(s) 832
Bst4CI ACNGT 4 cut(s) 418, 537, 545, 557
Bst6I CTCTTC 1 cut(s) 432
BstAPI GCANNNNNTGC 3 cut(s) 128, 601, 692
BstAUI TGTACA 1 cut(s) 432
BstC8I GCNNGC 1 cut(s) 451
BstDEI CTNAG 4 cut(s) 108, 328, 588, 662
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 3 cut(s) 175, 259, 570
BstKTI GATC 4 cut(s) 184, 478, 583, 829
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 4 cut(s) 181, 475, 580, 826
BstMWI GCNNNNNNNGC 7 cut(s) 128, 137, 272, 479, 584, 601, 692
BstNI CCWGG 1 cut(s) 832
BstSCI CCNGG 2 cut(s) 135, 830
BstSFI CTRYAG 2 cut(s) 576, 741
BstV1I GCAGC 5 cut(s) 64, 134, 253, 494, 507
BstV2I GAAGAC 1 cut(s) 417
BstX2I RGATCY 1 cut(s) 580
BstYI RGATCY 1 cut(s) 580
BtgI CCRYGG 1 cut(s) 165
BtsCI GGATG 3 cut(s) 175, 259, 570
BtsIMutI CAGTG 2 cut(s) 511, 541
Cac8I GCNNGC 1 cut(s) 451
Cfr10I RCCGGY 2 cut(s) 754, 775
CseI GACGC 1 cut(s) 344
Csp6I GTAC 7 cut(s) 59, 433, 538, 546, 758, 779, 809
CspAI ACCGGT 1 cut(s) 754
CviAII CATG 3 cut(s) 166, 479, 897
CviQI GTAC 7 cut(s) 59, 433, 538, 546, 758, 779, 809
DdeI CTNAG 4 cut(s) 108, 328, 588, 662
DpnI GATC 4 cut(s) 183, 477, 582, 828
DpnII GATC 4 cut(s) 181, 475, 580, 826
DraI TTTAAA 1 cut(s) 880
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
EciI GGCGGA 1 cut(s) 468
Eco130I CCWWGG 2 cut(s) 165, 314
Eco88I CYCGRG 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 830
EcoT14I CCWWGG 2 cut(s) 165, 314
ErhI CCWWGG 2 cut(s) 165, 314
FaeI CATG 3 cut(s) 169, 482, 900
FaiI YATR 7 cut(s) 69, 167, 254, 300, 374, 480, 898
FatI CATG 3 cut(s) 165, 478, 896
FauI CCCGC 1 cut(s) 721
FbaI TGATCA 1 cut(s) 475
FblI GTMKAC 1 cut(s) 366
Fnu4HI GCNGC 5 cut(s) 53, 123, 267, 483, 521
FokI GGATG 3 cut(s) 182, 246, 557
Fsp4HI GCNGC 5 cut(s) 53, 123, 267, 483, 521
FspBI CTAG 2 cut(s) 339, 395
GluI GCNGC 5 cut(s) 53, 123, 267, 483, 521
HapII CCGG 3 cut(s) 136, 755, 776
HgaI GACGC 1 cut(s) 344
Hin1II CATG 3 cut(s) 169, 482, 900
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HinfI GANTC 4 cut(s) 342, 647, 794, 835
HpaII CCGG 3 cut(s) 136, 755, 776
HphI GGTGA 1 cut(s) 551
Hpy166II GTNNAC 5 cut(s) 311, 334, 367, 620, 722
Hpy188I TCNGA 3 cut(s) 181, 295, 347
Hpy188III TCNNGA 5 cut(s) 607, 638, 651, 709, 791
Hpy8I GTNNAC 5 cut(s) 311, 334, 367, 620, 722
HpyAV CCTTC 1 cut(s) 650
HpyCH4III ACNGT 4 cut(s) 418, 537, 545, 557
HpyCH4V TGCA 8 cut(s) 52, 176, 269, 482, 578, 686, 701, 743
HpyF10VI GCNNNNNNNGC 7 cut(s) 128, 137, 272, 479, 584, 601, 692
HpyF3I CTNAG 4 cut(s) 108, 328, 588, 662
Hsp92II CATG 3 cut(s) 169, 482, 900
Ksp22I TGATCA 1 cut(s) 475
Kzo9I GATC 4 cut(s) 181, 475, 580, 826
LmnI GCTCC 1 cut(s) 391
Lsp1109I GCAGC 5 cut(s) 64, 134, 253, 494, 507
LweI GCATC 5 cut(s) 102, 185, 189, 340, 695
MaeI CTAG 2 cut(s) 339, 395
MaeIII GTNAC 3 cut(s) 204, 557, 566
MalI GATC 4 cut(s) 183, 477, 582, 828
MboI GATC 4 cut(s) 181, 475, 580, 826
MboII GAAGA 4 cut(s) 419, 422, 626, 779
MfeI CAATTG 1 cut(s) 225
MflI RGATCY 1 cut(s) 580
MluCI AATT 4 cut(s) 225, 456, 630, 812
MnlI CCTC 4 cut(s) 5, 95, 836, 870
MroXI GAANNNNTTC 2 cut(s) 460, 633
MseI TTAA 4 cut(s) 144, 525, 800, 879
MspA1I CMGCKG 2 cut(s) 266, 473
MspI CCGG 3 cut(s) 136, 755, 776
MspR9I CCNGG 2 cut(s) 137, 832
MssI GTTTAAAC 1 cut(s) 880
MunI CAATTG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 832
MwoI GCNNNNNNNGC 7 cut(s) 128, 137, 272, 479, 584, 601, 692
NciI CCSGG 1 cut(s) 137
NcoI CCATGG 1 cut(s) 165
NdeII GATC 4 cut(s) 181, 475, 580, 826
NlaIII CATG 3 cut(s) 169, 482, 900
NlaIV GGNNCC 1 cut(s) 738
NmuCI GTSAC 1 cut(s) 557
PaeR7I CTCGAG 1 cut(s) 16
PcsI WCGNNNNNNNCGW 1 cut(s) 603
PdmI GAANNNNTTC 2 cut(s) 460, 633
PfeI GAWTC 4 cut(s) 342, 647, 794, 835
PinAI ACCGGT 1 cut(s) 754
PkrI GCNGC 5 cut(s) 54, 124, 268, 484, 522
PmeI GTTTAAAC 1 cut(s) 880
Psp6I CCWGG 1 cut(s) 830
PspGI CCWGG 1 cut(s) 830
PspN4I GGNNCC 1 cut(s) 738
PspXI VCTCGAGB 1 cut(s) 16
PsrI GAACNNNNNNTAC 2 cut(s) 13, 45
PstI CTGCAG 2 cut(s) 580, 745
PsuI RGATCY 1 cut(s) 580
PvuII CAGCTG 2 cut(s) 266, 473
RsaI GTAC 7 cut(s) 60, 434, 539, 547, 759, 780, 810
RsaNI GTAC 7 cut(s) 59, 433, 538, 546, 758, 779, 809
SaqAI TTAA 4 cut(s) 144, 525, 800, 879
SatI GCNGC 5 cut(s) 53, 123, 267, 483, 521
Sau3AI GATC 4 cut(s) 181, 475, 580, 826
ScrFI CCNGG 2 cut(s) 137, 832
SfaNI GCATC 5 cut(s) 102, 185, 189, 340, 695
SfcI CTRYAG 2 cut(s) 576, 741
Sfr274I CTCGAG 1 cut(s) 16
SlaI CTCGAG 1 cut(s) 16
SmlI CTYRAG 2 cut(s) 16, 884
SmoI CTYRAG 2 cut(s) 16, 884
Sse9I AATT 4 cut(s) 225, 456, 630, 812
SsiI CCGC 5 cut(s) 156, 202, 389, 453, 728
SspMI CTAG 2 cut(s) 339, 395
StyD4I CCNGG 2 cut(s) 135, 830
StyI CCWWGG 2 cut(s) 165, 314
TaaI ACNGT 4 cut(s) 418, 537, 545, 557
TaqI TCGA 2 cut(s) 17, 816
TasI AATT 4 cut(s) 225, 456, 630, 812
TatI WGTACW 2 cut(s) 432, 808
TfiI GAWTC 4 cut(s) 342, 647, 794, 835
Tru1I TTAA 4 cut(s) 144, 525, 800, 879
Tru9I TTAA 4 cut(s) 144, 525, 800, 879
TscAI CASTG 2 cut(s) 511, 548
TseFI GTSAC 1 cut(s) 557
TseI GCWGC 5 cut(s) 52, 122, 266, 482, 520
Tsp45I GTSAC 1 cut(s) 557
TspDTI ATGAA 3 cut(s) 17, 755, 885
TspRI CASTG 2 cut(s) 511, 548
XapI RAATTY 1 cut(s) 630
XhoI CTCGAG 1 cut(s) 16
XmiI GTMKAC 1 cut(s) 366
XmnI GAANNNNTTC 2 cut(s) 460, 633
XspI CTAG 2 cut(s) 339, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.