Rorug07G0068400

NADH dehydrogenase (ubiquinone) complex I, assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0015411
Physical Location & Seq
Forward (+)
5203532 .. 5204068
537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0068400.1

Sequence Viewer

Length: 537 bp
ATGACTCCTCTTATCAATAAGAATAAACTTGCCATCCTTGCAAACAAGGAAACTGAAGCAGTGGTTGACATTATTCCTAATGAATTTGCTCTAGTTGTTGGAACAACTATTTTGGAGGACCCTAAGGTTCATATTACTGATGAGAATGACGAAGTTGACAGTGATAATGAAATGTGTGATGAAGATGTGAGCTCCAATATGAAGCAAAAGGCTTATAGTAGTGCCCAGCCAACCAACCCCCTTTCTTCACATAGTGGTCAAAGTTGGCATGATATGGTGGAAGAGGAAAATCTGTTTGATCTGGCAGATTTATCTACGGGTCATGCTCCCCCGGGATTCGAACATGTTGCAACTTTAGCCAAGGATGTTTCATTAATTACTGGTCAAGGAGTTAATGAAGATACAGAGAATGGTTTCACACCGGTTCTTTCTAAGTCTCAAAAGAAGAAACAAAGACGACAAGCTACTCAAGCTCTTGCTCGTGAAACTCCTTATCCAAAGAGGGACAGAACAAAGAATAAAAAGTACAATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
SQS_PSY

Protein Analysis

178

Amino Acids

19.78

Weight (kDa)

5.03

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015411)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62730 AT1G62730
fragaria_vesca FvH4_5g00371
malus_domestica MD04G1082000.v1.1
prunus_persica Prupe.5G076400_v2.0.a1
pyrus_communis pycom04g07390
rosa_chinensis RchiOBHm_Chr7g0202141
rosa_laevigata RLG00000003622
rosa_multiflora Rmu_co8054622.1_g000001
rosa_roxburghii Rroxscaffold_3G00254810
rosa_rugosa Rorug07G0068400
rosa_samantha Rh7AG195800 Rh7BG197100 Rh7CG206900 Rh7DG202400
rosa_wichuraiana Rw7G017150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 83
AcuI CTGAAG 1 cut(s) 75
AdeI CACNNNGTG 1 cut(s) 254
AfaI GTAC 1 cut(s) 527
AflIII ACRYGT 1 cut(s) 343
AgeI ACCGGT 1 cut(s) 421
AluBI AGCT 3 cut(s) 192, 464, 473
AluI AGCT 3 cut(s) 192, 464, 473
Alw21I GWGCWC 1 cut(s) 194
Alw26I GTCTC 1 cut(s) 441
Ama87I CYCGRG 1 cut(s) 331
ApoI RAATTY 1 cut(s) 83
AseI ATTAAT 1 cut(s) 374
AsiGI ACCGGT 1 cut(s) 421
Asp700I GAANNNNTTC 1 cut(s) 413
AspS9I GGNCC 1 cut(s) 118
AsuC2I CCSGG 2 cut(s) 332, 333
AsuII TTCGAA 1 cut(s) 339
AvaI CYCGRG 1 cut(s) 331
AvaII GGWCC 1 cut(s) 118
AxyI CCTNAGG 1 cut(s) 123
BaeGI GKGCMC 1 cut(s) 226
BanII GRGCYC 1 cut(s) 194
BauI CACGAG 1 cut(s) 480
Bbv12I GWGCWC 1 cut(s) 194
BccI CCATC 1 cut(s) 41
BcgI CGANNNNNNTGC 2 cut(s) 329, 363
BcnI CCSGG 2 cut(s) 332, 333
BcoDI GTCTC 1 cut(s) 441
BfaI CTAG 1 cut(s) 92
Bme1390I CCNGG 2 cut(s) 332, 333
Bme18I GGWCC 1 cut(s) 118
BmeT110I CYCGRG 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 2 cut(s) 332, 333
Bpu14I TTCGAA 1 cut(s) 339
BpuEI CTTGAG 1 cut(s) 453
BpuMI CCSGG 2 cut(s) 332, 333
BsaJI CCNNGG 3 cut(s) 330, 331, 360
BsaWI WCCGGW 1 cut(s) 421
Bse118I RCCGGY 1 cut(s) 421
Bse1I ACTGG 1 cut(s) 385
Bse21I CCTNAGG 1 cut(s) 123
BseDI CCNNGG 3 cut(s) 330, 331, 360
BseGI GGATG 2 cut(s) 33, 370
BseNI ACTGG 1 cut(s) 385
BseSI GKGCMC 1 cut(s) 226
BseYI CCCAGC 1 cut(s) 225
BshTI ACCGGT 1 cut(s) 421
BsiHKAI GWGCWC 1 cut(s) 194
BsiHKCI CYCGRG 1 cut(s) 331
BsiSI CCGG 2 cut(s) 332, 422
BslFI GGGAC 1 cut(s) 518
BsmAI GTCTC 1 cut(s) 441
BsmFI GGGAC 1 cut(s) 518
BsoBI CYCGRG 1 cut(s) 331
Bsp119I TTCGAA 1 cut(s) 339
Bsp1286I GDGCHC 2 cut(s) 194, 226
Bsp143I GATC 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 120
BspT104I TTCGAA 1 cut(s) 339
BsrFI RCCGGY 1 cut(s) 421
BsrI ACTGG 1 cut(s) 385
BssAI RCCGGY 1 cut(s) 421
BssECI CCNNGG 3 cut(s) 330, 331, 360
BssMI GATC 1 cut(s) 298
BssSI CACGAG 1 cut(s) 480
BssT1I CCWWGG 1 cut(s) 360
Bst2BI CACGAG 1 cut(s) 480
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 1 cut(s) 276
BstBI TTCGAA 1 cut(s) 339
BstDEI CTNAG 2 cut(s) 123, 432
BstF5I GGATG 2 cut(s) 33, 370
BstKTI GATC 1 cut(s) 301
BstMAI GTCTC 1 cut(s) 441
BstMBI GATC 1 cut(s) 298
BstMWI GCNNNNNNNGC 3 cut(s) 38, 356, 470
BstNSI RCATGY 1 cut(s) 347
BstSCI CCNGG 2 cut(s) 330, 331
BstSLI GKGCMC 1 cut(s) 226
Bsu36I CCTNAGG 1 cut(s) 123
BtsCI GGATG 2 cut(s) 33, 370
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 2 cut(s) 66, 166
Cfr10I RCCGGY 1 cut(s) 421
Cfr13I GGNCC 1 cut(s) 118
Cfr9I CCCGGG 1 cut(s) 331
Csp6I GTAC 1 cut(s) 526
CspAI ACCGGT 1 cut(s) 421
CviAII CATG 3 cut(s) 269, 323, 344
CviJI RGCY 6 cut(s) 192, 212, 229, 359, 464, 473
CviKI_1 RGCY 6 cut(s) 192, 212, 229, 359, 464, 473
CviQI GTAC 1 cut(s) 526
DdeI CTNAG 2 cut(s) 123, 432
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
DraIII CACNNNGTG 1 cut(s) 254
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Ecl136II GAGCTC 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 360
Eco24I GRGCYC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 118
Eco53kI GAGCTC 1 cut(s) 192
Eco57I CTGAAG 1 cut(s) 75
Eco81I CCTNAGG 1 cut(s) 123
Eco88I CYCGRG 1 cut(s) 331
EcoICRI GAGCTC 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 360
EcoT38I GRGCYC 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 3 cut(s) 272, 326, 347
FaiI YATR 8 cut(s) 132, 200, 216, 252, 270, 275, 324, 345
FaqI GGGAC 1 cut(s) 518
FatI CATG 3 cut(s) 268, 322, 343
FokI GGATG 2 cut(s) 20, 377
FriOI GRGCYC 1 cut(s) 194
FspBI CTAG 1 cut(s) 92
GsaI CCCAGC 1 cut(s) 229
HapII CCGG 2 cut(s) 332, 422
Hin1II CATG 3 cut(s) 272, 326, 347
HincII GTYRAC 2 cut(s) 67, 157
HindII GTYRAC 2 cut(s) 67, 157
HinfI GANTC 2 cut(s) 4, 336
HpaII CCGG 2 cut(s) 332, 422
Hpy166II GTNNAC 2 cut(s) 67, 157
Hpy188III TCNNGA 1 cut(s) 482
Hpy8I GTNNAC 2 cut(s) 67, 157
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4V TGCA 2 cut(s) 41, 350
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 356, 470
HpyF3I CTNAG 2 cut(s) 123, 432
Hsp92II CATG 3 cut(s) 272, 326, 347
Kzo9I GATC 1 cut(s) 298
LmnI GCTCC 2 cut(s) 197, 331
LpnPI CCDG 5 cut(s) 239, 287, 345, 366, 435
MaeI CTAG 1 cut(s) 92
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MboII GAAGA 5 cut(s) 194, 237, 293, 410, 457
MhlI GDGCHC 2 cut(s) 194, 226
MluCI AATT 2 cut(s) 83, 375
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 4 cut(s) 18, 109, 277, 495
MroXI GAANNNNTTC 1 cut(s) 413
MseI TTAA 2 cut(s) 374, 393
MspI CCGG 2 cut(s) 332, 422
MspR9I CCNGG 2 cut(s) 332, 333
MwoI GCNNNNNNNGC 3 cut(s) 38, 356, 470
NciI CCSGG 2 cut(s) 332, 333
NdeII GATC 1 cut(s) 298
NlaIII CATG 3 cut(s) 272, 326, 347
NlaIV GGNNCC 1 cut(s) 120
NspI RCATGY 1 cut(s) 347
NspV TTCGAA 1 cut(s) 339
PciI ACATGT 1 cut(s) 343
PdmI GAANNNNTTC 1 cut(s) 413
PfeI GAWTC 1 cut(s) 336
PinAI ACCGGT 1 cut(s) 421
PpuMI RGGWCCY 1 cut(s) 118
PscI ACATGT 1 cut(s) 343
PshBI ATTAAT 1 cut(s) 374
Psp124BI GAGCTC 1 cut(s) 194
Psp5II RGGWCCY 1 cut(s) 118
PspFI CCCAGC 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 118
PspPPI RGGWCCY 1 cut(s) 118
RsaI GTAC 1 cut(s) 527
RsaNI GTAC 1 cut(s) 526
SacI GAGCTC 1 cut(s) 194
SaqAI TTAA 2 cut(s) 374, 393
Sau3AI GATC 1 cut(s) 298
Sau96I GGNCC 1 cut(s) 118
ScrFI CCNGG 2 cut(s) 332, 333
SduI GDGCHC 2 cut(s) 194, 226
SetI ASST 4 cut(s) 129, 194, 466, 475
SfuI TTCGAA 1 cut(s) 339
SinI GGWCC 1 cut(s) 118
SmaI CCCGGG 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 468
SmoI CTYRAG 1 cut(s) 468
Sse9I AATT 2 cut(s) 83, 375
SspMI CTAG 1 cut(s) 92
SstI GAGCTC 1 cut(s) 194
StyD4I CCNGG 2 cut(s) 330, 331
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 1 cut(s) 161
TaqI TCGA 1 cut(s) 339
TasI AATT 2 cut(s) 83, 375
TatI WGTACW 1 cut(s) 525
TfiI GAWTC 1 cut(s) 336
Tru1I TTAA 2 cut(s) 374, 393
Tru9I TTAA 2 cut(s) 374, 393
TscAI CASTG 2 cut(s) 66, 166
TspDTI ATGAA 7 cut(s) 96, 119, 183, 195, 215, 360, 411
TspMI CCCGGG 1 cut(s) 331
TspRI CASTG 2 cut(s) 66, 166
VpaK11BI GGWCC 1 cut(s) 118
VspI ATTAAT 1 cut(s) 374
XapI RAATTY 1 cut(s) 83
XceI RCATGY 1 cut(s) 347
XmaI CCCGGG 1 cut(s) 331
XmnI GAANNNNTTC 1 cut(s) 413
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.