FvH4_5g00371

NADH dehydrogenase (ubiquinone) complex I, assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015411
Physical Location & Seq
Reverse (-)
267236 .. 269981
2746 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g00371.t1

Sequence Viewer

Length: 912 bp
ATGAATAATGCTTCAGCATCCAGTAGTTTAAGGGCAGCTTTCTCACACTGTGTACAGCAAGTCCGAAATTATGATTACCATCATTACCTTTGCCTCCTTGAACTCCCCCATAACATGCGGAAGGCTGCGTTTGCAGTCCGGGCGTTGAATGTCGAAACAGCTCGTGCAATGGATGTTGCTTCTGATCCCAGGATTGGTCTTATGCGTCTTGTCTGGTGGCAAGAAGCCATAGACAAAATCTATGCCAACAAGTCAATTGAGCACCCAACAGCACAAGCTCTATTGTCAGTCGTACATGAGAACAAAATCAGCAAGGGATGGTTGAAACGGTCTGTCGAAGCTCGCATCAATGATGCAAGGAAGGAGATTGGTGATGCCCCAGAAAAAATTGAAGACTTGGAAAAATATGCTGAAGACACCATGTCCACTAATCTTTACATGACACTACAAGCTGGTGGTATCAGGTCGACCGCAGCCGATCATGCAGCATCACATATTGGTAAAGCGAGTGGGCTTCTTCTGCTAATTAAATCACTGCCATACCATGCTAACCGCAACAGGCACTTCTCTTATATACCAACTGAAGTGGCAGCCAAGCATGGTTTGTTGGTAAAACATGGTGATCAAGCAGAGATCCATTTGGACTCTCGTGAGGGCTTACGTGAAGCAGTTTTTGAGATGGCATCAGTGGCTAATGACCATTTGCAGAAGGCTCGTGAATTAGCCAGTACGGTACCTGCAGAGGCTCGTCCGGTGCTGTTGCCAGCAGTCCCTGCCCAAGTTCTACTAGACTCCCTGAGGCGGGTGAATTTTGATGTGTTCGACCCAAGGTTAGCACGAGGGATCCTAGGTATGGCCCCTTTGTTGTATCAGTTGAAACTAAAGTGGCATTCATGGAGAGGAAAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
SQS_PSY

Protein Analysis

304

Amino Acids

34.01

Weight (kDa)

9.21

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQS_PSY PF00494 21 - 278 2.2e-54 Squalene/phytoene synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015411)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62730 AT1G62730
fragaria_vesca FvH4_5g00371
malus_domestica MD04G1082000.v1.1
prunus_persica Prupe.5G076400_v2.0.a1
pyrus_communis pycom04g07390
rosa_chinensis RchiOBHm_Chr7g0202141
rosa_laevigata RLG00000003622
rosa_multiflora Rmu_co8054622.1_g000001
rosa_roxburghii Rroxscaffold_3G00254810
rosa_rugosa Rorug07G0068400
rosa_samantha Rh7AG195800 Rh7BG197100 Rh7CG206900 Rh7DG202400
rosa_wichuraiana Rw7G017150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 745
Acc65I GGTACC 1 cut(s) 733
AccB1I GGYRCC 1 cut(s) 733
AccI GTMKAC 1 cut(s) 467
AciI CCGC 4 cut(s) 118, 471, 553, 802
AclWI GGATC 4 cut(s) 179, 628, 838, 851
AcsI RAATTY 1 cut(s) 808
AcuI CTGAAG 2 cut(s) 432, 603
AdeI CACNNNGTG 1 cut(s) 50
AfaI GTAC 4 cut(s) 54, 294, 730, 735
AfiI CCNNNNNNNGG 4 cut(s) 194, 801, 802, 853
AgsI TTSAA 5 cut(s) 101, 148, 325, 392, 877
AhdI GACNNNNNGTC 1 cut(s) 421
AjnI CCWGG 1 cut(s) 188
AluBI AGCT 5 cut(s) 38, 161, 278, 341, 452
AluI AGCT 5 cut(s) 38, 161, 278, 341, 452
Alw21I GWGCWC 1 cut(s) 264
AlwI GGATC 4 cut(s) 179, 628, 838, 851
AlwNI CAGNNNCTG 1 cut(s) 773
AoxI GGCC 1 cut(s) 855
ApeKI GCWGC 5 cut(s) 35, 125, 473, 485, 590
ApoI RAATTY 1 cut(s) 808
Asp718I GGTACC 1 cut(s) 733
AspA2I CCTAGG 1 cut(s) 847
AspS9I GGNCC 1 cut(s) 856
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 3 cut(s) 383, 632, 817
AvrII CCTAGG 1 cut(s) 847
AxyI CCTNAGG 1 cut(s) 797
BamHI GGATCC 1 cut(s) 843
BanI GGYRCC 1 cut(s) 733
BauI CACGAG 4 cut(s) 162, 648, 714, 837
BbsI GAAGAC 2 cut(s) 399, 420
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 5 cut(s) 47, 112, 485, 497, 602
BccI CCATC 3 cut(s) 87, 312, 673
BcgI CGANNNNNNTGC 2 cut(s) 695, 729
BciT130I CCWGG 1 cut(s) 190
BclI TGATCA 1 cut(s) 622
BcnI CCSGG 1 cut(s) 140
BfaI CTAG 2 cut(s) 788, 848
BfmI CTRYAG 1 cut(s) 738
BfuAI ACCTGC 1 cut(s) 745
BisI GCNGC 5 cut(s) 36, 126, 474, 486, 591
BlnI CCTAGG 1 cut(s) 847
BlsI GCNGC 5 cut(s) 37, 127, 475, 487, 592
Bme1390I CCNGG 2 cut(s) 140, 190
BmeRI GACNNNNNGTC 1 cut(s) 421
BmgT120I GGNCC 1 cut(s) 856
BmiI GGNNCC 3 cut(s) 735, 845, 858
BmrFI CCNGG 2 cut(s) 140, 190
BmsI GCATC 6 cut(s) 26, 343, 354, 364, 497, 692
BpiI GAAGAC 2 cut(s) 399, 420
BpuMI CCSGG 1 cut(s) 140
BsaAI YACGTR 1 cut(s) 662
BsaBI GATNNNNATC 1 cut(s) 78
BsaJI CCNNGG 3 cut(s) 188, 827, 847
BsaWI WCCGGW 1 cut(s) 751
Bsc4I CCNNNNNNNGG 4 cut(s) 194, 801, 802, 853
Bse1I ACTGG 2 cut(s) 21, 726
Bse21I CCTNAGG 1 cut(s) 797
Bse3DI GCAATG 1 cut(s) 174
Bse8I GATNNNNATC 1 cut(s) 78
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 3 cut(s) 188, 827, 847
BseGI GGATG 3 cut(s) 17, 178, 323
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 4 cut(s) 194, 801, 802, 853
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 788
BseNI ACTGG 2 cut(s) 21, 726
BseXI GCAGC 5 cut(s) 47, 112, 485, 497, 602
Bsh1285I CGRYCG 1 cut(s) 471
BshFI GGCC 1 cut(s) 857
BshNI GGYRCC 1 cut(s) 733
BsiEI CGRYCG 1 cut(s) 471
BsiHKAI GWGCWC 1 cut(s) 264
BsiSI CCGG 2 cut(s) 139, 752
BslFI GGGAC 1 cut(s) 755
BslI CCNNNNNNNGG 4 cut(s) 194, 801, 802, 853
BsmFI GGGAC 1 cut(s) 755
BsmI GAATGC 1 cut(s) 889
BsnI GGCC 1 cut(s) 857
Bsp1286I GDGCHC 1 cut(s) 264
Bsp1407I TGTACA 1 cut(s) 52
Bsp143I GATC 5 cut(s) 184, 478, 622, 633, 843
BspACI CCGC 4 cut(s) 118, 471, 553, 802
BspANI GGCC 1 cut(s) 857
BspCNI CTCAG 1 cut(s) 789
BspLI GGNNCC 3 cut(s) 735, 845, 858
BspMAI CTGCAG 1 cut(s) 742
BspMI ACCTGC 1 cut(s) 745
BspPI GGATC 4 cut(s) 179, 628, 838, 851
BspT107I GGYRCC 1 cut(s) 733
BsrDI GCAATG 1 cut(s) 174
BsrGI TGTACA 1 cut(s) 52
BsrI ACTGG 2 cut(s) 21, 726
BssECI CCNNGG 3 cut(s) 188, 827, 847
BssMI GATC 5 cut(s) 184, 478, 622, 633, 843
BssSI CACGAG 4 cut(s) 162, 648, 714, 837
BssT1I CCWWGG 2 cut(s) 827, 847
Bst2BI CACGAG 4 cut(s) 162, 648, 714, 837
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 3 cut(s) 50, 330, 733
BstAPI GCANNNNNTGC 1 cut(s) 773
BstAUI TGTACA 1 cut(s) 52
BstBAI YACGTR 1 cut(s) 662
BstC8I GCNNGC 2 cut(s) 343, 765
BstDEI CTNAG 1 cut(s) 797
BstF5I GGATG 3 cut(s) 17, 178, 323
BstKTI GATC 5 cut(s) 187, 481, 625, 636, 846
BstMBI GATC 5 cut(s) 184, 478, 622, 633, 843
BstMCI CGRYCG 1 cut(s) 471
BstMWI GCNNNNNNNGC 6 cut(s) 131, 140, 482, 520, 689, 773
BstNI CCWGG 1 cut(s) 190
BstNSI RCATGY 1 cut(s) 118
BstSCI CCNGG 2 cut(s) 138, 188
BstSFI CTRYAG 1 cut(s) 738
BstV1I GCAGC 5 cut(s) 47, 112, 485, 497, 602
BstV2I GAAGAC 2 cut(s) 399, 420
BstX2I RGATCY 2 cut(s) 633, 843
BstYI RGATCY 2 cut(s) 633, 843
Bsu36I CCTNAGG 1 cut(s) 797
BsuRI GGCC 1 cut(s) 857
BtsCI GGATG 3 cut(s) 17, 178, 323
BtsI GCAGTG 1 cut(s) 533
BtsIMutI CAGTG 3 cut(s) 46, 533, 693
BveI ACCTGC 1 cut(s) 745
Cac8I GCNNGC 2 cut(s) 343, 765
CaiI CAGNNNCTG 1 cut(s) 773
Cfr13I GGNCC 1 cut(s) 856
CseI GACGC 1 cut(s) 194
Csp6I GTAC 4 cut(s) 53, 293, 729, 734
CspCI CAANNNNNGTGG 2 cut(s) 567, 602
CviAII CATG 9 cut(s) 115, 296, 421, 439, 482, 545, 599, 617, 894
CviQI GTAC 4 cut(s) 53, 293, 729, 734
DdeI CTNAG 1 cut(s) 797
DpnI GATC 5 cut(s) 186, 480, 624, 635, 845
DpnII GATC 5 cut(s) 184, 478, 622, 633, 843
DraIII CACNNNGTG 1 cut(s) 50
DriI GACNNNNNGTC 1 cut(s) 421
Eam1105I GACNNNNNGTC 1 cut(s) 421
Eco130I CCWWGG 2 cut(s) 827, 847
Eco57I CTGAAG 2 cut(s) 432, 603
Eco81I CCTNAGG 1 cut(s) 797
EcoRII CCWGG 1 cut(s) 188
EcoT14I CCWWGG 2 cut(s) 827, 847
ErhI CCWWGG 2 cut(s) 827, 847
FaeI CATG 9 cut(s) 118, 299, 424, 442, 485, 548, 602, 620, 897
FalI AAGNNNNNCTT 2 cut(s) 22, 54
FaqI GGGAC 1 cut(s) 755
FatI CATG 9 cut(s) 114, 295, 420, 438, 481, 544, 598, 616, 893
FauI CCCGC 1 cut(s) 795
FbaI TGATCA 1 cut(s) 622
FblI GTMKAC 1 cut(s) 467
Fnu4HI GCNGC 5 cut(s) 36, 126, 474, 486, 591
FokI GGATG 3 cut(s) 4, 185, 330
Fsp4HI GCNGC 5 cut(s) 36, 126, 474, 486, 591
FspBI CTAG 2 cut(s) 788, 848
GluI GCNGC 5 cut(s) 36, 126, 474, 486, 591
HaeIII GGCC 1 cut(s) 857
HapII CCGG 2 cut(s) 139, 752
HgaI GACGC 1 cut(s) 194
Hin1II CATG 9 cut(s) 118, 299, 424, 442, 485, 548, 602, 620, 897
HincII GTYRAC 1 cut(s) 468
HindII GTYRAC 1 cut(s) 468
HinfI GANTC 2 cut(s) 644, 791
HpaII CCGG 2 cut(s) 139, 752
HphI GGTGA 3 cut(s) 383, 632, 817
Hpy166II GTNNAC 3 cut(s) 53, 426, 468
Hpy188I TCNGA 2 cut(s) 65, 184
Hpy188III TCNNGA 2 cut(s) 650, 716
Hpy8I GTNNAC 3 cut(s) 53, 426, 468
HpyAV CCTTC 3 cut(s) 115, 355, 703
HpyCH4III ACNGT 3 cut(s) 50, 330, 733
HpyCH4IV ACGT 1 cut(s) 661
HpyCH4V TGCA 6 cut(s) 134, 167, 356, 485, 706, 740
HpyF10VI GCNNNNNNNGC 6 cut(s) 131, 140, 482, 520, 689, 773
HpyF3I CTNAG 1 cut(s) 797
HpySE526I ACGT 1 cut(s) 661
Hsp92II CATG 9 cut(s) 118, 299, 424, 442, 485, 548, 602, 620, 897
KpnI GGTACC 1 cut(s) 737
Ksp22I TGATCA 1 cut(s) 622
Kzo9I GATC 5 cut(s) 184, 478, 622, 633, 843
Lsp1109I GCAGC 5 cut(s) 47, 112, 485, 497, 602
LweI GCATC 6 cut(s) 26, 343, 354, 364, 497, 692
MaeI CTAG 2 cut(s) 788, 848
MaeII ACGT 1 cut(s) 661
MalI GATC 5 cut(s) 186, 480, 624, 635, 845
MboI GATC 5 cut(s) 184, 478, 622, 633, 843
MboII GAAGA 3 cut(s) 404, 425, 509
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 2 cut(s) 633, 843
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 6 cut(s) 67, 255, 387, 525, 719, 808
MlyI GAGTC 2 cut(s) 638, 785
MnlI CCTC 6 cut(s) 104, 646, 736, 792, 833, 893
MseI TTAA 2 cut(s) 29, 528
MspI CCGG 2 cut(s) 139, 752
MspR9I CCNGG 2 cut(s) 140, 190
MunI CAATTG 1 cut(s) 255
Mva1269I GAATGC 1 cut(s) 889
MvaI CCWGG 1 cut(s) 190
MwoI GCNNNNNNNGC 6 cut(s) 131, 140, 482, 520, 689, 773
NciI CCSGG 1 cut(s) 140
NdeII GATC 5 cut(s) 184, 478, 622, 633, 843
NlaIII CATG 9 cut(s) 118, 299, 424, 442, 485, 548, 602, 620, 897
NlaIV GGNNCC 3 cut(s) 735, 845, 858
NspI RCATGY 1 cut(s) 118
PctI GAATGC 1 cut(s) 889
PkrI GCNGC 5 cut(s) 37, 127, 475, 487, 592
PleI GAGTC 2 cut(s) 638, 785
PpsI GAGTC 2 cut(s) 638, 785
Ppu21I YACGTR 1 cut(s) 662
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 3 cut(s) 735, 845, 858
PspPI GGNCC 1 cut(s) 856
PstI CTGCAG 1 cut(s) 742
PstNI CAGNNNCTG 1 cut(s) 773
PsuI RGATCY 2 cut(s) 633, 843
RsaI GTAC 4 cut(s) 54, 294, 730, 735
RsaNI GTAC 4 cut(s) 53, 293, 729, 734
SalI GTCGAC 1 cut(s) 466
SaqAI TTAA 2 cut(s) 29, 528
SatI GCNGC 5 cut(s) 36, 126, 474, 486, 591
Sau3AI GATC 5 cut(s) 184, 478, 622, 633, 843
Sau96I GGNCC 1 cut(s) 856
SchI GAGTC 2 cut(s) 638, 785
ScrFI CCNGG 2 cut(s) 140, 190
SduI GDGCHC 1 cut(s) 264
SfaNI GCATC 6 cut(s) 26, 343, 354, 364, 497, 692
SfcI CTRYAG 1 cut(s) 738
Sse9I AATT 6 cut(s) 67, 255, 387, 525, 719, 808
SsiI CCGC 4 cut(s) 118, 471, 553, 802
SspMI CTAG 2 cut(s) 788, 848
StyD4I CCNGG 2 cut(s) 138, 188
StyI CCWWGG 2 cut(s) 827, 847
TaaI ACNGT 3 cut(s) 50, 330, 733
TaiI ACGT 1 cut(s) 664
TaqI TCGA 4 cut(s) 153, 336, 467, 822
TasI AATT 6 cut(s) 67, 255, 387, 525, 719, 808
TatI WGTACW 1 cut(s) 52
Tru1I TTAA 2 cut(s) 29, 528
Tru9I TTAA 2 cut(s) 29, 528
TscAI CASTG 3 cut(s) 53, 540, 693
TseI GCWGC 5 cut(s) 35, 125, 473, 485, 590
TspDTI ATGAA 2 cut(s) 17, 882
TspRI CASTG 3 cut(s) 53, 540, 693
XapI RAATTY 1 cut(s) 808
XceI RCATGY 1 cut(s) 118
XmaJI CCTAGG 1 cut(s) 847
XmiI GTMKAC 1 cut(s) 467
XspI CTAG 2 cut(s) 788, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.