Prupe.5G076400_v2.0.a1

NADH dehydrogenase (ubiquinone) complex I, assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0015411
Physical Location & Seq
Reverse (-)
9051117 .. 9054511
3395 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G076400.1

Sequence Viewer

Length: 912 bp
ATGAATGGTGCTTCTGCATCTAGTAGCTTAAGGGCAGCTTTCTCATACTGTGTGCAGCAAGTCCGTAGTTATGATTACTATAACTACCTTTGCCTCCTTGAACTCCCCCCTAACATGCGAAAGGTTGCATTTGCAGTCCGTGCCTTAAATGTTGAAACAGCTCGTGCTATGGATGTTGCTTCTGATCCGAGGATTGGTCTTATGCGCCTCGTCTGGTGGCAAGAAGCCATAGACAAAATCTATGCCAACAAGTTAATTGAGCACCCAACAGCACAAGCCCTGTTGTCAGTGGTACATGAGAACAAAATTAGCAAGGTATGGCTGAAACGGTCTGTAGAAGCTCGGATCAGTGATGCAAGAAAGGAGGTTGGTGACACCCCAGAAAAAATTGAAGACTTGGAGAGATATGCGGAAGATACTGTATCAACTCTTCTTTACATGACACTTCAAGCTGGTGGTATCAGGTCCACTGCAGCTGATCATGCAGCATCACATATTGGTAAAGCAAGTGGTCTTCTTTTGCTGATTAAGTCATTGCCATATCATGGTAGTCGAAACCGCCATTTTTCTTATATACCAACCGAAGTGGCAGCCAAGCATGGATTGCTGGTTAAGCATGGAGGTCAATCAGAGATTCATTTGGATTCTCGTGAGGGCTTATGTGAAGCGGTTTTTGAGATGGCATCGGTTGCTAATGTCCATTTGCAGAAGGCTCGTGACTTAGCTGGTACAGTACCTGTAGAGGCTTTCCCAGTGCTGCTGCCAGCCGTGCCTGCCCAGGTTCTACTGGACTCTTTGAGACGAGTGAATTTTGATGTCTTTGATCCAAGGTTAGCGCGAGGGATTCTTGGTATTCCTCCTTTGTGGTATCAGTTGAAATTGAAGTGGCATTCATGGAGGGCAAAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
SQS_PSY

Protein Analysis

304

Amino Acids

33.91

Weight (kDa)

9.12

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015411)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62730 AT1G62730
fragaria_vesca FvH4_5g00371
malus_domestica MD04G1082000.v1.1
prunus_persica Prupe.5G076400_v2.0.a1
pyrus_communis pycom04g07390
rosa_chinensis RchiOBHm_Chr7g0202141
rosa_laevigata RLG00000003622
rosa_multiflora Rmu_co8054622.1_g000001
rosa_roxburghii Rroxscaffold_3G00254810
rosa_rugosa Rorug07G0068400
rosa_samantha Rh7AG195800 Rh7BG197100 Rh7CG206900 Rh7DG202400
rosa_wichuraiana Rw7G017150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 545
AccII CGCG 1 cut(s) 838
AciI CCGC 3 cut(s) 410, 559, 668
AclWI GGATC 3 cut(s) 179, 353, 818
AcsI RAATTY 1 cut(s) 808
AfaI GTAC 3 cut(s) 294, 730, 735
AfiI CCNNNNNNNGG 2 cut(s) 194, 545
AflII CTTAAG 1 cut(s) 28
AgsI TTSAA 6 cut(s) 101, 155, 392, 449, 877, 883
AjnI CCWGG 1 cut(s) 777
AluBI AGCT 7 cut(s) 27, 38, 161, 341, 452, 476, 725
AluI AGCT 7 cut(s) 27, 38, 161, 341, 452, 476, 725
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 1 cut(s) 793
AlwI GGATC 3 cut(s) 179, 353, 818
AlwNI CAGNNNCTG 1 cut(s) 737
ApeKI GCWGC 7 cut(s) 35, 55, 473, 485, 590, 757, 760
ApoI RAATTY 1 cut(s) 808
AspLEI GCGC 2 cut(s) 207, 838
AspS9I GGNCC 1 cut(s) 465
AsuHPI GGTGA 1 cut(s) 383
AvaII GGWCC 1 cut(s) 465
BarI GAAGNNNNNNTAC 2 cut(s) 414, 446
BauI CACGAG 3 cut(s) 162, 648, 714
BbsI GAAGAC 2 cut(s) 399, 506
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 7 cut(s) 47, 67, 485, 497, 602, 744, 747
BccI CCATC 1 cut(s) 673
BceAI ACGGC 1 cut(s) 752
BcgI CGANNNNNNTGC 2 cut(s) 695, 729
BciT130I CCWGG 1 cut(s) 779
BclI TGATCA 1 cut(s) 478
BcoDI GTCTC 1 cut(s) 793
BfaI CTAG 1 cut(s) 21
BfmI CTRYAG 3 cut(s) 333, 471, 738
BfrI CTTAAG 1 cut(s) 28
BisI GCNGC 7 cut(s) 36, 56, 474, 486, 591, 758, 761
BlsI GCNGC 7 cut(s) 37, 57, 475, 487, 592, 759, 762
Bme1390I CCNGG 1 cut(s) 779
Bme18I GGWCC 1 cut(s) 465
BmgT120I GGNCC 1 cut(s) 465
BmrFI CCNGG 1 cut(s) 779
BmrI ACTGGG 1 cut(s) 746
BmsI GCATC 4 cut(s) 26, 343, 497, 692
BmuI ACTGGG 1 cut(s) 746
BpiI GAAGAC 2 cut(s) 399, 506
BsaJI CCNNGG 3 cut(s) 188, 777, 827
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 545
Bse1I ACTGG 2 cut(s) 752, 792
Bse3DI GCAATG 1 cut(s) 533
BseBI CCWGG 1 cut(s) 779
BseDI CCNNGG 3 cut(s) 188, 777, 827
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 2 cut(s) 194, 545
BseMI GCAATG 1 cut(s) 533
BseNI ACTGG 2 cut(s) 752, 792
BseXI GCAGC 7 cut(s) 47, 67, 485, 497, 602, 744, 747
BsgI GTGCAG 1 cut(s) 74
Bsh1236I CGCG 1 cut(s) 838
BsiHKAI GWGCWC 1 cut(s) 264
BslI CCNNNNNNNGG 2 cut(s) 194, 545
BsmAI GTCTC 1 cut(s) 793
BsmBI CGTCTC 1 cut(s) 793
BsmI GAATGC 1 cut(s) 889
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 4 cut(s) 184, 345, 478, 823
BspACI CCGC 3 cut(s) 410, 559, 668
BspFNI CGCG 1 cut(s) 838
BspMAI CTGCAG 1 cut(s) 475
BspPI GGATC 3 cut(s) 179, 353, 818
BspTI CTTAAG 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 533
BsrI ACTGG 2 cut(s) 752, 792
BssECI CCNNGG 3 cut(s) 188, 777, 827
BssMI GATC 4 cut(s) 184, 345, 478, 823
BssSI CACGAG 3 cut(s) 162, 648, 714
BssT1I CCWWGG 1 cut(s) 827
Bst2BI CACGAG 3 cut(s) 162, 648, 714
Bst2UI CCWGG 1 cut(s) 779
Bst4CI ACNGT 4 cut(s) 50, 330, 421, 733
Bst6I CTCTTC 1 cut(s) 435
BstAFI CTTAAG 1 cut(s) 28
BstAPI GCANNNNNTGC 3 cut(s) 140, 604, 689
BstC8I GCNNGC 2 cut(s) 765, 774
BstDEI CTNAG 1 cut(s) 721
BstF5I GGATG 1 cut(s) 178
BstFNI CGCG 1 cut(s) 838
BstHHI GCGC 2 cut(s) 207, 838
BstKTI GATC 4 cut(s) 187, 348, 481, 826
BstMAI GTCTC 1 cut(s) 793
BstMBI GATC 4 cut(s) 184, 345, 478, 823
BstMWI GCNNNNNNNGC 7 cut(s) 140, 482, 604, 613, 689, 769, 773
BstNI CCWGG 1 cut(s) 779
BstNSI RCATGY 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 777
BstSFI CTRYAG 3 cut(s) 333, 471, 738
BstUI CGCG 1 cut(s) 838
BstV1I GCAGC 7 cut(s) 47, 67, 485, 497, 602, 744, 747
BstV2I GAAGAC 2 cut(s) 399, 506
BtsCI GGATG 1 cut(s) 178
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 4 cut(s) 294, 355, 468, 759
Cac8I GCNNGC 2 cut(s) 765, 774
CaiI CAGNNNCTG 1 cut(s) 737
CfoI GCGC 2 cut(s) 207, 838
Cfr13I GGNCC 1 cut(s) 465
Csp6I GTAC 3 cut(s) 293, 729, 734
CspCI CAANNNNNGTGG 2 cut(s) 567, 602
CviAII CATG 8 cut(s) 115, 296, 439, 482, 545, 599, 617, 894
CviQI GTAC 3 cut(s) 293, 729, 734
DdeI CTNAG 1 cut(s) 721
DpnI GATC 4 cut(s) 186, 347, 480, 825
DpnII GATC 4 cut(s) 184, 345, 478, 823
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
Eco130I CCWWGG 1 cut(s) 827
Eco47I GGWCC 1 cut(s) 465
EcoRII CCWGG 1 cut(s) 777
EcoT14I CCWWGG 1 cut(s) 827
ErhI CCWWGG 1 cut(s) 827
Esp3I CGTCTC 1 cut(s) 793
FaeI CATG 8 cut(s) 118, 299, 442, 485, 548, 602, 620, 897
FalI AAGNNNNNCTT 2 cut(s) 22, 54
FatI CATG 8 cut(s) 114, 295, 438, 481, 544, 598, 616, 893
FbaI TGATCA 1 cut(s) 478
Fnu4HI GCNGC 7 cut(s) 36, 56, 474, 486, 591, 758, 761
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 7 cut(s) 36, 56, 474, 486, 591, 758, 761
FspBI CTAG 1 cut(s) 21
GlaI GCGC 2 cut(s) 206, 837
GluI GCNGC 7 cut(s) 36, 56, 474, 486, 591, 758, 761
HhaI GCGC 2 cut(s) 207, 838
Hin1II CATG 8 cut(s) 118, 299, 442, 485, 548, 602, 620, 897
Hin6I GCGC 2 cut(s) 205, 836
HinP1I GCGC 2 cut(s) 205, 836
HinfI GANTC 4 cut(s) 634, 644, 791, 844
HphI GGTGA 1 cut(s) 383
Hpy166II GTNNAC 1 cut(s) 468
Hpy188I TCNGA 4 cut(s) 184, 189, 345, 631
Hpy188III TCNNGA 2 cut(s) 650, 716
Hpy8I GTNNAC 1 cut(s) 468
HpyAV CCTTC 1 cut(s) 703
HpyCH4III ACNGT 4 cut(s) 50, 330, 421, 733
HpyCH4V TGCA 8 cut(s) 17, 55, 128, 134, 356, 473, 485, 706
HpyF10VI GCNNNNNNNGC 7 cut(s) 140, 482, 604, 613, 689, 769, 773
HpyF3I CTNAG 1 cut(s) 721
Hsp92II CATG 8 cut(s) 118, 299, 442, 485, 548, 602, 620, 897
HspAI GCGC 2 cut(s) 205, 836
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 4 cut(s) 184, 345, 478, 823
Lsp1109I GCAGC 7 cut(s) 47, 67, 485, 497, 602, 744, 747
LweI GCATC 4 cut(s) 26, 343, 497, 692
MaeI CTAG 1 cut(s) 21
MaeIII GTNAC 2 cut(s) 371, 716
MalI GATC 4 cut(s) 186, 347, 480, 825
MboI GATC 4 cut(s) 184, 345, 478, 823
MboII GAAGA 4 cut(s) 404, 422, 425, 506
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 5 cut(s) 255, 306, 387, 808, 878
MlyI GAGTC 1 cut(s) 785
MseI TTAA 5 cut(s) 29, 146, 254, 528, 612
MspA1I CMGCKG 1 cut(s) 476
MspCI CTTAAG 1 cut(s) 28
MspR9I CCNGG 1 cut(s) 779
Mva1269I GAATGC 1 cut(s) 889
MvaI CCWGG 1 cut(s) 779
MvnI CGCG 1 cut(s) 838
MwoI GCNNNNNNNGC 7 cut(s) 140, 482, 604, 613, 689, 769, 773
NdeII GATC 4 cut(s) 184, 345, 478, 823
NlaIII CATG 8 cut(s) 118, 299, 442, 485, 548, 602, 620, 897
NmuCI GTSAC 2 cut(s) 371, 716
NspI RCATGY 1 cut(s) 118
PctI GAATGC 1 cut(s) 889
PfeI GAWTC 3 cut(s) 634, 644, 844
PflMI CCANNNNNTGG 1 cut(s) 545
PkrI GCNGC 7 cut(s) 37, 57, 475, 487, 592, 759, 762
PleI GAGTC 1 cut(s) 785
PpsI GAGTC 1 cut(s) 785
Psp6I CCWGG 1 cut(s) 777
PspGI CCWGG 1 cut(s) 777
PspPI GGNCC 1 cut(s) 465
PstI CTGCAG 1 cut(s) 475
PstNI CAGNNNCTG 1 cut(s) 737
PvuII CAGCTG 1 cut(s) 476
RsaI GTAC 3 cut(s) 294, 730, 735
RsaNI GTAC 3 cut(s) 293, 729, 734
SaqAI TTAA 5 cut(s) 29, 146, 254, 528, 612
SatI GCNGC 7 cut(s) 36, 56, 474, 486, 591, 758, 761
Sau3AI GATC 4 cut(s) 184, 345, 478, 823
Sau96I GGNCC 1 cut(s) 465
SchI GAGTC 1 cut(s) 785
ScrFI CCNGG 1 cut(s) 779
SduI GDGCHC 1 cut(s) 264
SfaNI GCATC 4 cut(s) 26, 343, 497, 692
SfcI CTRYAG 3 cut(s) 333, 471, 738
SinI GGWCC 1 cut(s) 465
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
Sse9I AATT 5 cut(s) 255, 306, 387, 808, 878
SsiI CCGC 3 cut(s) 410, 559, 668
SspMI CTAG 1 cut(s) 21
StyD4I CCNGG 1 cut(s) 777
StyI CCWWGG 1 cut(s) 827
TaaI ACNGT 4 cut(s) 50, 330, 421, 733
TaqI TCGA 1 cut(s) 553
TasI AATT 5 cut(s) 255, 306, 387, 808, 878
TfiI GAWTC 3 cut(s) 634, 644, 844
Tru1I TTAA 5 cut(s) 29, 146, 254, 528, 612
Tru9I TTAA 5 cut(s) 29, 146, 254, 528, 612
TscAI CASTG 4 cut(s) 294, 355, 475, 759
TseFI GTSAC 2 cut(s) 371, 716
TseI GCWGC 7 cut(s) 35, 55, 473, 485, 590, 757, 760
Tsp45I GTSAC 2 cut(s) 371, 716
TspDTI ATGAA 3 cut(s) 17, 626, 882
TspGWI ACGGA 2 cut(s) 53, 128
TspRI CASTG 4 cut(s) 294, 355, 475, 759
Van91I CCANNNNNTGG 1 cut(s) 545
Vha464I CTTAAG 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 465
XapI RAATTY 1 cut(s) 808
XceI RCATGY 1 cut(s) 118
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.