MD04G1082000.v1.1

NADH dehydrogenase (ubiquinone) complex I, assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0015411
Physical Location & Seq
Forward (+)
11338034 .. 11340258
2225 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1082000.v1.1.491

Sequence Viewer

Length: 912 bp
ATGAATGGTGCTTCAGCATCTAGTAGCTTAAGAGCAGCTTTCTCATACTGTGTGCAGCAAGTCCGTAGTTATGATTATCATAACTATCTTTGCCTCCTCGAACTCCCGCCTCACATGCGGAAGGTTGCATTTGCAGTCCGTGCCTTAAATGTTGAAACAGCTCGTGCTATGGATGTTGCTTCTGATCCCAGGGTTGGTCTTATGCGCCTTGTCTGGTGGCAAGAAGCCATAGATAAGATCTATGCTAACAAGTTAATTGAGCACCCAACAGCTCAAGCCCTGTTGTCAGTGGTACACGAGTACAAAATTAGCAAGGGATGGCTAAAACGGTCTGTAGAAGCTCGGATCAATGATGCAAGAAAGGAGGTTGGTGACACCCCAGAGAAAATTGAAGACTTGGAGAAATATGCTGAAGATACAGTATCGACTATTCTTTACGTGACACTTCAAGCTGGTGGTGTCAACTCCACTGCAGCTGATCATGCAGCATCGCATATTGGTAAAGCAAATGGGCTTCTTTTGCTGATTAAGTCACTGCCATACCATGGTAGCCGCAACAGACATTTTTCTTACATACCAATCAAAGTGGCAGCCAAGCATGGATTGTTGGTTAAGCATGGAGGTCAATCGGAGATTCATTTGGACTCTCGTGAGGGCTTATGTGAAGCTGTTTTTGAGATGGCATCAGTAGCTAATGTCCATTTGCAGAAGGCTCGTGACTTAGCTGGTACAGTACCTGTAGAGGCTCGCCCGGTGCTGCTGCCGGCGGTGCCTGCCCAGGTTCTTTTGGACTCACTGAGACAAGTGAATTTTGATGTGTTTGATCCAAAGTTGGCAAGAGGGATTCATGGCATTCCTCCTTTGTGGTATCAGTTGAAATTAAAGTGGCATTCGTGGAGGGGAAAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
SQS_PSY

Protein Analysis

304

Amino Acids

33.81

Weight (kDa)

9.19

Isoelectric Point (pI)

37.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQS_PSY PF00494 21 - 276 3.5e-50 Squalene/phytoene synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015411)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62730 AT1G62730
fragaria_vesca FvH4_5g00371
malus_domestica MD04G1082000.v1.1
prunus_persica Prupe.5G076400_v2.0.a1
pyrus_communis pycom04g07390
rosa_chinensis RchiOBHm_Chr7g0202141
rosa_laevigata RLG00000003622
rosa_multiflora Rmu_co8054622.1_g000001
rosa_roxburghii Rroxscaffold_3G00254810
rosa_rugosa Rorug07G0068400
rosa_samantha Rh7AG195800 Rh7BG197100 Rh7CG206900 Rh7DG202400
rosa_wichuraiana Rw7G017150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 769
AccB7I CCANNNNNTGG 1 cut(s) 545
AciI CCGC 4 cut(s) 107, 118, 553, 767
AclWI GGATC 3 cut(s) 179, 353, 818
AcsI RAATTY 1 cut(s) 808
AcuI CTGAAG 1 cut(s) 432
AfaI GTAC 4 cut(s) 294, 302, 730, 735
AfiI CCNNNNNNNGG 2 cut(s) 194, 545
AflII CTTAAG 1 cut(s) 28
AgsI TTSAA 4 cut(s) 155, 392, 449, 877
AjnI CCWGG 2 cut(s) 188, 777
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 1 cut(s) 793
AlwI GGATC 3 cut(s) 179, 353, 818
AlwNI CAGNNNCTG 1 cut(s) 737
ApeKI GCWGC 7 cut(s) 35, 55, 473, 485, 590, 757, 760
ApoI RAATTY 1 cut(s) 808
AspLEI GCGC 1 cut(s) 207
AsuC2I CCSGG 1 cut(s) 752
AsuHPI GGTGA 1 cut(s) 383
BaeI ACNNNNGTAYC 2 cut(s) 284, 317
BanI GGYRCC 1 cut(s) 769
BauI CACGAG 4 cut(s) 162, 296, 648, 714
BbsI GAAGAC 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 7 cut(s) 47, 67, 485, 497, 602, 744, 747
BccI CCATC 2 cut(s) 312, 673
BcgI CGANNNNNNTGC 2 cut(s) 695, 729
BciT130I CCWGG 2 cut(s) 190, 779
BclI TGATCA 1 cut(s) 478
BcnI CCSGG 1 cut(s) 752
BcoDI GTCTC 1 cut(s) 793
BfaI CTAG 1 cut(s) 21
BfmI CTRYAG 3 cut(s) 333, 471, 738
BfrI CTTAAG 1 cut(s) 28
BglII AGATCT 1 cut(s) 237
BisI GCNGC 8 cut(s) 36, 56, 474, 486, 553, 591, 758, 761
BlsI GCNGC 8 cut(s) 37, 57, 475, 487, 554, 592, 759, 762
Bme1390I CCNGG 3 cut(s) 190, 752, 779
BmiI GGNNCC 1 cut(s) 771
BmrFI CCNGG 3 cut(s) 190, 752, 779
BmsI GCATC 4 cut(s) 26, 343, 497, 692
BpiI GAAGAC 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 258
BpuMI CCSGG 1 cut(s) 752
BsaAI YACGTR 1 cut(s) 439
BsaJI CCNNGG 4 cut(s) 188, 189, 544, 777
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 545
Bse118I RCCGGY 1 cut(s) 763
BseBI CCWGG 2 cut(s) 190, 779
BseDI CCNNGG 4 cut(s) 188, 189, 544, 777
BseGI GGATG 2 cut(s) 178, 323
BseLI CCNNNNNNNGG 2 cut(s) 194, 545
BseMII CTCAG 1 cut(s) 788
BseRI GAGGAG 1 cut(s) 86
BseXI GCAGC 7 cut(s) 47, 67, 485, 497, 602, 744, 747
BsgI GTGCAG 1 cut(s) 74
BshNI GGYRCC 1 cut(s) 769
BsiHKAI GWGCWC 1 cut(s) 264
BsiSI CCGG 2 cut(s) 752, 764
BslI CCNNNNNNNGG 2 cut(s) 194, 545
BsmAI GTCTC 1 cut(s) 793
BsmI GAATGC 2 cut(s) 852, 889
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 5 cut(s) 184, 237, 345, 478, 823
Bsp19I CCATGG 1 cut(s) 544
BspACI CCGC 4 cut(s) 107, 118, 553, 767
BspCNI CTCAG 1 cut(s) 789
BspLI GGNNCC 1 cut(s) 771
BspMAI CTGCAG 1 cut(s) 475
BspPI GGATC 3 cut(s) 179, 353, 818
BspT107I GGYRCC 1 cut(s) 769
BspTI CTTAAG 1 cut(s) 28
BsrFI RCCGGY 1 cut(s) 763
BssAI RCCGGY 1 cut(s) 763
BssECI CCNNGG 4 cut(s) 188, 189, 544, 777
BssMI GATC 5 cut(s) 184, 237, 345, 478, 823
BssSI CACGAG 4 cut(s) 162, 296, 648, 714
BssT1I CCWWGG 1 cut(s) 544
Bst2BI CACGAG 4 cut(s) 162, 296, 648, 714
Bst2UI CCWGG 2 cut(s) 190, 779
Bst4CI ACNGT 4 cut(s) 50, 330, 421, 733
BstAFI CTTAAG 1 cut(s) 28
BstAPI GCANNNNNTGC 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 439
BstC8I GCNNGC 3 cut(s) 748, 765, 774
BstDEI CTNAG 2 cut(s) 721, 797
BstDSI CCRYGG 1 cut(s) 544
BstF5I GGATG 2 cut(s) 178, 323
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 5 cut(s) 187, 240, 348, 481, 826
BstMAI GTCTC 1 cut(s) 793
BstMBI GATC 5 cut(s) 184, 237, 345, 478, 823
BstMWI GCNNNNNNNGC 7 cut(s) 115, 140, 482, 520, 689, 769, 773
BstNI CCWGG 2 cut(s) 190, 779
BstNSI RCATGY 1 cut(s) 118
BstSCI CCNGG 3 cut(s) 188, 750, 777
BstSFI CTRYAG 3 cut(s) 333, 471, 738
BstV1I GCAGC 7 cut(s) 47, 67, 485, 497, 602, 744, 747
BstV2I GAAGAC 1 cut(s) 399
BstX2I RGATCY 1 cut(s) 237
BstYI RGATCY 1 cut(s) 237
BtgI CCRYGG 1 cut(s) 544
BtgZI GCGATG 1 cut(s) 474
BtsCI GGATG 2 cut(s) 178, 323
BtsI GCAGTG 2 cut(s) 468, 533
BtsIMutI CAGTG 4 cut(s) 294, 468, 533, 794
Cac8I GCNNGC 3 cut(s) 748, 765, 774
CaiI CAGNNNCTG 1 cut(s) 737
CfoI GCGC 1 cut(s) 207
Cfr10I RCCGGY 1 cut(s) 763
Csp6I GTAC 4 cut(s) 293, 301, 729, 734
CspCI CAANNNNNGTGG 2 cut(s) 567, 602
CviAII CATG 6 cut(s) 115, 482, 545, 599, 617, 848
CviQI GTAC 4 cut(s) 293, 301, 729, 734
DdeI CTNAG 2 cut(s) 721, 797
DpnI GATC 5 cut(s) 186, 239, 347, 480, 825
DpnII GATC 5 cut(s) 184, 237, 345, 478, 823
Eco130I CCWWGG 1 cut(s) 544
Eco57I CTGAAG 1 cut(s) 432
EcoRII CCWGG 2 cut(s) 188, 777
EcoT14I CCWWGG 1 cut(s) 544
ErhI CCWWGG 1 cut(s) 544
FaeI CATG 6 cut(s) 118, 485, 548, 602, 620, 851
FalI AAGNNNNNCTT 2 cut(s) 22, 54
FatI CATG 6 cut(s) 114, 481, 544, 598, 616, 847
FauI CCCGC 1 cut(s) 114
FbaI TGATCA 1 cut(s) 478
Fnu4HI GCNGC 8 cut(s) 36, 56, 474, 486, 553, 591, 758, 761
FokI GGATG 2 cut(s) 185, 330
Fsp4HI GCNGC 8 cut(s) 36, 56, 474, 486, 553, 591, 758, 761
FspBI CTAG 1 cut(s) 21
GlaI GCGC 1 cut(s) 206
GluI GCNGC 8 cut(s) 36, 56, 474, 486, 553, 591, 758, 761
HapII CCGG 2 cut(s) 752, 764
HhaI GCGC 1 cut(s) 207
Hin1II CATG 6 cut(s) 118, 485, 548, 602, 620, 851
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HinfI GANTC 4 cut(s) 634, 644, 791, 844
HpaII CCGG 2 cut(s) 752, 764
HphI GGTGA 1 cut(s) 383
Hpy166II GTNNAC 2 cut(s) 295, 463
Hpy188I TCNGA 3 cut(s) 184, 345, 631
Hpy188III TCNNGA 2 cut(s) 650, 716
Hpy8I GTNNAC 2 cut(s) 295, 463
HpyAV CCTTC 2 cut(s) 115, 703
HpyCH4III ACNGT 4 cut(s) 50, 330, 421, 733
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 7 cut(s) 55, 128, 134, 356, 473, 485, 706
HpyF10VI GCNNNNNNNGC 7 cut(s) 115, 140, 482, 520, 689, 769, 773
HpyF3I CTNAG 2 cut(s) 721, 797
HpySE526I ACGT 1 cut(s) 438
Hsp92II CATG 6 cut(s) 118, 485, 548, 602, 620, 851
HspAI GCGC 1 cut(s) 205
KroI GCCGGC 1 cut(s) 763
KroNI GCCGGC 1 cut(s) 765
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 5 cut(s) 184, 237, 345, 478, 823
Lsp1109I GCAGC 7 cut(s) 47, 67, 485, 497, 602, 744, 747
LweI GCATC 4 cut(s) 26, 343, 497, 692
MaeI CTAG 1 cut(s) 21
MaeII ACGT 1 cut(s) 438
MaeIII GTNAC 4 cut(s) 371, 439, 531, 716
MalI GATC 5 cut(s) 186, 239, 347, 480, 825
MboI GATC 5 cut(s) 184, 237, 345, 478, 823
MboII GAAGA 2 cut(s) 404, 425
MflI RGATCY 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 5 cut(s) 255, 306, 387, 808, 878
MlyI GAGTC 2 cut(s) 638, 785
MroNI GCCGGC 1 cut(s) 763
MseI TTAA 6 cut(s) 29, 146, 254, 528, 612, 881
MspA1I CMGCKG 1 cut(s) 476
MspCI CTTAAG 1 cut(s) 28
MspI CCGG 2 cut(s) 752, 764
MspR9I CCNGG 3 cut(s) 190, 752, 779
Mva1269I GAATGC 2 cut(s) 852, 889
MvaI CCWGG 2 cut(s) 190, 779
MwoI GCNNNNNNNGC 7 cut(s) 115, 140, 482, 520, 689, 769, 773
NaeI GCCGGC 1 cut(s) 765
NciI CCSGG 1 cut(s) 752
NcoI CCATGG 1 cut(s) 544
NdeII GATC 5 cut(s) 184, 237, 345, 478, 823
NgoMIV GCCGGC 1 cut(s) 763
NlaIII CATG 6 cut(s) 118, 485, 548, 602, 620, 851
NlaIV GGNNCC 1 cut(s) 771
NmuCI GTSAC 4 cut(s) 371, 439, 531, 716
NspI RCATGY 1 cut(s) 118
PasI CCCWGGG 1 cut(s) 189
PctI GAATGC 2 cut(s) 852, 889
PdiI GCCGGC 1 cut(s) 765
PfeI GAWTC 2 cut(s) 634, 844
PflMI CCANNNNNTGG 1 cut(s) 545
PkrI GCNGC 8 cut(s) 37, 57, 475, 487, 554, 592, 759, 762
PleI GAGTC 2 cut(s) 638, 785
PpsI GAGTC 2 cut(s) 638, 785
Ppu21I YACGTR 1 cut(s) 439
Psp6I CCWGG 2 cut(s) 188, 777
PspGI CCWGG 2 cut(s) 188, 777
PspN4I GGNNCC 1 cut(s) 771
PstI CTGCAG 1 cut(s) 475
PstNI CAGNNNCTG 1 cut(s) 737
PsuI RGATCY 1 cut(s) 237
PvuII CAGCTG 1 cut(s) 476
RsaI GTAC 4 cut(s) 294, 302, 730, 735
RsaNI GTAC 4 cut(s) 293, 301, 729, 734
SaqAI TTAA 6 cut(s) 29, 146, 254, 528, 612, 881
SatI GCNGC 8 cut(s) 36, 56, 474, 486, 553, 591, 758, 761
Sau3AI GATC 5 cut(s) 184, 237, 345, 478, 823
SchI GAGTC 2 cut(s) 638, 785
ScrFI CCNGG 3 cut(s) 190, 752, 779
SduI GDGCHC 1 cut(s) 264
SfaNI GCATC 4 cut(s) 26, 343, 497, 692
SfcI CTRYAG 3 cut(s) 333, 471, 738
SmlI CTYRAG 2 cut(s) 28, 273
SmoI CTYRAG 2 cut(s) 28, 273
Sse9I AATT 5 cut(s) 255, 306, 387, 808, 878
SsiI CCGC 4 cut(s) 107, 118, 553, 767
SspMI CTAG 1 cut(s) 21
StyD4I CCNGG 3 cut(s) 188, 750, 777
StyI CCWWGG 1 cut(s) 544
TaaI ACNGT 4 cut(s) 50, 330, 421, 733
TaiI ACGT 1 cut(s) 441
TaqI TCGA 2 cut(s) 99, 425
TasI AATT 5 cut(s) 255, 306, 387, 808, 878
TatI WGTACW 1 cut(s) 300
TauI GCSGC 1 cut(s) 555
TfiI GAWTC 2 cut(s) 634, 844
Tru1I TTAA 6 cut(s) 29, 146, 254, 528, 612, 881
Tru9I TTAA 6 cut(s) 29, 146, 254, 528, 612, 881
TscAI CASTG 4 cut(s) 294, 475, 540, 801
TseFI GTSAC 4 cut(s) 371, 439, 531, 716
TseI GCWGC 7 cut(s) 35, 55, 473, 485, 590, 757, 760
Tsp45I GTSAC 4 cut(s) 371, 439, 531, 716
TspDTI ATGAA 3 cut(s) 17, 626, 836
TspGWI ACGGA 2 cut(s) 53, 128
TspRI CASTG 4 cut(s) 294, 475, 540, 801
Van91I CCANNNNNTGG 1 cut(s) 545
Vha464I CTTAAG 1 cut(s) 28
XapI RAATTY 1 cut(s) 808
XceI RCATGY 1 cut(s) 118
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.