Rh7CG206900

NADH dehydrogenase (ubiquinone) complex I, assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0015411
Physical Location & Seq
Forward (+)
18485299 .. 18486096
798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG206900.1

Sequence Viewer

Length: 798 bp
ATGCGGAAGGCTGCATTTGCAGTCCGTGCCTTGAATGTTGAAACAGCTCGTGCAATGGATGTTGCTTCTGATCCCAGGATTGGTCTTATGCGTCTTGTCTGGTGGCAAGAAGCCATAGACAAAATCTATGCCAACAAGTCGATTGAGCACCCAACAGCACAAGCCCTCTTGTCAGTCGTCCATGAGAACAAAATTAGCAAGGGATGGTTGAAACGGTCTGTAGAAGCTCGCATCAATGATGCAAGAAAGGAGATTGGTGACGCCCCAGAAAAAATCGAAGACTTGGAAAAATATGCTGAAGACACCATGTCAACTAATCTTTACATGACACTACAAGCTGGTGGTATCAGGTCCACGGCAGCCGATCATGCAGCATCACATATTGGAAAAGCAAGTGGGCTTCTTCTGCTAATTAAGTCACTGCCATACCATGCTAACCGGAACCGCCACTTTTCTTATATCCCAACTGAAGTGGCAGCCAAGCATGGATTGTTGGTAAAACACGGCGGTCAAGCAGAGATCCTTTTAGACTCTCGTGAGGGCTTAAGTGAAGCTGTTTTTGAGATGGCATCAGTGGCTAATGTCCATTTGCAGAAGGCTCGTGATTTAGCCAGTACAGTACCTGCAGAAGCTCATCCAGTGCTGCTGCCAGCAGTGCCTGCCCAAGTTCTACTGGACTCCCTGAGGCGGGTGAATTTTGATGTTTTCGACCCAAGGTTAGCACGAGGGATCCTAGGTACGCCTCCTTTATTGTATCAGTTGAAATTAAAGTGGCACTCTTGGAGAGGAAAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
SQS_PSY

Protein Analysis

265

Amino Acids

29.43

Weight (kDa)

9.42

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQS_PSY PF00494 1 - 240 2.1e-47 Squalene/phytoene synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015411)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62730 AT1G62730
fragaria_vesca FvH4_5g00371
malus_domestica MD04G1082000.v1.1
prunus_persica Prupe.5G076400_v2.0.a1
pyrus_communis pycom04g07390
rosa_chinensis RchiOBHm_Chr7g0202141
rosa_laevigata RLG00000003622
rosa_multiflora Rmu_co8054622.1_g000001
rosa_roxburghii Rroxscaffold_3G00254810
rosa_rugosa Rorug07G0068400
rosa_samantha Rh7AG195800 Rh7BG197100 Rh7CG206900 Rh7DG202400
rosa_wichuraiana Rw7G017150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 631
AciI CCGC 4 cut(s) 4, 445, 507, 688
AclWI GGATC 4 cut(s) 65, 514, 724, 737
AcsI RAATTY 1 cut(s) 694
AcuI CTGAAG 2 cut(s) 318, 489
AcyI GRCGYC 1 cut(s) 261
AfaI GTAC 3 cut(s) 616, 621, 739
AfiI CCNNNNNNNGG 3 cut(s) 80, 687, 688
AflII CTTAAG 1 cut(s) 544
AgsI TTSAA 4 cut(s) 34, 41, 211, 763
AhdI GACNNNNNGTC 1 cut(s) 307
AjnI CCWGG 1 cut(s) 74
AluBI AGCT 5 cut(s) 47, 227, 338, 554, 632
AluI AGCT 5 cut(s) 47, 227, 338, 554, 632
Alw21I GWGCWC 1 cut(s) 150
AlwI GGATC 4 cut(s) 65, 514, 724, 737
AlwNI CAGNNNCTG 2 cut(s) 623, 659
ApeKI GCWGC 6 cut(s) 11, 359, 371, 476, 643, 646
ApoI RAATTY 1 cut(s) 694
AspA2I CCTAGG 1 cut(s) 733
AspS9I GGNCC 1 cut(s) 351
AsuHPI GGTGA 2 cut(s) 269, 703
AvaII GGWCC 1 cut(s) 351
AvrII CCTAGG 1 cut(s) 733
AxyI CCTNAGG 1 cut(s) 683
BamHI GGATCC 1 cut(s) 729
BauI CACGAG 4 cut(s) 48, 534, 600, 723
BbsI GAAGAC 2 cut(s) 285, 306
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 5 cut(s) 371, 383, 488, 630, 633
BccI CCATC 2 cut(s) 198, 559
BceAI ACGGC 2 cut(s) 372, 520
BcgI CGANNNNNNTGC 2 cut(s) 581, 615
BciT130I CCWGG 1 cut(s) 76
BfaI CTAG 1 cut(s) 734
BfmI CTRYAG 2 cut(s) 219, 624
BfrI CTTAAG 1 cut(s) 544
BfuAI ACCTGC 1 cut(s) 631
BisI GCNGC 6 cut(s) 12, 360, 372, 477, 644, 647
BlnI CCTAGG 1 cut(s) 733
BlsI GCNGC 6 cut(s) 13, 361, 373, 478, 645, 648
Bme1390I CCNGG 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 351
BmeRI GACNNNNNGTC 1 cut(s) 307
BmgT120I GGNCC 1 cut(s) 351
BmiI GGNNCC 2 cut(s) 443, 731
BmrFI CCNGG 1 cut(s) 76
BmsI GCATC 4 cut(s) 229, 240, 383, 578
BpiI GAAGAC 2 cut(s) 285, 306
BsaHI GRCGYC 1 cut(s) 261
BsaJI CCNNGG 4 cut(s) 74, 354, 713, 733
BsaWI WCCGGW 1 cut(s) 438
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 687, 688
Bse1I ACTGG 3 cut(s) 612, 638, 678
Bse21I CCTNAGG 1 cut(s) 683
Bse3DI GCAATG 1 cut(s) 60
BseBI CCWGG 1 cut(s) 76
BseDI CCNNGG 4 cut(s) 74, 354, 713, 733
BseGI GGATG 3 cut(s) 64, 209, 634
BseLI CCNNNNNNNGG 3 cut(s) 80, 687, 688
BseMI GCAATG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 674
BseNI ACTGG 3 cut(s) 612, 638, 678
BseXI GCAGC 5 cut(s) 371, 383, 488, 630, 633
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 1 cut(s) 439
BslI CCNNNNNNNGG 3 cut(s) 80, 687, 688
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 4 cut(s) 70, 364, 519, 729
BspACI CCGC 4 cut(s) 4, 445, 507, 688
BspCNI CTCAG 1 cut(s) 675
BspLI GGNNCC 2 cut(s) 443, 731
BspMAI CTGCAG 1 cut(s) 628
BspMI ACCTGC 1 cut(s) 631
BspPI GGATC 4 cut(s) 65, 514, 724, 737
BspTI CTTAAG 1 cut(s) 544
BsrDI GCAATG 1 cut(s) 60
BsrI ACTGG 3 cut(s) 612, 638, 678
BssECI CCNNGG 4 cut(s) 74, 354, 713, 733
BssMI GATC 4 cut(s) 70, 364, 519, 729
BssNI GRCGYC 1 cut(s) 261
BssSI CACGAG 4 cut(s) 48, 534, 600, 723
BssT1I CCWWGG 2 cut(s) 713, 733
Bst2BI CACGAG 4 cut(s) 48, 534, 600, 723
Bst2UI CCWGG 1 cut(s) 76
Bst4CI ACNGT 2 cut(s) 216, 619
BstACI GRCGYC 1 cut(s) 261
BstAFI CTTAAG 1 cut(s) 544
BstAPI GCANNNNNTGC 2 cut(s) 26, 659
BstC8I GCNNGC 3 cut(s) 229, 651, 660
BstDEI CTNAG 1 cut(s) 683
BstDSI CCRYGG 1 cut(s) 354
BstF5I GGATG 3 cut(s) 64, 209, 634
BstKTI GATC 4 cut(s) 73, 367, 522, 732
BstMBI GATC 4 cut(s) 70, 364, 519, 729
BstMWI GCNNNNNNNGC 7 cut(s) 17, 26, 368, 406, 575, 655, 659
BstNI CCWGG 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 74
BstSFI CTRYAG 2 cut(s) 219, 624
BstV1I GCAGC 5 cut(s) 371, 383, 488, 630, 633
BstV2I GAAGAC 2 cut(s) 285, 306
BstX2I RGATCY 2 cut(s) 519, 729
BstYI RGATCY 2 cut(s) 519, 729
Bsu36I CCTNAGG 1 cut(s) 683
BtgI CCRYGG 1 cut(s) 354
BtsCI GGATG 3 cut(s) 64, 209, 634
BtsI GCAGTG 2 cut(s) 419, 660
BtsIMutI CAGTG 4 cut(s) 419, 579, 645, 660
BveI ACCTGC 1 cut(s) 631
Cac8I GCNNGC 3 cut(s) 229, 651, 660
CaiI CAGNNNCTG 2 cut(s) 623, 659
Cfr13I GGNCC 1 cut(s) 351
CseI GACGC 2 cut(s) 80, 269
Csp6I GTAC 3 cut(s) 615, 620, 738
CspCI CAANNNNNGTGG 2 cut(s) 453, 488
CviAII CATG 6 cut(s) 182, 307, 325, 368, 431, 485
CviQI GTAC 3 cut(s) 615, 620, 738
DdeI CTNAG 1 cut(s) 683
DpnI GATC 4 cut(s) 72, 366, 521, 731
DpnII GATC 4 cut(s) 70, 364, 519, 729
DriI GACNNNNNGTC 1 cut(s) 307
Eam1105I GACNNNNNGTC 1 cut(s) 307
Eco130I CCWWGG 2 cut(s) 713, 733
Eco47I GGWCC 1 cut(s) 351
Eco57I CTGAAG 2 cut(s) 318, 489
Eco81I CCTNAGG 1 cut(s) 683
EcoRII CCWGG 1 cut(s) 74
EcoT14I CCWWGG 2 cut(s) 713, 733
ErhI CCWWGG 2 cut(s) 713, 733
FaeI CATG 6 cut(s) 185, 310, 328, 371, 434, 488
FatI CATG 6 cut(s) 181, 306, 324, 367, 430, 484
FauI CCCGC 1 cut(s) 681
Fnu4HI GCNGC 6 cut(s) 12, 360, 372, 477, 644, 647
FokI GGATG 3 cut(s) 71, 216, 621
Fsp4HI GCNGC 6 cut(s) 12, 360, 372, 477, 644, 647
FspBI CTAG 1 cut(s) 734
GluI GCNGC 6 cut(s) 12, 360, 372, 477, 644, 647
HapII CCGG 1 cut(s) 439
HgaI GACGC 2 cut(s) 80, 269
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 6 cut(s) 185, 310, 328, 371, 434, 488
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HinfI GANTC 2 cut(s) 530, 677
HpaII CCGG 1 cut(s) 439
HphI GGTGA 2 cut(s) 269, 703
Hpy166II GTNNAC 2 cut(s) 312, 354
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 2 cut(s) 536, 602
Hpy8I GTNNAC 2 cut(s) 312, 354
HpyAV CCTTC 1 cut(s) 589
HpyCH4III ACNGT 2 cut(s) 216, 619
HpyCH4V TGCA 7 cut(s) 14, 20, 53, 242, 371, 592, 626
HpyF10VI GCNNNNNNNGC 7 cut(s) 17, 26, 368, 406, 575, 655, 659
HpyF3I CTNAG 1 cut(s) 683
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 6 cut(s) 185, 310, 328, 371, 434, 488
Kzo9I GATC 4 cut(s) 70, 364, 519, 729
Lsp1109I GCAGC 5 cut(s) 371, 383, 488, 630, 633
LweI GCATC 4 cut(s) 229, 240, 383, 578
MaeI CTAG 1 cut(s) 734
MaeIII GTNAC 2 cut(s) 257, 417
MalI GATC 4 cut(s) 72, 366, 521, 731
MboI GATC 4 cut(s) 70, 364, 519, 729
MboII GAAGA 3 cut(s) 290, 311, 395
MflI RGATCY 2 cut(s) 519, 729
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 4 cut(s) 192, 411, 694, 764
MlyI GAGTC 2 cut(s) 524, 671
MnlI CCTC 6 cut(s) 176, 532, 678, 719, 753, 779
MseI TTAA 3 cut(s) 414, 545, 767
MspCI CTTAAG 1 cut(s) 544
MspI CCGG 1 cut(s) 439
MspR9I CCNGG 1 cut(s) 76
MvaI CCWGG 1 cut(s) 76
MwoI GCNNNNNNNGC 7 cut(s) 17, 26, 368, 406, 575, 655, 659
NdeII GATC 4 cut(s) 70, 364, 519, 729
NlaIII CATG 6 cut(s) 185, 310, 328, 371, 434, 488
NlaIV GGNNCC 2 cut(s) 443, 731
NmuCI GTSAC 2 cut(s) 257, 417
PkrI GCNGC 6 cut(s) 13, 361, 373, 478, 645, 648
PleI GAGTC 2 cut(s) 524, 671
PpsI GAGTC 2 cut(s) 524, 671
Psp6I CCWGG 1 cut(s) 74
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 2 cut(s) 443, 731
PspPI GGNCC 1 cut(s) 351
PstI CTGCAG 1 cut(s) 628
PstNI CAGNNNCTG 2 cut(s) 623, 659
PsuI RGATCY 2 cut(s) 519, 729
RsaI GTAC 3 cut(s) 616, 621, 739
RsaNI GTAC 3 cut(s) 615, 620, 738
SaqAI TTAA 3 cut(s) 414, 545, 767
SatI GCNGC 6 cut(s) 12, 360, 372, 477, 644, 647
Sau3AI GATC 4 cut(s) 70, 364, 519, 729
Sau96I GGNCC 1 cut(s) 351
SchI GAGTC 2 cut(s) 524, 671
ScrFI CCNGG 1 cut(s) 76
SduI GDGCHC 1 cut(s) 150
SetI ASST 9 cut(s) 49, 229, 340, 353, 556, 625, 634, 719, 739
SfaNI GCATC 4 cut(s) 229, 240, 383, 578
SfcI CTRYAG 2 cut(s) 219, 624
SinI GGWCC 1 cut(s) 351
SmlI CTYRAG 1 cut(s) 544
SmoI CTYRAG 1 cut(s) 544
Sse9I AATT 4 cut(s) 192, 411, 694, 764
SsiI CCGC 4 cut(s) 4, 445, 507, 688
SspMI CTAG 1 cut(s) 734
StyD4I CCNGG 1 cut(s) 74
StyI CCWWGG 2 cut(s) 713, 733
TaaI ACNGT 2 cut(s) 216, 619
TaqI TCGA 3 cut(s) 140, 276, 708
TasI AATT 4 cut(s) 192, 411, 694, 764
TatI WGTACW 1 cut(s) 614
Tru1I TTAA 3 cut(s) 414, 545, 767
Tru9I TTAA 3 cut(s) 414, 545, 767
TscAI CASTG 4 cut(s) 426, 579, 645, 660
TseFI GTSAC 2 cut(s) 257, 417
TseI GCWGC 6 cut(s) 11, 359, 371, 476, 643, 646
Tsp45I GTSAC 2 cut(s) 257, 417
TspGWI ACGGA 1 cut(s) 14
TspRI CASTG 4 cut(s) 426, 579, 645, 660
Vha464I CTTAAG 1 cut(s) 544
VpaK11BI GGWCC 1 cut(s) 351
XapI RAATTY 1 cut(s) 694
XmaJI CCTAGG 1 cut(s) 733
XspI CTAG 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.