AT1G63410

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011668
Physical Location & Seq
Reverse (-)
23510075 .. 23512088
2014 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G63410.3

Sequence Viewer

Length: 576 bp
ATGGCTAGGGTTTTTCCTCAAGCGGCCATCTCTTCACCGTACATGAGTACGGAGAGAGAGACTTTCACGGTTTGGATGAAATCTCTGGTTTACCAAACCAATGGTTTAACTGTTTACAATTCCAACGGAGAGATTACTTACCGTGTCGAAAACTACGACAAATGTAGCAATGAAGTCCATATCATGGATCTCCATGGCAACATTTTGTTCACCATCCGCAAAAAGAAATTATGGCTTTTCGGGAGTTGGTATGTGTATAGAGAATGTGGAAGCTTTACAAGCACGGAAGAAGTGAAACCTTGTGCTAGAATCAAAAGGTCTTCGATAAGAGATGGAGATTGGGAAGTTCGAGATGAGACCAATGAAGTCTTTTGGATTTTAAGATTTGACCCCAAATTTGCTTTTCAGATCATAGACATTCACGGAAATATCATTGCACAGGTTAAGCCAAAGCAATCATCAAATGGGATTACATTGGGAGAAGATGTGTTAACTTTGGAGGTGAAACCACGTGTTGATCACTCACTCGTTGTCACACTTGTCACTGTATATGGATTAATTAAAGGAGTAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

191

Amino Acids

22.02

Weight (kDa)

7.71

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 21 - 149 2.2e-18 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011668)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63410 AT1G63410 AT1G63410
fragaria_vesca FvH4_5g02030 FvH4_5g02030
malus_domestica MD06G1080200.v1.1 MD14G1101600.v1.1
prunus_persica Prupe.5G096800_v2.0.a1
pyrus_communis pycom06g07720
rosa_chinensis RchiOBHm_Chr7g0198311
rosa_laevigata RLG00000003877
rosa_multiflora Rmu_sc0001250.1_g000038
rosa_roxburghii Rroxscaffold_3G00257850
rosa_rugosa Rorug07G0046800
rosa_samantha Rh7AG170300 Rh7BG173400 Rh7CG181000 Rh7DG172500
rosa_wichuraiana Rw7G014910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 184
AciI CCGC 2 cut(s) 23, 217
AclWI GGATC 1 cut(s) 195
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 1 cut(s) 395
AcvI CACGTG 1 cut(s) 512
AfaI GTAC 2 cut(s) 41, 49
AfiI CCNNNNNNNGG 1 cut(s) 184
AflIII ACRYGT 1 cut(s) 511
AluBI AGCT 1 cut(s) 273
AluI AGCT 1 cut(s) 273
Alw26I GTCTC 2 cut(s) 53, 350
AlwI GGATC 1 cut(s) 195
AoxI GGCC 1 cut(s) 24
ApoI RAATTY 1 cut(s) 395
ArsI GACNNNNNNTTYG 2 cut(s) 380, 412
AseI ATTAAT 1 cut(s) 557
AsuHPI GGTGA 3 cut(s) 27, 202, 514
BbrPI CACGTG 1 cut(s) 512
BbsI GAAGAC 1 cut(s) 312
BccI CCATC 3 cut(s) 35, 221, 326
BclI TGATCA 1 cut(s) 517
BcoDI GTCTC 2 cut(s) 53, 350
BfaI CTAG 2 cut(s) 6, 306
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 312
BsaAI YACGTR 1 cut(s) 512
BsaI GGTCTC 1 cut(s) 350
BsaJI CCNNGG 1 cut(s) 193
BsaXI ACNNNNNCTCC 2 cut(s) 471, 501
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse3DI GCAATG 2 cut(s) 175, 432
BseDI CCNNGG 1 cut(s) 193
BseGI GGATG 2 cut(s) 81, 213
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMI GCAATG 2 cut(s) 175, 432
BshFI GGCC 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 2 cut(s) 53, 350
BsnI GGCC 1 cut(s) 26
Bso31I GGTCTC 1 cut(s) 350
Bsp143I GATC 3 cut(s) 187, 408, 517
Bsp19I CCATGG 1 cut(s) 193
BspACI CCGC 2 cut(s) 23, 217
BspANI GGCC 1 cut(s) 26
BspPI GGATC 1 cut(s) 195
BspTNI GGTCTC 1 cut(s) 350
BsrDI GCAATG 2 cut(s) 175, 432
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 3 cut(s) 187, 408, 517
BssT1I CCWWGG 1 cut(s) 193
Bst4CI ACNGT 5 cut(s) 39, 70, 112, 143, 547
Bst6I CTCTTC 1 cut(s) 37
BstBAI YACGTR 1 cut(s) 512
BstDSI CCRYGG 1 cut(s) 193
BstF5I GGATG 2 cut(s) 81, 213
BstKTI GATC 3 cut(s) 190, 411, 520
BstMAI GTCTC 2 cut(s) 53, 350
BstMBI GATC 3 cut(s) 187, 408, 517
BstMWI GCNNNNNNNGC 1 cut(s) 279
BstV2I GAAGAC 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 187
BstXI CCANNNNNNTGG 1 cut(s) 101
BstYI RGATCY 1 cut(s) 187
BsuRI GGCC 1 cut(s) 26
BtgI CCRYGG 1 cut(s) 193
BtsCI GGATG 2 cut(s) 81, 213
BtsIMutI CAGTG 1 cut(s) 543
Csp6I GTAC 2 cut(s) 40, 48
CviAII CATG 3 cut(s) 43, 184, 194
CviJI RGCY 5 cut(s) 5, 26, 235, 273, 448
CviKI_1 RGCY 5 cut(s) 5, 26, 235, 273, 448
CviQI GTAC 2 cut(s) 40, 48
DpnI GATC 3 cut(s) 189, 410, 519
DpnII GATC 3 cut(s) 187, 408, 517
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 193
Eco31I GGTCTC 1 cut(s) 350
Eco72I CACGTG 1 cut(s) 512
EcoT14I CCWWGG 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 193
FaeI CATG 3 cut(s) 46, 187, 197
FatI CATG 3 cut(s) 42, 183, 193
FbaI TGATCA 1 cut(s) 517
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 2 cut(s) 88, 200
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 2 cut(s) 6, 306
GluI GCNGC 1 cut(s) 24
HaeIII GGCC 1 cut(s) 26
Hin1II CATG 3 cut(s) 46, 187, 197
HincII GTYRAC 1 cut(s) 492
HindII GTYRAC 1 cut(s) 492
HindIII AAGCTT 1 cut(s) 271
HinfI GANTC 1 cut(s) 309
HpaI GTTAAC 1 cut(s) 492
HphI GGTGA 3 cut(s) 27, 202, 514
Hpy166II GTNNAC 4 cut(s) 91, 115, 210, 492
Hpy188I TCNGA 1 cut(s) 408
Hpy188III TCNNGA 2 cut(s) 241, 350
Hpy8I GTNNAC 4 cut(s) 91, 115, 210, 492
HpyCH4III ACNGT 5 cut(s) 39, 70, 112, 143, 547
HpyCH4IV ACGT 1 cut(s) 511
HpyCH4V TGCA 1 cut(s) 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 279
HpySE526I ACGT 1 cut(s) 511
Hsp92II CATG 3 cut(s) 46, 187, 197
Ksp22I TGATCA 1 cut(s) 517
KspAI GTTAAC 1 cut(s) 492
Kzo9I GATC 3 cut(s) 187, 408, 517
LpnPI CCDG 2 cut(s) 71, 425
MaeI CTAG 2 cut(s) 6, 306
MaeII ACGT 1 cut(s) 511
MaeIII GTNAC 2 cut(s) 532, 541
MalI GATC 3 cut(s) 189, 410, 519
MboI GATC 3 cut(s) 187, 408, 517
MboII GAAGA 4 cut(s) 24, 299, 312, 494
MflI RGATCY 1 cut(s) 187
MluCI AATT 4 cut(s) 118, 227, 395, 558
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 2 cut(s) 27, 493
MseI TTAA 6 cut(s) 107, 380, 444, 491, 557, 561
MwoI GCNNNNNNNGC 1 cut(s) 279
NcoI CCATGG 1 cut(s) 193
NdeII GATC 3 cut(s) 187, 408, 517
NlaIII CATG 3 cut(s) 46, 187, 197
NmuCI GTSAC 2 cut(s) 532, 541
PacI TTAATTAA 1 cut(s) 561
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PfeI GAWTC 1 cut(s) 309
PflMI CCANNNNNTGG 1 cut(s) 184
PkrI GCNGC 1 cut(s) 25
PmaCI CACGTG 1 cut(s) 512
PmlI CACGTG 1 cut(s) 512
Ppu21I YACGTR 1 cut(s) 512
PshBI ATTAAT 1 cut(s) 557
PspCI CACGTG 1 cut(s) 512
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 2 cut(s) 41, 49
RsaNI GTAC 2 cut(s) 40, 48
SaqAI TTAA 6 cut(s) 107, 380, 444, 491, 557, 561
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 3 cut(s) 187, 408, 517
SetI ASST 6 cut(s) 275, 301, 320, 444, 504, 514
SmlI CTYRAG 1 cut(s) 18
SmoI CTYRAG 1 cut(s) 18
Sse9I AATT 4 cut(s) 118, 227, 395, 558
SsiI CCGC 2 cut(s) 23, 217
SspMI CTAG 2 cut(s) 6, 306
StyI CCWWGG 1 cut(s) 193
TaaI ACNGT 5 cut(s) 39, 70, 112, 143, 547
TaiI ACGT 1 cut(s) 514
TaqI TCGA 3 cut(s) 147, 323, 349
TasI AATT 4 cut(s) 118, 227, 395, 558
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 1 cut(s) 309
Tru1I TTAA 6 cut(s) 107, 380, 444, 491, 557, 561
Tru9I TTAA 6 cut(s) 107, 380, 444, 491, 557, 561
TscAI CASTG 1 cut(s) 550
TseFI GTSAC 2 cut(s) 532, 541
Tsp45I GTSAC 2 cut(s) 532, 541
TspDTI ATGAA 3 cut(s) 92, 186, 378
TspGWI ACGGA 4 cut(s) 65, 141, 299, 438
TspRI CASTG 1 cut(s) 550
Van91I CCANNNNNTGG 1 cut(s) 184
VspI ATTAAT 1 cut(s) 557
XapI RAATTY 1 cut(s) 395
XspI CTAG 2 cut(s) 6, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.