MD06G1080200.v1.1

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0011668
Physical Location & Seq
Forward (+)
19616848 .. 19617825
978 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1080200.v1.1.491

Sequence Viewer

Length: 606 bp
ATGGCTCAGGTGTGTCCTCAAGCTCCCCAAGTTCTCTCTATCTGTCCCTACACTAATAGTTCATCAAAGAGAGAACCTTATACCATTTGGATGAAATCACTTGTATGCCATACAAATGGTTGCACGGTCTACAATTCCAACGGCAACATTGTTTATCGAGTTGACAACTACGACAAAAAGTGTAGCAATGAAGTTCATCTCATGGATCTCCAAGGCAAAGTTCTCTATACCATACTTAAAAAGAAGTTACAAGCTTTTGAACGATGGGATGGCTATAGAACGAGTAGCTCTTCCAAGGAAAGCAAGGAGAAGCCTTGGTTTCAAGTGAAAAGTTATAGTAGAATGCTAATGGGAAGCATAGCTTGTCAAATTACAGTGGAGTGTGACAAGTATTGGATAATGAAATTGGCAGGGAAGAGTGGTGCTGTGGGATTTAGAATAGTAGACATTGATGGAGATATTGTTGCAGAGGCAAAGCAGAAGCTATCATCTTCTGGAGTAGTTCTGGGGGATGATGTCTTAACTTTAGAGGTGGTTCCTCATATGGACCATTCCCTTATAATGGCTATTGTGATTGTGTACGGATTGATTTGTCGCAAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

202

Amino Acids

22.64

Weight (kDa)

8.83

Isoelectric Point (pI)

31.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 27 - 194 4.1e-34 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011668)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63410 AT1G63410 AT1G63410
fragaria_vesca FvH4_5g02030 FvH4_5g02030
malus_domestica MD06G1080200.v1.1 MD14G1101600.v1.1
prunus_persica Prupe.5G096800_v2.0.a1
pyrus_communis pycom06g07720
rosa_chinensis RchiOBHm_Chr7g0198311
rosa_laevigata RLG00000003877
rosa_multiflora Rmu_sc0001250.1_g000038
rosa_roxburghii Rroxscaffold_3G00257850
rosa_rugosa Rorug07G0046800
rosa_samantha Rh7AG170300 Rh7BG173400 Rh7CG181000 Rh7DG172500
rosa_wichuraiana Rw7G014910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
AccI GTMKAC 2 cut(s) 129, 444
AclWI GGATC 1 cut(s) 213
AfaI GTAC 1 cut(s) 581
AfiI CCNNNNNNNGG 1 cut(s) 562
AgsI TTSAA 2 cut(s) 260, 323
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AluBI AGCT 5 cut(s) 23, 254, 288, 362, 484
AluI AGCT 5 cut(s) 23, 254, 288, 362, 484
AlwI GGATC 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 547
AvaII GGWCC 1 cut(s) 547
BccI CCATC 3 cut(s) 258, 263, 446
BceAI ACGGC 1 cut(s) 157
BfmI CTRYAG 1 cut(s) 274
Bme18I GGWCC 1 cut(s) 547
BmgT120I GGNCC 1 cut(s) 547
BmiI GGNNCC 1 cut(s) 537
BpmI CTGGAG 1 cut(s) 516
Bpu10I CCTNAGC 1 cut(s) 6
BsaJI CCNNGG 3 cut(s) 211, 294, 314
BsaXI ACNNNNNCTCC 2 cut(s) 447, 477
Bsc4I CCNNNNNNNGG 1 cut(s) 562
Bse3DI GCAATG 1 cut(s) 193
BseDI CCNNGG 3 cut(s) 211, 294, 314
BseGI GGATG 3 cut(s) 96, 274, 517
BseLI CCNNNNNNNGG 1 cut(s) 562
BseMI GCAATG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 20
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 562
BsmFI GGGAC 1 cut(s) 30
BsmI GAATGC 1 cut(s) 348
Bsp143I GATC 1 cut(s) 205
BspCNI CTCAG 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 537
BspPI GGATC 1 cut(s) 213
BspQI GCTCTTC 1 cut(s) 295
BsrDI GCAATG 1 cut(s) 193
BssECI CCNNGG 3 cut(s) 211, 294, 314
BssMI GATC 1 cut(s) 205
BssT1I CCWWGG 3 cut(s) 211, 294, 314
Bst4CI ACNGT 2 cut(s) 127, 376
Bst6I CTCTTC 2 cut(s) 295, 410
BstDEI CTNAG 1 cut(s) 6
BstF5I GGATG 3 cut(s) 96, 274, 517
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstSFI CTRYAG 1 cut(s) 274
BstX2I RGATCY 1 cut(s) 205
BstXI CCANNNNNNTGG 1 cut(s) 116
BstYI RGATCY 1 cut(s) 205
BtsCI GGATG 3 cut(s) 96, 274, 517
BtsIMutI CAGTG 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 547
Csp6I GTAC 1 cut(s) 580
CviAII CATG 1 cut(s) 202
CviJI RGCY 9 cut(s) 5, 23, 254, 273, 288, 313, 362, 484, 566
CviKI_1 RGCY 9 cut(s) 5, 23, 254, 273, 288, 313, 362, 484, 566
CviQI GTAC 1 cut(s) 580
DdeI CTNAG 1 cut(s) 6
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eam1104I CTCTTC 2 cut(s) 295, 410
EarI CTCTTC 2 cut(s) 295, 410
Eco130I CCWWGG 3 cut(s) 211, 294, 314
Eco47I GGWCC 1 cut(s) 547
EcoT14I CCWWGG 3 cut(s) 211, 294, 314
ErhI CCWWGG 3 cut(s) 211, 294, 314
FaeI CATG 1 cut(s) 205
FalI AAGNNNNNCTT 2 cut(s) 346, 378
FaqI GGGAC 1 cut(s) 30
FatI CATG 1 cut(s) 201
FauNDI CATATG 1 cut(s) 543
FblI GTMKAC 2 cut(s) 129, 444
FokI GGATG 3 cut(s) 103, 281, 524
GsuI CTGGAG 1 cut(s) 516
Hin1II CATG 1 cut(s) 205
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 252
Hpy166II GTNNAC 4 cut(s) 130, 163, 445, 580
Hpy188III TCNNGA 1 cut(s) 495
Hpy8I GTNNAC 4 cut(s) 130, 163, 445, 580
HpyCH4III ACNGT 2 cut(s) 127, 376
HpyCH4V TGCA 2 cut(s) 123, 467
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 1 cut(s) 205
Kzo9I GATC 1 cut(s) 205
LguI GCTCTTC 1 cut(s) 295
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 3 cut(s) 396, 480, 491
MaeIII GTNAC 2 cut(s) 246, 383
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 3 cut(s) 282, 427, 483
MflI RGATCY 1 cut(s) 205
MluCI AATT 3 cut(s) 133, 369, 404
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 4 cut(s) 27, 463, 523, 549
MseI TTAA 2 cut(s) 237, 521
MslI CAYNNNNRTG 3 cut(s) 89, 103, 114
Mva1269I GAATGC 1 cut(s) 348
NdeI CATATG 1 cut(s) 543
NdeII GATC 1 cut(s) 205
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 1 cut(s) 537
NmuCI GTSAC 1 cut(s) 383
PciSI GCTCTTC 1 cut(s) 295
PctI GAATGC 1 cut(s) 348
PsiI TTATAA 1 cut(s) 560
PspN4I GGNNCC 1 cut(s) 537
PspPI GGNCC 1 cut(s) 547
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 1 cut(s) 581
RsaNI GTAC 1 cut(s) 580
RseI CAYNNNNRTG 3 cut(s) 89, 103, 114
SapI GCTCTTC 1 cut(s) 295
SaqAI TTAA 2 cut(s) 237, 521
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 1 cut(s) 547
SetI ASST 8 cut(s) 12, 25, 79, 256, 290, 364, 486, 534
SfcI CTRYAG 1 cut(s) 274
SinI GGWCC 1 cut(s) 547
SmiMI CAYNNNNRTG 3 cut(s) 89, 103, 114
SmlI CTYRAG 1 cut(s) 18
SmoI CTYRAG 1 cut(s) 18
Sse9I AATT 3 cut(s) 133, 369, 404
StyI CCWWGG 3 cut(s) 211, 294, 314
TaaI ACNGT 2 cut(s) 127, 376
TaqI TCGA 1 cut(s) 157
TasI AATT 3 cut(s) 133, 369, 404
Tru1I TTAA 2 cut(s) 237, 521
Tru9I TTAA 2 cut(s) 237, 521
TscAI CASTG 1 cut(s) 381
TseFI GTSAC 1 cut(s) 383
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 5 cut(s) 51, 107, 185, 204, 416
TspGWI ACGGA 1 cut(s) 597
TspRI CASTG 1 cut(s) 381
VpaK11BI GGWCC 1 cut(s) 547
XmiI GTMKAC 2 cut(s) 129, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.