FvH4_5g02030

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011668
Physical Location & Seq
Reverse (-)
1270014 .. 1271158
1145 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02030.t2

Sequence Viewer

Length: 606 bp
ATGGCAAAGGTATGTCCTGGTGAAGCTCCCCAAGTTCCTTCTGTCACTCCCTACTTGAGCTCATCAAAGAGAGAAACATACACCATTTGGATGAAATCACTTGTATGCAATACAAATGGTTGCACTGTCTATAATTCCAGTGGCCAGATTGTTTATCGAGTTGATAACTATGACAGAAAGTGCAGCAAAGAAGTTCTTCTCATGAATCTCCAAGGAAAGCTTCTGTATACCATTCGAAAAAAGAAGCTGCAAGCGTTTGAACGATGGGATGGCTATAAATGGAGTGGGTCGTGTAAGTTTAACAAGGAAGAGAAGCCTTGGTTTCAAGTGAAAAGATATAGCAGAATGCTTATGGGAAGCTTAGCTTGTCAAATCACAGTAGGGTTTGAAAAGTATTGGATAGTGAGACTGACAGGCAAGACTACTGCAGGGTATAGAATAGTGGACATTGATGGAGGAGTTGTTGCAGAGGCAAAAAAGAAGCTGTCGTCTTCTGGGATAGTTCTGGGGGAAGATGTATTAACTTTGGAGATGGAGACTCGTATGGATCATTCCCTTATAATGGCTATTGTTACTGCCTACGGATCAATTTGTCGCAAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

202

Amino Acids

22.85

Weight (kDa)

9.45

Isoelectric Point (pI)

26.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 26 - 159 3.8e-19 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011668)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63410 AT1G63410 AT1G63410
fragaria_vesca FvH4_5g02030 FvH4_5g02030
malus_domestica MD06G1080200.v1.1 MD14G1101600.v1.1
prunus_persica Prupe.5G096800_v2.0.a1
pyrus_communis pycom06g07720
rosa_chinensis RchiOBHm_Chr7g0198311
rosa_laevigata RLG00000003877
rosa_multiflora Rmu_sc0001250.1_g000038
rosa_roxburghii Rroxscaffold_3G00257850
rosa_rugosa Rorug07G0046800
rosa_samantha Rh7AG170300 Rh7BG173400 Rh7CG181000 Rh7DG172500
rosa_wichuraiana Rw7G014910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
AccI GTMKAC 1 cut(s) 227
AclWI GGATC 2 cut(s) 555, 592
AcoI YGGCCR 1 cut(s) 142
AfiI CCNNNNNNNGG 1 cut(s) 562
AgsI TTSAA 3 cut(s) 260, 326, 389
AjnI CCWGG 1 cut(s) 16
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AluBI AGCT 7 cut(s) 26, 60, 220, 247, 360, 365, 484
AluI AGCT 7 cut(s) 26, 60, 220, 247, 360, 365, 484
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 2 cut(s) 400, 530
AlwI GGATC 2 cut(s) 555, 592
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 2 cut(s) 183, 247
Asp700I GAANNNNTTC 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 32
AsuII TTCGAA 1 cut(s) 235
BalI TGGCCA 1 cut(s) 144
BanII GRGCYC 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 483
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 2 cut(s) 195, 234
BccI CCATC 4 cut(s) 258, 263, 446, 526
BciT130I CCWGG 1 cut(s) 18
BcoDI GTCTC 2 cut(s) 400, 530
BfmI CTRYAG 1 cut(s) 426
BisI GCNGC 2 cut(s) 184, 248
BlpI GCTNAGC 1 cut(s) 361
BlsI GCNGC 2 cut(s) 185, 249
Bme1390I CCNGG 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 18
BpiI GAAGAC 1 cut(s) 483
Bpu1102I GCTNAGC 1 cut(s) 361
Bpu14I TTCGAA 1 cut(s) 235
BpuEI CTTGAG 1 cut(s) 76
BsaJI CCNNGG 2 cut(s) 211, 317
BsaXI ACNNNNNCTCC 2 cut(s) 447, 477
Bsc4I CCNNNNNNNGG 1 cut(s) 562
Bse1I ACTGG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 18
BseDI CCNNGG 2 cut(s) 211, 317
BseGI GGATG 2 cut(s) 96, 274
BseLI CCNNNNNNNGG 1 cut(s) 562
BseNI ACTGG 1 cut(s) 138
BseRI GAGGAG 1 cut(s) 471
BseXI GCAGC 2 cut(s) 195, 234
BsgI GTGCAG 1 cut(s) 202
BshFI GGCC 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 562
BsmAI GTCTC 2 cut(s) 400, 530
BsmI GAATGC 1 cut(s) 351
BsnI GGCC 1 cut(s) 144
Bsp119I TTCGAA 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 2 cut(s) 547, 584
Bsp1720I GCTNAGC 1 cut(s) 361
BspANI GGCC 1 cut(s) 144
BspHI TCATGA 1 cut(s) 201
BspMAI CTGCAG 1 cut(s) 430
BspPI GGATC 2 cut(s) 555, 592
BspT104I TTCGAA 1 cut(s) 235
BsrI ACTGG 1 cut(s) 138
BssECI CCNNGG 2 cut(s) 211, 317
BssMI GATC 2 cut(s) 547, 584
BssNAI GTATAC 1 cut(s) 228
BssT1I CCWWGG 2 cut(s) 211, 317
Bst1107I GTATAC 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 2 cut(s) 127, 379
Bst6I CTCTTC 1 cut(s) 303
BstBI TTCGAA 1 cut(s) 235
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 1 cut(s) 361
BstF5I GGATG 2 cut(s) 96, 274
BstKTI GATC 2 cut(s) 550, 587
BstMAI GTCTC 2 cut(s) 400, 530
BstMBI GATC 2 cut(s) 547, 584
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 16
BstSFI CTRYAG 1 cut(s) 426
BstV1I GCAGC 2 cut(s) 195, 234
BstV2I GAAGAC 1 cut(s) 483
BstZ17I GTATAC 1 cut(s) 228
BsuRI GGCC 1 cut(s) 144
BtsCI GGATG 2 cut(s) 96, 274
BtsIMutI CAGTG 2 cut(s) 123, 145
Cac8I GCNNGC 1 cut(s) 252
CciI TCATGA 1 cut(s) 201
CviAII CATG 1 cut(s) 202
DdeI CTNAG 1 cut(s) 361
DpnI GATC 2 cut(s) 549, 586
DpnII GATC 2 cut(s) 547, 584
EaeI YGGCCR 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Ecl136II GAGCTC 1 cut(s) 60
Eco130I CCWWGG 2 cut(s) 211, 317
Eco24I GRGCYC 1 cut(s) 62
Eco53kI GAGCTC 1 cut(s) 60
EcoICRI GAGCTC 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 16
EcoT14I CCWWGG 2 cut(s) 211, 317
EcoT38I GRGCYC 1 cut(s) 62
ErhI CCWWGG 2 cut(s) 211, 317
FaeI CATG 1 cut(s) 205
FalI AAGNNNNNCTT 6 cut(s) 180, 212, 204, 236, 349, 381
FatI CATG 1 cut(s) 201
FblI GTMKAC 1 cut(s) 227
Fnu4HI GCNGC 2 cut(s) 184, 248
FokI GGATG 2 cut(s) 103, 281
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 2 cut(s) 184, 248
GluI GCNGC 2 cut(s) 184, 248
HaeIII GGCC 1 cut(s) 144
Hin1II CATG 1 cut(s) 205
HindIII AAGCTT 2 cut(s) 218, 358
HinfI GANTC 2 cut(s) 205, 538
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 2 cut(s) 228, 445
Hpy188III TCNNGA 1 cut(s) 202
Hpy8I GTNNAC 2 cut(s) 228, 445
HpyAV CCTTC 1 cut(s) 48
HpyCH4III ACNGT 2 cut(s) 127, 379
HpyCH4V TGCA 6 cut(s) 108, 123, 183, 250, 428, 467
HpyF3I CTNAG 1 cut(s) 361
Hsp92II CATG 1 cut(s) 205
Kzo9I GATC 2 cut(s) 547, 584
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 8 cut(s) 3, 30, 151, 158, 399, 414, 480, 491
Lsp1109I GCAGC 2 cut(s) 195, 234
MaeIII GTNAC 2 cut(s) 43, 571
MalI GATC 2 cut(s) 549, 586
MboI GATC 2 cut(s) 547, 584
MboII GAAGA 4 cut(s) 188, 320, 483, 524
MhlI GDGCHC 1 cut(s) 62
MlsI TGGCCA 1 cut(s) 144
MluCI AATT 2 cut(s) 133, 588
MluNI TGGCCA 1 cut(s) 144
MlyI GAGTC 1 cut(s) 532
MnlI CCTC 2 cut(s) 449, 463
Mox20I TGGCCA 1 cut(s) 144
MroXI GAANNNNTTC 1 cut(s) 195
MscI TGGCCA 1 cut(s) 144
MseI TTAA 2 cut(s) 300, 521
MslI CAYNNNNRTG 2 cut(s) 89, 103
Msp20I TGGCCA 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 18
Mva1269I GAATGC 1 cut(s) 351
MvaI CCWGG 1 cut(s) 18
NdeII GATC 2 cut(s) 547, 584
NlaIII CATG 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 43
NspV TTCGAA 1 cut(s) 235
PagI TCATGA 1 cut(s) 201
PctI GAATGC 1 cut(s) 351
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 2 cut(s) 185, 249
PleI GAGTC 1 cut(s) 532
PpsI GAGTC 1 cut(s) 532
PsiI TTATAA 1 cut(s) 560
Psp124BI GAGCTC 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PstI CTGCAG 1 cut(s) 430
RseI CAYNNNNRTG 2 cut(s) 89, 103
SacI GAGCTC 1 cut(s) 62
SaqAI TTAA 2 cut(s) 300, 521
SatI GCNGC 2 cut(s) 184, 248
Sau3AI GATC 2 cut(s) 547, 584
SchI GAGTC 1 cut(s) 532
ScrFI CCNGG 1 cut(s) 18
SduI GDGCHC 1 cut(s) 62
SetI ASST 8 cut(s) 12, 28, 62, 222, 249, 362, 367, 486
SfcI CTRYAG 1 cut(s) 426
SfuI TTCGAA 1 cut(s) 235
SmiMI CAYNNNNRTG 2 cut(s) 89, 103
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
Sse9I AATT 2 cut(s) 133, 588
SstI GAGCTC 1 cut(s) 62
StyD4I CCNGG 1 cut(s) 16
StyI CCWWGG 2 cut(s) 211, 317
TaaI ACNGT 2 cut(s) 127, 379
TaqI TCGA 2 cut(s) 157, 235
TasI AATT 2 cut(s) 133, 588
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 2 cut(s) 300, 521
Tru9I TTAA 2 cut(s) 300, 521
TscAI CASTG 2 cut(s) 130, 145
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 2 cut(s) 183, 247
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 2 cut(s) 107, 218
TspGWI ACGGA 1 cut(s) 597
TspRI CASTG 2 cut(s) 130, 145
XmiI GTMKAC 1 cut(s) 227
XmnI GAANNNNTTC 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.