Rh7BG173400

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0011668
Physical Location & Seq
Forward (+)
13590672 .. 13592060
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG173400.1

Sequence Viewer

Length: 606 bp
ATGGCAAAGGTATGTCGACCTGGTGCAGCTCCCCAAGTTCCTTCTGTCACTCCGTACATGAGCTCAAGGAGAGAAACATATACCATTTGGATGAAATCACTTGTATGCAATACAAATGGTTGCACCGTCTATAATTCCAATGGTGAGATTGTTTATCGAGTTGACAACTATGACAAAAAGTGCAGCAATGAAGTCCATCTCATGAATCTCCAAGGGAAACTTCTTTATACCATACGTAAAAAGAAGCTACAAGCTTTTGAACGATGGGATGGCTATAAATCGAGTGGATCTTGTAAATTTGACAAAGAGGAGAAGCCTTGGTTTCATGTGAAAAGATATAGCAGAATGCTTATGGGAAGCTTAGCTTGTCAAATTACAGTAGGGTTTGAAAAGTATTGGATAGTGAGATTAACAGGCAAGACTACTGCAGGGTTTAGAATAGTGGACATTGATGGAGGAATTGTTGCAGAGGCAAAGAAGAAGCTATCATCTTCTGGGATAGTTCTGGGAGAAGATGTATTAACCTTGGAGGTGGAGACTCATATGGACCATTCACTTATAATGGCTATTGTAACTGCCTATGGATTAATTTGTCGCAAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

201

Amino Acids

22.8

Weight (kDa)

9.34

Isoelectric Point (pI)

31.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 26 - 194 1e-30 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011668)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63410 AT1G63410 AT1G63410
fragaria_vesca FvH4_5g02030 FvH4_5g02030
malus_domestica MD06G1080200.v1.1 MD14G1101600.v1.1
prunus_persica Prupe.5G096800_v2.0.a1
pyrus_communis pycom06g07720
rosa_chinensis RchiOBHm_Chr7g0198311
rosa_laevigata RLG00000003877
rosa_multiflora Rmu_sc0001250.1_g000038
rosa_roxburghii Rroxscaffold_3G00257850
rosa_rugosa Rorug07G0046800
rosa_samantha Rh7AG170300 Rh7BG173400 Rh7CG181000 Rh7DG172500
rosa_wichuraiana Rw7G014910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
AccI GTMKAC 1 cut(s) 16
AclWI GGATC 1 cut(s) 295
AcsI RAATTY 1 cut(s) 296
AfaI GTAC 1 cut(s) 56
AgsI TTSAA 2 cut(s) 260, 389
AjnI CCWGG 1 cut(s) 19
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AluBI AGCT 7 cut(s) 29, 63, 247, 254, 360, 365, 484
AluI AGCT 7 cut(s) 29, 63, 247, 254, 360, 365, 484
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 1 cut(s) 530
AlwI GGATC 1 cut(s) 295
ApeKI GCWGC 2 cut(s) 26, 183
ApoI RAATTY 1 cut(s) 296
AseI ATTAAT 1 cut(s) 587
AspS9I GGNCC 1 cut(s) 547
AsuHPI GGTGA 1 cut(s) 155
AvaII GGWCC 1 cut(s) 547
BanII GRGCYC 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 2 cut(s) 38, 195
BccI CCATC 4 cut(s) 204, 258, 263, 446
BciT130I CCWGG 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 530
BfmI CTRYAG 1 cut(s) 426
BisI GCNGC 2 cut(s) 27, 184
BlpI GCTNAGC 1 cut(s) 361
BlsI GCNGC 2 cut(s) 28, 185
Bme1390I CCNGG 1 cut(s) 21
Bme18I GGWCC 1 cut(s) 547
BmgT120I GGNCC 1 cut(s) 547
BmrFI CCNGG 1 cut(s) 21
Bpu1102I GCTNAGC 1 cut(s) 361
BpuEI CTTGAG 1 cut(s) 49
BsaAI YACGTR 1 cut(s) 236
BsaJI CCNNGG 3 cut(s) 211, 317, 525
BsaXI ACNNNNNCTCC 4 cut(s) 447, 477, 501, 531
Bse3DI GCAATG 1 cut(s) 193
BseBI CCWGG 1 cut(s) 21
BseDI CCNNGG 3 cut(s) 211, 317, 525
BseGI GGATG 2 cut(s) 96, 274
BseMI GCAATG 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 323
BseXI GCAGC 2 cut(s) 38, 195
BsgI GTGCAG 2 cut(s) 45, 202
BsiHKAI GWGCWC 1 cut(s) 65
BsmAI GTCTC 1 cut(s) 530
BsmI GAATGC 1 cut(s) 351
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 1 cut(s) 287
Bsp1720I GCTNAGC 1 cut(s) 361
BspHI TCATGA 1 cut(s) 201
BspMAI CTGCAG 1 cut(s) 430
BspPI GGATC 1 cut(s) 295
BsrDI GCAATG 1 cut(s) 193
BssECI CCNNGG 3 cut(s) 211, 317, 525
BssMI GATC 1 cut(s) 287
BssT1I CCWWGG 3 cut(s) 211, 317, 525
Bst2UI CCWGG 1 cut(s) 21
Bst4CI ACNGT 2 cut(s) 127, 379
BstBAI YACGTR 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 361
BstF5I GGATG 2 cut(s) 96, 274
BstKTI GATC 1 cut(s) 290
BstMAI GTCTC 1 cut(s) 530
BstMBI GATC 1 cut(s) 287
BstNI CCWGG 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 19
BstSFI CTRYAG 1 cut(s) 426
BstSNI TACGTA 1 cut(s) 236
BstV1I GCAGC 2 cut(s) 38, 195
BstX2I RGATCY 1 cut(s) 287
BstYI RGATCY 1 cut(s) 287
BtsCI GGATG 2 cut(s) 96, 274
CciI TCATGA 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 547
CsiI ACCWGGT 1 cut(s) 19
Csp6I GTAC 1 cut(s) 55
CviAII CATG 3 cut(s) 58, 202, 326
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 1 cut(s) 361
DpnI GATC 1 cut(s) 289
DpnII GATC 1 cut(s) 287
Ecl136II GAGCTC 1 cut(s) 63
Eco105I TACGTA 1 cut(s) 236
Eco130I CCWWGG 3 cut(s) 211, 317, 525
Eco24I GRGCYC 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 547
Eco53kI GAGCTC 1 cut(s) 63
EcoICRI GAGCTC 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 19
EcoT14I CCWWGG 3 cut(s) 211, 317, 525
EcoT38I GRGCYC 1 cut(s) 65
ErhI CCWWGG 3 cut(s) 211, 317, 525
FaeI CATG 3 cut(s) 61, 205, 329
FalI AAGNNNNNCTT 4 cut(s) 204, 236, 349, 381
FatI CATG 3 cut(s) 57, 201, 325
FauNDI CATATG 1 cut(s) 543
FblI GTMKAC 1 cut(s) 16
Fnu4HI GCNGC 2 cut(s) 27, 184
FokI GGATG 2 cut(s) 103, 281
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 2 cut(s) 27, 184
GluI GCNGC 2 cut(s) 27, 184
Hin1II CATG 3 cut(s) 61, 205, 329
HincII GTYRAC 2 cut(s) 17, 163
HindII GTYRAC 2 cut(s) 17, 163
HindIII AAGCTT 2 cut(s) 252, 358
HinfI GANTC 2 cut(s) 205, 538
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 3 cut(s) 17, 163, 445
Hpy188III TCNNGA 1 cut(s) 202
Hpy8I GTNNAC 3 cut(s) 17, 163, 445
HpyAV CCTTC 1 cut(s) 51
HpyCH4III ACNGT 2 cut(s) 127, 379
HpyCH4IV ACGT 1 cut(s) 235
HpyCH4V TGCA 6 cut(s) 26, 108, 123, 183, 428, 467
HpyF3I CTNAG 1 cut(s) 361
HpySE526I ACGT 1 cut(s) 235
Hsp92II CATG 3 cut(s) 61, 205, 329
Kzo9I GATC 1 cut(s) 287
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 6 cut(s) 6, 33, 399, 414, 480, 491
Lsp1109I GCAGC 2 cut(s) 38, 195
MabI ACCWGGT 1 cut(s) 19
MaeII ACGT 1 cut(s) 235
MaeIII GTNAC 2 cut(s) 46, 571
MalI GATC 1 cut(s) 289
MboI GATC 1 cut(s) 287
MboII GAAGA 3 cut(s) 483, 490, 524
MflI RGATCY 1 cut(s) 287
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 5 cut(s) 133, 296, 372, 459, 588
MlyI GAGTC 1 cut(s) 532
MnlI CCTC 4 cut(s) 301, 449, 463, 523
MseI TTAA 3 cut(s) 410, 521, 587
MslI CAYNNNNRTG 2 cut(s) 89, 103
MspR9I CCNGG 1 cut(s) 21
Mva1269I GAATGC 1 cut(s) 351
MvaI CCWGG 1 cut(s) 21
NdeI CATATG 1 cut(s) 543
NdeII GATC 1 cut(s) 287
NlaIII CATG 3 cut(s) 61, 205, 329
NmuCI GTSAC 1 cut(s) 46
PagI TCATGA 1 cut(s) 201
PctI GAATGC 1 cut(s) 351
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 2 cut(s) 28, 185
PleI GAGTC 1 cut(s) 532
PpsI GAGTC 1 cut(s) 532
Ppu21I YACGTR 1 cut(s) 236
PshBI ATTAAT 1 cut(s) 587
PsiI TTATAA 1 cut(s) 560
Psp124BI GAGCTC 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PspPI GGNCC 1 cut(s) 547
PstI CTGCAG 1 cut(s) 430
PsuI RGATCY 1 cut(s) 287
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
RseI CAYNNNNRTG 2 cut(s) 89, 103
SacI GAGCTC 1 cut(s) 65
SalI GTCGAC 1 cut(s) 15
SaqAI TTAA 3 cut(s) 410, 521, 587
SatI GCNGC 2 cut(s) 27, 184
Sau3AI GATC 1 cut(s) 287
Sau96I GGNCC 1 cut(s) 547
SchI GAGTC 1 cut(s) 532
ScrFI CCNGG 1 cut(s) 21
SduI GDGCHC 1 cut(s) 65
SexAI ACCWGGT 1 cut(s) 19
SfcI CTRYAG 1 cut(s) 426
SinI GGWCC 1 cut(s) 547
SmiMI CAYNNNNRTG 2 cut(s) 89, 103
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
SnaBI TACGTA 1 cut(s) 236
Sse9I AATT 5 cut(s) 133, 296, 372, 459, 588
SstI GAGCTC 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 19
StyI CCWWGG 3 cut(s) 211, 317, 525
TaaI ACNGT 2 cut(s) 127, 379
TaiI ACGT 1 cut(s) 238
TaqI TCGA 3 cut(s) 16, 157, 281
TasI AATT 5 cut(s) 133, 296, 372, 459, 588
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 3 cut(s) 410, 521, 587
Tru9I TTAA 3 cut(s) 410, 521, 587
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 2 cut(s) 26, 183
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 4 cut(s) 107, 204, 218, 314
TspGWI ACGGA 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 547
VspI ATTAAT 1 cut(s) 587
XapI RAATTY 1 cut(s) 296
XmiI GTMKAC 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.