RchiOBHm_Chr7g0198311

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0011668
Physical Location & Seq
Forward (+)
16147742 .. 16148717
976 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17742

Sequence Viewer

Length: 606 bp
ATGGCAAAGGTATGTCGACCTAGTGCAGCTCCCCAAGTTCCTTCTGTCACTCCGTACATGAGCTCAAAGAGAGAAACATATACCATTTGGATGAAGTCACTTGTATGCAATACAAATGGTTGCACCGTCTATAATTCCAATGGTGAGATTGTCTACCGAGTTGACAACTATGACAAAAGGTGCAGCAATGAAGTCCATCTCATGAATCTGCAAGGGAAACTTCTTTACACCATACGTAAAAAGAAGCTACAAGCTTTCGAACGATGGGATGGCTATAAATGGAGTGGATCTTGTAAATTTGAAAAAGAGGAGAAGCCTTGGTTTCATGTGAAAAGATATAGCAGAATGCTTATGGGAAGCTTAGCTTGTCAAATTACAGTAGGGTTTGAAAAGTATTGGATAGTGAGATTAACAGGCAAGACTACTGCAGGGTTTAGAATAGTGGACATTGATGGAGGAATTGCTGCAGAGGCAAAGAAGAAGCTATCATCTTCTGGGATAGTTCTGGGAGAAGATGTATTAACCTTGGAGGTGGAGACTCATATGGACCATTCACTTGTAATGGCTATTGTAACTGCCTATGGATTAATTTGTCGCAAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

201

Amino Acids

22.9

Weight (kDa)

9.34

Isoelectric Point (pI)

31.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 26 - 194 1.9e-29 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011668)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63410 AT1G63410 AT1G63410
fragaria_vesca FvH4_5g02030 FvH4_5g02030
malus_domestica MD06G1080200.v1.1 MD14G1101600.v1.1
prunus_persica Prupe.5G096800_v2.0.a1
pyrus_communis pycom06g07720
rosa_chinensis RchiOBHm_Chr7g0198311
rosa_laevigata RLG00000003877
rosa_multiflora Rmu_sc0001250.1_g000038
rosa_roxburghii Rroxscaffold_3G00257850
rosa_rugosa Rorug07G0046800
rosa_samantha Rh7AG170300 Rh7BG173400 Rh7CG181000 Rh7DG172500
rosa_wichuraiana Rw7G014910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 16, 153
AclWI GGATC 1 cut(s) 295
AcsI RAATTY 1 cut(s) 296
AfaI GTAC 1 cut(s) 56
AgsI TTSAA 2 cut(s) 302, 389
AluBI AGCT 7 cut(s) 29, 63, 247, 254, 360, 365, 484
AluI AGCT 7 cut(s) 29, 63, 247, 254, 360, 365, 484
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 1 cut(s) 530
AlwI GGATC 1 cut(s) 295
ApeKI GCWGC 3 cut(s) 26, 183, 464
ApoI RAATTY 1 cut(s) 296
AseI ATTAAT 1 cut(s) 587
AspS9I GGNCC 1 cut(s) 547
AsuHPI GGTGA 1 cut(s) 155
AsuII TTCGAA 1 cut(s) 258
AvaII GGWCC 1 cut(s) 547
BanII GRGCYC 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 3 cut(s) 38, 195, 451
BccI CCATC 4 cut(s) 204, 258, 263, 446
BcoDI GTCTC 1 cut(s) 530
BfaI CTAG 1 cut(s) 21
BfmI CTRYAG 2 cut(s) 426, 465
BisI GCNGC 3 cut(s) 27, 184, 465
BlpI GCTNAGC 1 cut(s) 361
BlsI GCNGC 3 cut(s) 28, 185, 466
Bme18I GGWCC 1 cut(s) 547
BmgT120I GGNCC 1 cut(s) 547
Bpu1102I GCTNAGC 1 cut(s) 361
Bpu14I TTCGAA 1 cut(s) 258
BsaAI YACGTR 1 cut(s) 236
BsaJI CCNNGG 2 cut(s) 317, 525
BsaXI ACNNNNNCTCC 2 cut(s) 501, 531
Bse3DI GCAATG 1 cut(s) 193
BseDI CCNNGG 2 cut(s) 317, 525
BseGI GGATG 2 cut(s) 96, 274
BseMI GCAATG 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 323
BseXI GCAGC 3 cut(s) 38, 195, 451
BsgI GTGCAG 2 cut(s) 45, 202
BsiHKAI GWGCWC 1 cut(s) 65
BsmAI GTCTC 1 cut(s) 530
BsmI GAATGC 1 cut(s) 351
Bsp119I TTCGAA 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 1 cut(s) 287
Bsp1720I GCTNAGC 1 cut(s) 361
BspHI TCATGA 1 cut(s) 201
BspMAI CTGCAG 2 cut(s) 430, 469
BspPI GGATC 1 cut(s) 295
BspT104I TTCGAA 1 cut(s) 258
BsrDI GCAATG 1 cut(s) 193
BssECI CCNNGG 2 cut(s) 317, 525
BssMI GATC 1 cut(s) 287
BssT1I CCWWGG 2 cut(s) 317, 525
Bst4CI ACNGT 2 cut(s) 127, 379
BstBAI YACGTR 1 cut(s) 236
BstBI TTCGAA 1 cut(s) 258
BstDEI CTNAG 1 cut(s) 361
BstF5I GGATG 2 cut(s) 96, 274
BstKTI GATC 1 cut(s) 290
BstMAI GTCTC 1 cut(s) 530
BstMBI GATC 1 cut(s) 287
BstMWI GCNNNNNNNGC 1 cut(s) 470
BstSFI CTRYAG 2 cut(s) 426, 465
BstSNI TACGTA 1 cut(s) 236
BstV1I GCAGC 3 cut(s) 38, 195, 451
BstX2I RGATCY 1 cut(s) 287
BstYI RGATCY 1 cut(s) 287
BtsCI GGATG 2 cut(s) 96, 274
CciI TCATGA 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 547
Csp6I GTAC 1 cut(s) 55
CviAII CATG 3 cut(s) 58, 202, 326
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 1 cut(s) 361
DpnI GATC 1 cut(s) 289
DpnII GATC 1 cut(s) 287
Ecl136II GAGCTC 1 cut(s) 63
Eco105I TACGTA 1 cut(s) 236
Eco130I CCWWGG 2 cut(s) 317, 525
Eco24I GRGCYC 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 547
Eco53kI GAGCTC 1 cut(s) 63
EcoICRI GAGCTC 1 cut(s) 63
EcoT14I CCWWGG 2 cut(s) 317, 525
EcoT38I GRGCYC 1 cut(s) 65
ErhI CCWWGG 2 cut(s) 317, 525
FaeI CATG 3 cut(s) 61, 205, 329
FalI AAGNNNNNCTT 4 cut(s) 204, 236, 349, 381
FatI CATG 3 cut(s) 57, 201, 325
FauNDI CATATG 1 cut(s) 543
FblI GTMKAC 2 cut(s) 16, 153
Fnu4HI GCNGC 3 cut(s) 27, 184, 465
FokI GGATG 2 cut(s) 103, 281
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 3 cut(s) 27, 184, 465
FspBI CTAG 1 cut(s) 21
GluI GCNGC 3 cut(s) 27, 184, 465
Hin1II CATG 3 cut(s) 61, 205, 329
HincII GTYRAC 2 cut(s) 17, 163
HindII GTYRAC 2 cut(s) 17, 163
HindIII AAGCTT 2 cut(s) 252, 358
HinfI GANTC 2 cut(s) 205, 538
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 4 cut(s) 17, 154, 163, 445
Hpy188III TCNNGA 1 cut(s) 202
Hpy8I GTNNAC 4 cut(s) 17, 154, 163, 445
HpyAV CCTTC 1 cut(s) 51
HpyCH4III ACNGT 2 cut(s) 127, 379
HpyCH4IV ACGT 1 cut(s) 235
HpyCH4V TGCA 7 cut(s) 26, 108, 123, 183, 211, 428, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 470
HpyF3I CTNAG 1 cut(s) 361
HpySE526I ACGT 1 cut(s) 235
Hsp92II CATG 3 cut(s) 61, 205, 329
Kzo9I GATC 1 cut(s) 287
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 4 cut(s) 399, 414, 480, 491
Lsp1109I GCAGC 3 cut(s) 38, 195, 451
MaeI CTAG 1 cut(s) 21
MaeII ACGT 1 cut(s) 235
MaeIII GTNAC 3 cut(s) 46, 96, 571
MalI GATC 1 cut(s) 289
MboI GATC 1 cut(s) 287
MboII GAAGA 3 cut(s) 483, 490, 524
MflI RGATCY 1 cut(s) 287
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 5 cut(s) 133, 296, 372, 459, 588
MlyI GAGTC 1 cut(s) 532
MnlI CCTC 4 cut(s) 301, 449, 463, 523
MseI TTAA 3 cut(s) 410, 521, 587
MslI CAYNNNNRTG 2 cut(s) 89, 103
Mva1269I GAATGC 1 cut(s) 351
MwoI GCNNNNNNNGC 1 cut(s) 470
NdeI CATATG 1 cut(s) 543
NdeII GATC 1 cut(s) 287
NlaIII CATG 3 cut(s) 61, 205, 329
NmuCI GTSAC 2 cut(s) 46, 96
NspV TTCGAA 1 cut(s) 258
PagI TCATGA 1 cut(s) 201
PctI GAATGC 1 cut(s) 351
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 3 cut(s) 28, 185, 466
PleI GAGTC 1 cut(s) 532
PpsI GAGTC 1 cut(s) 532
Ppu21I YACGTR 1 cut(s) 236
PshBI ATTAAT 1 cut(s) 587
Psp124BI GAGCTC 1 cut(s) 65
PspPI GGNCC 1 cut(s) 547
PstI CTGCAG 2 cut(s) 430, 469
PsuI RGATCY 1 cut(s) 287
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
RseI CAYNNNNRTG 2 cut(s) 89, 103
SacI GAGCTC 1 cut(s) 65
SalI GTCGAC 1 cut(s) 15
SaqAI TTAA 3 cut(s) 410, 521, 587
SatI GCNGC 3 cut(s) 27, 184, 465
Sau3AI GATC 1 cut(s) 287
Sau96I GGNCC 1 cut(s) 547
SchI GAGTC 1 cut(s) 532
SduI GDGCHC 1 cut(s) 65
SfcI CTRYAG 2 cut(s) 426, 465
SfuI TTCGAA 1 cut(s) 258
SinI GGWCC 1 cut(s) 547
SmiMI CAYNNNNRTG 2 cut(s) 89, 103
SnaBI TACGTA 1 cut(s) 236
Sse9I AATT 5 cut(s) 133, 296, 372, 459, 588
SspMI CTAG 1 cut(s) 21
SstI GAGCTC 1 cut(s) 65
StyI CCWWGG 2 cut(s) 317, 525
TaaI ACNGT 2 cut(s) 127, 379
TaiI ACGT 1 cut(s) 238
TaqI TCGA 2 cut(s) 16, 258
TasI AATT 5 cut(s) 133, 296, 372, 459, 588
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 3 cut(s) 410, 521, 587
Tru9I TTAA 3 cut(s) 410, 521, 587
TseFI GTSAC 2 cut(s) 46, 96
TseI GCWGC 3 cut(s) 26, 183, 464
Tsp45I GTSAC 2 cut(s) 46, 96
TspDTI ATGAA 4 cut(s) 107, 204, 218, 314
TspGWI ACGGA 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 547
VspI ATTAAT 1 cut(s) 587
XapI RAATTY 1 cut(s) 296
XmiI GTMKAC 2 cut(s) 16, 153
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.