Prupe.5G096800_v2.0.a1

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0011668
Physical Location & Seq
Reverse (-)
10563355 .. 10564425
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G096800.1

Sequence Viewer

Length: 603 bp
ATGGCTAAGGTGTGTCCTCAAGCTTCCCAAGTTCTCTCTATCCCTCCCTACATGAGTGGCTCTTCAAAGAGAGAAACATATACCATTTGGATGAAATCACTTGTGTGCCATACCAATGGTTGCACGATCTATAATTCCAAGGGTGACGTCGTTTATCGAGTGGACAACTACGACAAAAAGTGTAGCAACGAAGTTCATCTCATGGATCTCCAAGGCAAAGTTCTTTATACCATACGTAAAAAGAAGTTACAAGCTTTTGAACGATGGGATGGCTATAGATTGAGCGCCCCTTCTAAAGTGGAGAAGGAGAAGCCTTGGTTTCAAGTGACAAGATATAGTAGAATGTTTATGGGAAGCATAGCTTGTCAAATTACAGTAGATTGTGACAAGTACTGGATAGTGAGATTGGCCGGCAAGAGTACTGTAAGATTTAGAATTGTTGACGTTAATGGAGATATTGTTGCAGAGGCAAAGCAGAAGGTATCATCTTCTGGGGTAGTTCTGGGGAGTGATGTATTAACTCTGGAGGTGGTGCCTCATATGGAGCATGCCCTTATAATGGCTATTATAGCTGTGTATGGATTGCTTTGTCGCAAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

201

Amino Acids

22.72

Weight (kDa)

9.35

Isoelectric Point (pI)

27.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011668)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63410 AT1G63410 AT1G63410
fragaria_vesca FvH4_5g02030 FvH4_5g02030
malus_domestica MD06G1080200.v1.1 MD14G1101600.v1.1
prunus_persica Prupe.5G096800_v2.0.a1
pyrus_communis pycom06g07720
rosa_chinensis RchiOBHm_Chr7g0198311
rosa_laevigata RLG00000003877
rosa_multiflora Rmu_sc0001250.1_g000038
rosa_roxburghii Rroxscaffold_3G00257850
rosa_rugosa Rorug07G0046800
rosa_samantha Rh7AG170300 Rh7BG173400 Rh7CG181000 Rh7DG172500
rosa_wichuraiana Rw7G014910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 557
AatII GACGTC 1 cut(s) 150
AccB1I GGYRCC 1 cut(s) 532
AclWI GGATC 1 cut(s) 213
AcoI YGGCCR 1 cut(s) 408
AcyI GRCGYC 1 cut(s) 147
AfaI GTAC 2 cut(s) 392, 421
AfiI CCNNNNNNNGG 1 cut(s) 559
AgsI TTSAA 3 cut(s) 66, 260, 323
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AleI CACNNNNGTG 1 cut(s) 103
AluBI AGCT 4 cut(s) 23, 254, 362, 572
AluI AGCT 4 cut(s) 23, 254, 362, 572
AlwI GGATC 1 cut(s) 213
AoxI GGCC 1 cut(s) 408
AspLEI GCGC 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 155
BanI GGYRCC 1 cut(s) 532
BccI CCATC 2 cut(s) 258, 263
BfmI CTRYAG 1 cut(s) 274
BfoI RGCGCY 1 cut(s) 288
BmcAI AGTACT 2 cut(s) 392, 421
BmiI GGNNCC 1 cut(s) 534
BpmI CTGGAG 1 cut(s) 545
Bpu10I CCTNAGC 1 cut(s) 6
BsaAI YACGTR 1 cut(s) 236
BsaHI GRCGYC 1 cut(s) 147
BsaJI CCNNGG 3 cut(s) 138, 211, 314
BsaXI ACNNNNNCTCC 2 cut(s) 444, 474
Bsc4I CCNNNNNNNGG 1 cut(s) 559
Bse118I RCCGGY 1 cut(s) 410
Bse1I ACTGG 1 cut(s) 398
BseDI CCNNGG 3 cut(s) 138, 211, 314
BseGI GGATG 2 cut(s) 96, 274
BseLI CCNNNNNNNGG 1 cut(s) 559
BseNI ACTGG 1 cut(s) 398
BshFI GGCC 1 cut(s) 410
BshNI GGYRCC 1 cut(s) 532
BsiSI CCGG 1 cut(s) 411
BslI CCNNNNNNNGG 1 cut(s) 559
BsnI GGCC 1 cut(s) 410
Bsp143I GATC 2 cut(s) 126, 205
BspANI GGCC 1 cut(s) 410
BspLI GGNNCC 1 cut(s) 534
BspPI GGATC 1 cut(s) 213
BspQI GCTCTTC 1 cut(s) 67
BspT107I GGYRCC 1 cut(s) 532
BsrFI RCCGGY 1 cut(s) 410
BsrI ACTGG 1 cut(s) 398
BssAI RCCGGY 1 cut(s) 410
BssECI CCNNGG 3 cut(s) 138, 211, 314
BssMI GATC 2 cut(s) 126, 205
BssNI GRCGYC 1 cut(s) 147
BssT1I CCWWGG 3 cut(s) 138, 211, 314
Bst4CI ACNGT 2 cut(s) 376, 424
Bst6I CTCTTC 1 cut(s) 67
BstACI GRCGYC 1 cut(s) 147
BstBAI YACGTR 1 cut(s) 236
BstC8I GCNNGC 2 cut(s) 412, 549
BstDEI CTNAG 1 cut(s) 6
BstF5I GGATG 2 cut(s) 96, 274
BstH2I RGCGCY 1 cut(s) 288
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 2 cut(s) 129, 208
BstMBI GATC 2 cut(s) 126, 205
BstMWI GCNNNNNNNGC 1 cut(s) 569
BstNSI RCATGY 1 cut(s) 551
BstSFI CTRYAG 1 cut(s) 274
BstSNI TACGTA 1 cut(s) 236
BstX2I RGATCY 1 cut(s) 205
BstXI CCANNNNNNTGG 1 cut(s) 116
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 1 cut(s) 410
BtsCI GGATG 2 cut(s) 96, 274
Cac8I GCNNGC 2 cut(s) 412, 549
CfoI GCGC 1 cut(s) 287
Cfr10I RCCGGY 1 cut(s) 410
Csp6I GTAC 2 cut(s) 391, 420
CviAII CATG 3 cut(s) 52, 202, 548
CviQI GTAC 2 cut(s) 391, 420
DdeI CTNAG 1 cut(s) 6
DpnI GATC 2 cut(s) 128, 207
DpnII GATC 2 cut(s) 126, 205
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 67
Eco105I TACGTA 1 cut(s) 236
Eco130I CCWWGG 3 cut(s) 138, 211, 314
EcoT14I CCWWGG 3 cut(s) 138, 211, 314
ErhI CCWWGG 3 cut(s) 138, 211, 314
FaeI CATG 3 cut(s) 55, 205, 551
FalI AAGNNNNNCTT 2 cut(s) 346, 378
FatI CATG 3 cut(s) 51, 201, 547
FauNDI CATATG 1 cut(s) 540
FokI GGATG 2 cut(s) 103, 281
GlaI GCGC 1 cut(s) 286
GsuI CTGGAG 1 cut(s) 545
HaeII RGCGCY 1 cut(s) 288
HaeIII GGCC 1 cut(s) 410
HapII CCGG 1 cut(s) 411
HhaI GCGC 1 cut(s) 287
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 3 cut(s) 55, 205, 551
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HindIII AAGCTT 2 cut(s) 21, 252
HpaII CCGG 1 cut(s) 411
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 2 cut(s) 163, 442
Hpy188III TCNNGA 1 cut(s) 524
Hpy8I GTNNAC 2 cut(s) 163, 442
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 3 cut(s) 298, 300, 472
HpyCH4III ACNGT 2 cut(s) 376, 424
HpyCH4IV ACGT 3 cut(s) 147, 235, 444
HpyCH4V TGCA 2 cut(s) 123, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 569
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 3 cut(s) 147, 235, 444
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 3 cut(s) 55, 205, 551
HspAI GCGC 1 cut(s) 285
KroI GCCGGC 1 cut(s) 410
KroNI GCCGGC 1 cut(s) 412
Kzo9I GATC 2 cut(s) 126, 205
LguI GCTCTTC 1 cut(s) 67
LmnI GCTCC 1 cut(s) 544
LpnPI CCDG 5 cut(s) 379, 424, 477, 488, 509
MaeII ACGT 3 cut(s) 147, 235, 444
MaeIII GTNAC 4 cut(s) 143, 246, 325, 383
MalI GATC 2 cut(s) 128, 207
MboI GATC 2 cut(s) 126, 205
MboII GAAGA 2 cut(s) 54, 480
MflI RGATCY 1 cut(s) 205
MluCI AATT 3 cut(s) 133, 369, 435
MnlI CCTC 5 cut(s) 27, 54, 460, 520, 546
MroNI GCCGGC 1 cut(s) 410
MseI TTAA 2 cut(s) 447, 518
MslI CAYNNNNRTG 3 cut(s) 89, 103, 114
MspI CCGG 1 cut(s) 411
MwoI GCNNNNNNNGC 1 cut(s) 569
NaeI GCCGGC 1 cut(s) 412
NdeI CATATG 1 cut(s) 540
NdeII GATC 2 cut(s) 126, 205
NgoMIV GCCGGC 1 cut(s) 410
NlaIII CATG 3 cut(s) 55, 205, 551
NlaIV GGNNCC 1 cut(s) 534
NmuCI GTSAC 3 cut(s) 143, 325, 383
NspI RCATGY 1 cut(s) 551
OliI CACNNNNGTG 1 cut(s) 103
PaeI GCATGC 1 cut(s) 551
PciSI GCTCTTC 1 cut(s) 67
PdiI GCCGGC 1 cut(s) 412
Ppu21I YACGTR 1 cut(s) 236
PsiI TTATAA 1 cut(s) 557
PspN4I GGNNCC 1 cut(s) 534
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 2 cut(s) 392, 421
RsaNI GTAC 2 cut(s) 391, 420
RseI CAYNNNNRTG 3 cut(s) 89, 103, 114
SapI GCTCTTC 1 cut(s) 67
SaqAI TTAA 2 cut(s) 447, 518
Sau3AI GATC 2 cut(s) 126, 205
ScaI AGTACT 2 cut(s) 392, 421
SfcI CTRYAG 1 cut(s) 274
SmiMI CAYNNNNRTG 3 cut(s) 89, 103, 114
SmlI CTYRAG 1 cut(s) 18
SmoI CTYRAG 1 cut(s) 18
SnaBI TACGTA 1 cut(s) 236
SphI GCATGC 1 cut(s) 551
Sse9I AATT 3 cut(s) 133, 369, 435
StyI CCWWGG 3 cut(s) 138, 211, 314
TaaI ACNGT 2 cut(s) 376, 424
TaiI ACGT 3 cut(s) 150, 238, 447
TaqI TCGA 1 cut(s) 157
TasI AATT 3 cut(s) 133, 369, 435
TatI WGTACW 2 cut(s) 390, 419
Tru1I TTAA 2 cut(s) 447, 518
Tru9I TTAA 2 cut(s) 447, 518
TseFI GTSAC 3 cut(s) 143, 325, 383
Tsp45I GTSAC 3 cut(s) 143, 325, 383
TspDTI ATGAA 2 cut(s) 107, 185
XceI RCATGY 1 cut(s) 551
ZraI GACGTC 1 cut(s) 148
ZrmI AGTACT 2 cut(s) 392, 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.