Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010672

Physical Location & Seq

Genomic Coordinates Forward (+)

23555399 .. 23558917

Gene Structure 3519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G63500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGGGTTGTGAGGTTTCAAAGTTATGTGCATTTTGTTGTGTTTCTGATCCTGAAGGATCTAATCATGGTGTCACAGGGTTAGATGAAGATAGGAGAGGTGAAGGGAATGATTTGCCTCAGTTTCGTGAATTCTCAATTGAGACGTTGAGGAACGCAACATCAGGATTTGCTACAGAGAATATAGTATCAGAGCATGGTGAAAAAGCTCCAAATGTTGTGTATAAAGGGAAATTGGATAATCAAAGACGTATTGCTGTTAAAAGGTTTAATAGGAAAGCTTGGCCTGATTCTCGTCAGTTTCTGGAGGAAGCTAAAGCTGTTGGTCAATTAAGGAATTATAGAATGGCAAATCTTCTTGGATGTTGTTATGAAGGTGAAGAGAGACTTCTTGTTGCTGAGTTTATGCCTAATGAAACTTTGGCTAAGCATCTTTTCCATTGGGAGTCACAACCGATGAAGTGGGCGATGCGACTAAGAGTAGCTTTACATATTGCTCAAGCTTTAGAATATTGTACTGGCAAAGGACGTGCACTCTACCATGACTTAAATGCTTATAGAGTTCTCTTTGATGATGACTCAAATCCAAGACTTTCATGCTTCGGTCTGATGAAAAATAGTAGAGACGGAAAGAGTTATAGCACCAACCTGGCGTTCACTCCTCCAGAGTATCTCAGAACAGGTCGTGTGACACCAGAAAGTGTGATGTACAGTTATGGAACTCTGTTGCTTGATCTTCTTAGTGGAAAACACATTCCTCCAAGTCATGCTCTGGACCTCATACGGGACAGGAACATTCAAATGTTGATCGACTCATGCTTGGAGGGTCAATTTTCAAGCGACGACGGGACTGAACTAATACGGTTAGCTTCTAGATGCTTGCAGTATGAGCCCCGGGAGCGGCCTAACCCGAAGTCTTTAGTTACTGCAATGATCCCTCTACAGAAGGATCTTGAGACTCCTTCTCATCAACTGATGGGCATACCAAGCAGCGCCTCAACGACACCCCTTTCACCACTTGGAGAAGCATGCCTAAGAACAGATCTAACTGCCATACATGAGATTCTTGAAAAGCTTAGCTATAAAGATGACGAGGGTGCAGCAACAGAGCTTTCGTTCCAGATGTGGACCAATCAGATGCAGGACTCGCTGAACTTCAAGAAGAAGGGTGATGTTGCTTTCCGACATAAAGAATTTGCAAATGCCATCGACTGCTATTCTCAGTTCATTGAGGGTGGGACAATGGTTTCCCCGACTGTTTATGCAAGAAGAAGTCTGTGTTACCTAATGAATGAGATGCCCCAAGAGGCGCTGAATGATGCAATGCAAGCCCAAGTGATATCTCCGGCTTGGCATATCGCATCGTATCTTCAAGCTGTAGCTCTATCAGCTCTAGGACAAGAGAACGAAGCACACGCTGCTCTTAAAGACGGATCAATGCTTGAAAGCAAAAGAAACAGGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

487

Amino Acids

54.8

Weight (kDa)

5.96

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	72 - 308	9e-27	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	72 - 307	2e-23	Protein kinase domain
TPR_BSK1_C	PF25575	341 - 458	1.8e-63	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63500 AT5G41260
fragaria_vesca	FvH4_5g02320 FvH4_5g02320 FvH4_5g02320
malus_domestica	MD06G1082000.v1.1
prunus_persica	Prupe.5G099200_v2.0.a1 Prupe.5G099200_v2.0.a1 Prupe.5G099200_v2.0.a1 Prupe.5G099200_v2.0.a1
pyrus_communis	pycom06g07890
rosa_chinensis	RchiOBHm_Chr7g0197831
rosa_multiflora	Rmu_sc0001082.1_g000020
rosa_roxburghii	Rroxscaffold_3G00258180
rosa_rugosa	Rorug07G0043800
rosa_samantha	Rh7AG167600 Rh7BG170500 Rh7CG177000 Rh7DG169500
rosa_wichuraiana	Rw7G014610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	898
AciI	CCGC	1 cut(s)	898
AclWI	GGATC	5 cut(s)	41, 64, 925, 954, 1438
AcsI	RAATTY	2 cut(s)	128, 1190
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	2 cut(s)	514, 707
AfiI	CCNNNNNNNGG	2 cut(s)	781, 897
AgsI	TTSAA	7 cut(s)	18, 797, 834, 1067, 1156, 1370, 1442
AjiI	CACGTC	1 cut(s)	527
AjnI	CCWGG	1 cut(s)	645
AjuI	GAANNNNNNNTTGG	2 cut(s)	635, 667
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	4 cut(s)	134, 376, 615, 947
Alw44I	GTGCAC	1 cut(s)	528
AlwI	GGATC	5 cut(s)	41, 64, 925, 954, 1438
AlwNI	CAGNNNCTG	1 cut(s)	301
Ama87I	CYCGRG	1 cut(s)	891
AoxI	GGCC	2 cut(s)	281, 899
ApaLI	GTGCAC	1 cut(s)	528
ApeKI	GCWGC	3 cut(s)	987, 1097, 1415
ApoI	RAATTY	2 cut(s)	128, 1190
AspLEI	GCGC	2 cut(s)	992, 1309
AspS9I	GGNCC	2 cut(s)	772, 1125
AsuC2I	CCSGG	2 cut(s)	892, 893
AsuHPI	GGTGA	5 cut(s)	110, 209, 386, 1002, 1178
AvaI	CYCGRG	1 cut(s)	891
AvaII	GGWCC	2 cut(s)	772, 1125
BaeGI	GKGCMC	1 cut(s)	532
BanII	GRGCYC	1 cut(s)	891
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	3 cut(s)	999, 1109, 1402
BccI	CCATC	2 cut(s)	967, 1211
BciT130I	CCWGG	1 cut(s)	647
BcnI	CCSGG	2 cut(s)	892, 893
BcoDI	GTCTC	4 cut(s)	134, 376, 615, 947
BfaI	CTAG	2 cut(s)	870, 1391
BfmI	CTRYAG	3 cut(s)	171, 938, 1374
BfoI	RGCGCY	2 cut(s)	993, 1310
BglII	AGATCT	1 cut(s)	1039
BisI	GCNGC	4 cut(s)	899, 988, 1098, 1416
BlpI	GCTNAGC	2 cut(s)	423, 1073
BlsI	GCNGC	4 cut(s)	900, 989, 1099, 1417
Bme1390I	CCNGG	3 cut(s)	647, 892, 893
Bme18I	GGWCC	2 cut(s)	772, 1125
BmeT110I	CYCGRG	1 cut(s)	891
BmgBI	CACGTC	1 cut(s)	527
BmgT120I	GGNCC	2 cut(s)	772, 1125
BmrFI	CCNGG	3 cut(s)	647, 892, 893
BmsI	GCATC	7 cut(s)	436, 456, 863, 1125, 1284, 1306, 1367
BpmI	CTGGAG	2 cut(s)	323, 645
Bpu1102I	GCTNAGC	2 cut(s)	423, 1073
BpuEI	CTTGAG	2 cut(s)	480, 971
BpuMI	CCSGG	2 cut(s)	892, 893
BsaJI	CCNNGG	2 cut(s)	890, 891
Bsc4I	CCNNNNNNNGG	2 cut(s)	781, 897
Bse1I	ACTGG	1 cut(s)	520
Bse3DI	GCAATG	2 cut(s)	933, 1326
BseBI	CCWGG	1 cut(s)	647
BseDI	CCNNGG	2 cut(s)	890, 891
BseGI	GGATG	1 cut(s)	365
BseLI	CCNNNNNNNGG	2 cut(s)	781, 897
BseMI	GCAATG	2 cut(s)	933, 1326
BseMII	CTCAG	4 cut(s)	131, 387, 685, 1232
BseNI	ACTGG	1 cut(s)	520
BseRI	GAGGAG	1 cut(s)	648
BseSI	GKGCMC	1 cut(s)	532
BseXI	GCAGC	3 cut(s)	999, 1109, 1402
BsgI	GTGCAG	1 cut(s)	1116
BshFI	GGCC	2 cut(s)	283, 901
BsiHKAI	GWGCWC	1 cut(s)	532
BsiHKCI	CYCGRG	1 cut(s)	891
BsiSI	CCGG	2 cut(s)	892, 1343
BslFI	GGGAC	3 cut(s)	797, 859, 1249
BslI	CCNNNNNNNGG	2 cut(s)	781, 897
BsmAI	GTCTC	4 cut(s)	134, 376, 615, 947
BsmBI	CGTCTC	2 cut(s)	134, 615
BsmFI	GGGAC	3 cut(s)	797, 859, 1249
BsnI	GGCC	2 cut(s)	283, 901
BsoBI	CYCGRG	1 cut(s)	891
Bsp1286I	GDGCHC	2 cut(s)	532, 891
Bsp1407I	TGTACA	1 cut(s)	705
Bsp143I	GATC	8 cut(s)	46, 56, 730, 804, 930, 946, 1039, 1430
Bsp1720I	GCTNAGC	2 cut(s)	423, 1073
BspACI	CCGC	1 cut(s)	898
BspANI	GGCC	2 cut(s)	283, 901
BspCNI	CTCAG	4 cut(s)	130, 388, 684, 1231
BspPI	GGATC	5 cut(s)	41, 64, 925, 954, 1438
BsrBI	CCGCTC	1 cut(s)	898
BsrDI	GCAATG	2 cut(s)	933, 1326
BsrGI	TGTACA	1 cut(s)	705
BsrI	ACTGG	1 cut(s)	520
BssECI	CCNNGG	2 cut(s)	890, 891
BssMI	GATC	8 cut(s)	46, 56, 730, 804, 930, 946, 1039, 1430
Bst2UI	CCWGG	1 cut(s)	647
Bst4CI	ACNGT	3 cut(s)	710, 861, 1255
Bst6I	CTCTTC	1 cut(s)	372
BstAPI	GCANNNNNTGC	1 cut(s)	1415
BstAUI	TGTACA	1 cut(s)	705
BstC8I	GCNNGC	3 cut(s)	878, 1027, 1326
BstDEI	CTNAG	9 cut(s)	117, 396, 423, 473, 671, 737, 1031, 1073, 1218
BstF5I	GGATG	1 cut(s)	365
BstH2I	RGCGCY	2 cut(s)	993, 1310
BstHHI	GCGC	2 cut(s)	992, 1309
BstKTI	GATC	8 cut(s)	49, 59, 733, 807, 933, 949, 1042, 1433
BstMAI	GTCTC	4 cut(s)	134, 376, 615, 947
BstMBI	GATC	8 cut(s)	46, 56, 730, 804, 930, 946, 1039, 1430
BstMWI	GCNNNNNNNGC	7 cut(s)	886, 895, 984, 1144, 1325, 1385, 1415
BstNI	CCWGG	1 cut(s)	647
BstNSI	RCATGY	1 cut(s)	1029
BstSCI	CCNGG	3 cut(s)	645, 890, 891
BstSFI	CTRYAG	3 cut(s)	171, 938, 1374
BstSLI	GKGCMC	1 cut(s)	532
BstV1I	GCAGC	3 cut(s)	999, 1109, 1402
BstX2I	RGATCY	3 cut(s)	56, 946, 1039
BstYI	RGATCY	3 cut(s)	56, 946, 1039
BsuRI	GGCC	2 cut(s)	283, 901
BtgZI	GCGATG	1 cut(s)	479
BtrI	CACGTC	1 cut(s)	527
BtsCI	GGATG	1 cut(s)	365
Cac8I	GCNNGC	3 cut(s)	878, 1027, 1326
CaiI	CAGNNNCTG	1 cut(s)	301
CfoI	GCGC	2 cut(s)	992, 1309
Cfr13I	GGNCC	2 cut(s)	772, 1125
Cfr9I	CCCGGG	1 cut(s)	891
Csp6I	GTAC	2 cut(s)	513, 706
CviAII	CATG	8 cut(s)	65, 194, 539, 594, 764, 813, 1026, 1055
CviQI	GTAC	2 cut(s)	513, 706
DdeI	CTNAG	9 cut(s)	117, 396, 423, 473, 671, 737, 1031, 1073, 1218
DpnI	GATC	8 cut(s)	48, 58, 732, 806, 932, 948, 1041, 1432
DpnII	GATC	8 cut(s)	46, 56, 730, 804, 930, 946, 1039, 1430
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco24I	GRGCYC	1 cut(s)	891
Eco32I	GATATC	1 cut(s)	1338
Eco47I	GGWCC	2 cut(s)	772, 1125
Eco57I	CTGAAG	1 cut(s)	72
Eco88I	CYCGRG	1 cut(s)	891
EcoRI	GAATTC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	645
EcoRV	GATATC	1 cut(s)	1338
EcoT38I	GRGCYC	1 cut(s)	891
Esp3I	CGTCTC	2 cut(s)	134, 615
FaeI	CATG	8 cut(s)	68, 197, 542, 597, 767, 816, 1029, 1058
FalI	AAGNNNNNCTT	4 cut(s)	369, 401, 466, 498
FaqI	GGGAC	3 cut(s)	797, 859, 1249
FatI	CATG	8 cut(s)	64, 193, 538, 593, 763, 812, 1025, 1054
Fnu4HI	GCNGC	4 cut(s)	899, 988, 1098, 1416
FokI	GGATG	1 cut(s)	372
FriOI	GRGCYC	1 cut(s)	891
Fsp4HI	GCNGC	4 cut(s)	899, 988, 1098, 1416
FspBI	CTAG	2 cut(s)	870, 1391
GlaI	GCGC	2 cut(s)	991, 1308
GluI	GCNGC	4 cut(s)	899, 988, 1098, 1416
GsuI	CTGGAG	2 cut(s)	323, 645
HaeII	RGCGCY	2 cut(s)	993, 1310
HaeIII	GGCC	2 cut(s)	283, 901
HapII	CCGG	2 cut(s)	892, 1343
HhaI	GCGC	2 cut(s)	992, 1309
Hin1II	CATG	8 cut(s)	68, 197, 542, 597, 767, 816, 1029, 1058
Hin6I	GCGC	2 cut(s)	990, 1307
HinP1I	GCGC	2 cut(s)	990, 1307
HindIII	AAGCTT	3 cut(s)	276, 498, 1070
HinfI	GANTC	7 cut(s)	287, 443, 575, 809, 955, 1060, 1142
HpaII	CCGG	2 cut(s)	892, 1343
HphI	GGTGA	5 cut(s)	110, 209, 386, 1002, 1178
Hpy166II	GTNNAC	3 cut(s)	530, 654, 1125
Hpy188I	TCNGA	6 cut(s)	46, 190, 606, 674, 1134, 1181
Hpy8I	GTNNAC	3 cut(s)	530, 654, 1125
Hpy99I	CGWCG	2 cut(s)	842, 845
HpyAV	CCTTC	6 cut(s)	47, 95, 365, 937, 969, 1156
HpyCH4III	ACNGT	3 cut(s)	710, 861, 1255
HpyCH4IV	ACGT	3 cut(s)	143, 247, 526
HpyF10VI	GCNNNNNNNGC	7 cut(s)	886, 895, 984, 1144, 1325, 1385, 1415
HpyF3I	CTNAG	9 cut(s)	117, 396, 423, 473, 671, 737, 1031, 1073, 1218
HpySE526I	ACGT	3 cut(s)	143, 247, 526
Hsp92II	CATG	8 cut(s)	68, 197, 542, 597, 767, 816, 1029, 1058
HspAI	GCGC	2 cut(s)	990, 1307
Kzo9I	GATC	8 cut(s)	46, 56, 730, 804, 930, 946, 1039, 1430
LmnI	GCTCC	2 cut(s)	211, 895
Lsp1109I	GCAGC	3 cut(s)	999, 1109, 1402
LweI	GCATC	7 cut(s)	436, 456, 863, 1125, 1284, 1306, 1367
MaeI	CTAG	2 cut(s)	870, 1391
MaeII	ACGT	3 cut(s)	143, 247, 526
MaeIII	GTNAC	5 cut(s)	70, 444, 685, 919, 1277
MalI	GATC	8 cut(s)	48, 58, 732, 806, 932, 948, 1041, 1432
MbiI	CCGCTC	1 cut(s)	898
MboI	GATC	8 cut(s)	46, 56, 730, 804, 930, 946, 1039, 1430
MboII	GAAGA	7 cut(s)	98, 344, 389, 725, 1171, 1278, 1358
MfeI	CAATTG	1 cut(s)	135
MflI	RGATCY	3 cut(s)	56, 946, 1039
MhlI	GDGCHC	2 cut(s)	532, 891
MluCI	AATT	7 cut(s)	128, 135, 230, 326, 334, 827, 1190
MlyI	GAGTC	5 cut(s)	452, 569, 803, 949, 1136
MmeI	TCCRAC	1 cut(s)	1204
MseI	TTAA	5 cut(s)	258, 267, 329, 545, 1422
MslI	CAYNNNNRTG	1 cut(s)	797
MspI	CCGG	2 cut(s)	892, 1343
MspR9I	CCNGG	3 cut(s)	647, 892, 893
MunI	CAATTG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	647
MwoI	GCNNNNNNNGC	7 cut(s)	886, 895, 984, 1144, 1325, 1385, 1415
NciI	CCSGG	2 cut(s)	892, 893
NdeII	GATC	8 cut(s)	46, 56, 730, 804, 930, 946, 1039, 1430
NlaIII	CATG	8 cut(s)	68, 197, 542, 597, 767, 816, 1029, 1058
NmuCI	GTSAC	3 cut(s)	70, 444, 685
NspI	RCATGY	1 cut(s)	1029
PaeI	GCATGC	1 cut(s)	1029
PfeI	GAWTC	2 cut(s)	287, 1060
PkrI	GCNGC	4 cut(s)	900, 989, 1099, 1417
PleI	GAGTC	5 cut(s)	451, 569, 803, 949, 1136
PpsI	GAGTC	5 cut(s)	451, 569, 803, 949, 1136
Psp6I	CCWGG	1 cut(s)	645
PspGI	CCWGG	1 cut(s)	645
PspPI	GGNCC	2 cut(s)	772, 1125
PstNI	CAGNNNCTG	1 cut(s)	301
PsuI	RGATCY	3 cut(s)	56, 946, 1039
RsaI	GTAC	2 cut(s)	514, 707
RsaNI	GTAC	2 cut(s)	513, 706
RseI	CAYNNNNRTG	1 cut(s)	797
SaqAI	TTAA	5 cut(s)	258, 267, 329, 545, 1422
SatI	GCNGC	4 cut(s)	899, 988, 1098, 1416
Sau3AI	GATC	8 cut(s)	46, 56, 730, 804, 930, 946, 1039, 1430
Sau96I	GGNCC	2 cut(s)	772, 1125
SchI	GAGTC	5 cut(s)	452, 569, 803, 949, 1136
ScrFI	CCNGG	3 cut(s)	647, 892, 893
SduI	GDGCHC	2 cut(s)	532, 891
SfaNI	GCATC	7 cut(s)	436, 456, 863, 1125, 1284, 1306, 1367
SfcI	CTRYAG	3 cut(s)	171, 938, 1374
SinI	GGWCC	2 cut(s)	772, 1125
SmaI	CCCGGG	1 cut(s)	893
SmiMI	CAYNNNNRTG	1 cut(s)	797
SmlI	CTYRAG	2 cut(s)	495, 950
SmoI	CTYRAG	2 cut(s)	495, 950
SphI	GCATGC	1 cut(s)	1029
Sse9I	AATT	7 cut(s)	128, 135, 230, 326, 334, 827, 1190
SsiI	CCGC	1 cut(s)	898
SspI	AATATT	1 cut(s)	509
SspMI	CTAG	2 cut(s)	870, 1391
StyD4I	CCNGG	3 cut(s)	645, 890, 891
TaaI	ACNGT	3 cut(s)	710, 861, 1255
TaiI	ACGT	3 cut(s)	146, 250, 529
TaqI	TCGA	2 cut(s)	807, 1206
TaqII	GACCGA	1 cut(s)	590
TasI	AATT	7 cut(s)	128, 135, 230, 326, 334, 827, 1190
TatI	WGTACW	2 cut(s)	512, 705
TauI	GCSGC	1 cut(s)	901
TfiI	GAWTC	2 cut(s)	287, 1060
Tru1I	TTAA	5 cut(s)	258, 267, 329, 545, 1422
Tru9I	TTAA	5 cut(s)	258, 267, 329, 545, 1422
TseFI	GTSAC	3 cut(s)	70, 444, 685
TseI	GCWGC	3 cut(s)	987, 1097, 1415
Tsp45I	GTSAC	3 cut(s)	70, 444, 685
TspDTI	ATGAA	8 cut(s)	99, 384, 426, 470, 582, 623, 1213, 1301
TspGWI	ACGGA	2 cut(s)	639, 1443
TspMI	CCCGGG	1 cut(s)	891
VneI	GTGCAC	1 cut(s)	528
VpaK11BI	GGWCC	2 cut(s)	772, 1125
XapI	RAATTY	2 cut(s)	128, 1190
XbaI	TCTAGA	1 cut(s)	869
XceI	RCATGY	1 cut(s)	1029
XmaI	CCCGGG	1 cut(s)	891
XspI	CTAG	2 cut(s)	870, 1391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.