MD06G1082000.v1.1

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
20132998 .. 20141037
8040 bp
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UTR
Exon/CDS
Intron
MD06G1082000.v1.1.491

Sequence Viewer

Length: 1467 bp
ATGGGTTGTGGGTGTTCCAACCTCTCCGCGTGTTGTTGGGGCCCAGAAGTTGACGGACCAGTTCTTGAGACCCAAAGTGTGGAAAATGAGGAGAGCAATGAACTTGATTTGCCTGCATTTCATGAATACACAATCGAGCAACTTAGGATGGCGACATCTGGATTCGCTGTGGAGAATATAGTTTCTGAACACGGGGAAAAGGCCCCAAATGTGGTTTACAAAGGGAAGCTTGAGGATCAAAGACGGATAGCTGTCAAAAGATTCAACAGATCAGCTTGGCCTGATACCCGACAATTTTTGGAAGAAGCAAGGGCTGTTGGGCAGCTCCGGAACACCCGATTGGCAAATTTACTTGGTTGTTGCTGTGAAAGTGACGAGAGACTGCTTGTTGCTGAATATATGCCCAATGATACACTGGCAAAGCATTTATTCCATTGGGAAACACAACCCATGAAGTGGGCAATGCGGTTAAGGGTGGCTTTATATCTTGCACAGGCCCTTGAATATTGTACCAGTAAAGGACGTGCCCTTTATCATGATTTAAATGCATATAGAATTGTCTTTGATGATGATTGTAACCCTAGACTTTCATGCTTTGGTCTGATGAAAAACAGTAGAGATGGAAAAAGCTACAGTACAAACCTGGCATTTACTCCTCCTGAGTATCTAAGGACAGGAAGAGTTACCGCAGAAAGTGTAATGTATAGCTTTGGCACCCTTTTGCTTGACCTCCTCAGTGGAAAACATATTCCTCCGAGCCATGCACTCGACCTTATTCGCGACAGGAATCTTCAGATGCTAACAGATTCTTGTTTGGAAGGCCAATTCTCAAATGACGAGGGAACAGAATTAGTCCGTTTGGCTTCAAGATGTTTGCAATATGAACCGCGAGAGCGTCCTAATCCAAAGTCATTAGTTGCTGCCTTGGTTCCTCTTCAGAAGGACACAGAGGTTCCTTCTCATGTATTGATGGGTATACCACATGGTGCAGCAGCTTTACCTAATCTATCACCATTTGGTGAAGCTTGTGTGAGGACGGATTTAACGGCCATACATGAGATCATAGAAAGTATTGGATACAAGGATGATGAAGGTGCAGCAACTGAGCTTTCATTCCAGATGTGGACCAACCAGATGCAGGAGACATTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCCGTCATAAAGATTTCAGAGCTGCAATTGAGTGCTACGCCCAGTTTATTGATGTCGGAACCATGGTTTCCCCGACAGTTTTTGCACGCCGTAGCTTGTCATACCTCATGAATGATATGCCACAGGAAGCCTTGAATGATGCGGCACAAGCCCAAGTGATTTTCCCTGTTTGGCACATTGCCTTGTATTTGCAAGCTGCAGCACTTTTTGCACTTGGAAAGAATGACGAGGCACAGGTAGCCCTCAAAGAGGGTAGTGTACTTGAAAGTAAAAGGAATGCAAGTGCTTGA

Protein Analysis

489

Amino Acids

54.61

Weight (kDa)

5.43

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 71 - 308 2.6e-26 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 71 - 306 3.5e-22 Protein kinase domain
TPR_BSK1_C PF25575 341 - 458 1.1e-62 Serine/threonine-protein kinase BSK1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 713
AccB7I CCANNNNNTGG 2 cut(s) 79, 456
AccI GTMKAC 1 cut(s) 976
AccII CGCG 3 cut(s) 29, 780, 889
AccIII TCCGGA 1 cut(s) 327
AciI CCGC 5 cut(s) 27, 466, 687, 887, 1319
AclWI GGATC 1 cut(s) 243
AcoI YGGCCR 1 cut(s) 1047
AcsI RAATTY 1 cut(s) 346
AcuI CTGAAG 2 cut(s) 776, 920
AdeI CACNNNGTG 1 cut(s) 986
AfaI GTAC 3 cut(s) 511, 637, 1437
AfiI CCNNNNNNNGG 5 cut(s) 79, 211, 456, 1138, 1426
AgsI TTSAA 6 cut(s) 265, 503, 867, 1150, 1312, 1442
AjiI CACGTC 1 cut(s) 524
AjnI CCWGG 1 cut(s) 642
AjuI GAANNNNNNNTTGG 2 cut(s) 323, 355
Alw26I GTCTC 3 cut(s) 62, 373, 1136
AlwI GGATC 1 cut(s) 243
AlwNI CAGNNNCTG 1 cut(s) 1103
Aor13HI TCCGGA 1 cut(s) 327
AoxI GGCC 6 cut(s) 40, 201, 278, 495, 820, 1047
ApaI GGGCCC 1 cut(s) 44
ApeKI GCWGC 8 cut(s) 322, 920, 989, 992, 1097, 1199, 1373, 1376
ApoI RAATTY 1 cut(s) 346
AspS9I GGNCC 6 cut(s) 40, 41, 56, 202, 496, 1125
AsuHPI GGTGA 3 cut(s) 1002, 1031, 1178
AvaII GGWCC 2 cut(s) 56, 1125
BaeGI GKGCMC 2 cut(s) 44, 529
BanI GGYRCC 1 cut(s) 713
BanII GRGCYC 1 cut(s) 44
BbvI GCAGC 8 cut(s) 334, 907, 1001, 1004, 1109, 1186, 1360, 1388
BccI CCATC 3 cut(s) 142, 614, 964
BceAI ACGGC 2 cut(s) 1062, 1251
BciT130I CCWGG 1 cut(s) 644
BciVI GTATCC 1 cut(s) 1070
BcoDI GTCTC 3 cut(s) 62, 373, 1136
BfaI CTAG 1 cut(s) 582
BfmI CTRYAG 2 cut(s) 631, 1374
BfuI GTATCC 1 cut(s) 1070
BisI GCNGC 9 cut(s) 323, 921, 990, 993, 1098, 1200, 1320, 1374, 1377
BlsI GCNGC 9 cut(s) 324, 922, 991, 994, 1099, 1201, 1321, 1375, 1378
Bme1390I CCNGG 1 cut(s) 644
Bme18I GGWCC 2 cut(s) 56, 1125
BmgBI CACGTC 1 cut(s) 524
BmgT120I GGNCC 6 cut(s) 40, 41, 56, 202, 496, 1125
BmiI GGNNCC 7 cut(s) 41, 42, 204, 715, 930, 954, 1237
BmrFI CCNGG 1 cut(s) 644
BmrI ACTGGG 1 cut(s) 1213
BmsI GCATC 3 cut(s) 786, 1125, 1306
BmuI ACTGGG 1 cut(s) 1213
BpuEI CTTGAG 2 cut(s) 86, 251
BsaI GGTCTC 1 cut(s) 62
BsaJI CCNNGG 2 cut(s) 924, 1239
BsaWI WCCGGW 1 cut(s) 327
Bsc4I CCNNNNNNNGG 5 cut(s) 79, 211, 456, 1138, 1426
Bse1I ACTGG 4 cut(s) 59, 420, 513, 1219
Bse3DI GCAATG 3 cut(s) 103, 468, 1353
BseAI TCCGGA 1 cut(s) 327
BseBI CCWGG 1 cut(s) 644
BseDI CCNNGG 2 cut(s) 924, 1239
BseGI GGATG 2 cut(s) 153, 1090
BseLI CCNNNNNNNGG 5 cut(s) 79, 211, 456, 1138, 1426
BseMI GCAATG 3 cut(s) 103, 468, 1353
BseMII CTCAG 3 cut(s) 651, 748, 1095
BseNI ACTGG 4 cut(s) 59, 420, 513, 1219
BseRI GAGGAG 3 cut(s) 104, 645, 722
BseSI GKGCMC 2 cut(s) 44, 529
BseXI GCAGC 8 cut(s) 334, 907, 1001, 1004, 1109, 1186, 1360, 1388
BsgI GTGCAG 2 cut(s) 1008, 1116
Bsh1236I CGCG 3 cut(s) 29, 780, 889
BshFI GGCC 6 cut(s) 42, 203, 280, 497, 822, 1049
BshNI GGYRCC 1 cut(s) 713
BsiSI CCGG 1 cut(s) 328
BslI CCNNNNNNNGG 5 cut(s) 79, 211, 456, 1138, 1426
BsmAI GTCTC 3 cut(s) 62, 373, 1136
BsmI GAATGC 1 cut(s) 1459
BsnI GGCC 6 cut(s) 42, 203, 280, 497, 822, 1049
Bso31I GGTCTC 1 cut(s) 62
Bsp120I GGGCCC 1 cut(s) 40
Bsp1286I GDGCHC 2 cut(s) 44, 529
Bsp13I TCCGGA 1 cut(s) 327
Bsp143I GATC 3 cut(s) 235, 269, 1059
Bsp19I CCATGG 1 cut(s) 1239
Bsp68I TCGCGA 1 cut(s) 780
BspACI CCGC 5 cut(s) 27, 466, 687, 887, 1319
BspANI GGCC 6 cut(s) 42, 203, 280, 497, 822, 1049
BspCNI CTCAG 3 cut(s) 652, 747, 1096
BspEI TCCGGA 1 cut(s) 327
BspFNI CGCG 3 cut(s) 29, 780, 889
BspHI TCATGA 3 cut(s) 121, 535, 1284
BspLI GGNNCC 7 cut(s) 41, 42, 204, 715, 930, 954, 1237
BspMAI CTGCAG 1 cut(s) 1378
BspPI GGATC 1 cut(s) 243
BspT107I GGYRCC 1 cut(s) 713
BspTNI GGTCTC 1 cut(s) 62
BsrDI GCAATG 3 cut(s) 103, 468, 1353
BsrI ACTGG 4 cut(s) 59, 420, 513, 1219
BssECI CCNNGG 2 cut(s) 924, 1239
BssMI GATC 3 cut(s) 235, 269, 1059
BssNAI GTATAC 1 cut(s) 977
BssT1I CCWWGG 2 cut(s) 924, 1239
Bst1107I GTATAC 1 cut(s) 977
Bst2UI CCWGG 1 cut(s) 644
Bst4CI ACNGT 3 cut(s) 614, 635, 1255
Bst6I CTCTTC 2 cut(s) 673, 939
BstAPI GCANNNNNTGC 1 cut(s) 1385
BstC8I GCNNGC 3 cut(s) 114, 1264, 1371
BstDEI CTNAG 5 cut(s) 143, 660, 668, 734, 1104
BstDSI CCRYGG 1 cut(s) 1239
BstENI CCTNNNNNAGG 1 cut(s) 1424
BstF5I GGATG 2 cut(s) 153, 1090
BstFNI CGCG 3 cut(s) 29, 780, 889
BstKTI GATC 3 cut(s) 238, 272, 1062
BstMAI GTCTC 3 cut(s) 62, 373, 1136
BstMBI GATC 3 cut(s) 235, 269, 1059
BstMWI GCNNNNNNNGC 3 cut(s) 1325, 1385, 1415
BstNI CCWGG 1 cut(s) 644
BstSCI CCNGG 1 cut(s) 642
BstSFI CTRYAG 2 cut(s) 631, 1374
BstSLI GKGCMC 2 cut(s) 44, 529
BstUI CGCG 3 cut(s) 29, 780, 889
BstV1I GCAGC 8 cut(s) 334, 907, 1001, 1004, 1109, 1186, 1360, 1388
BstZ17I GTATAC 1 cut(s) 977
BsuI GTATCC 1 cut(s) 1070
BsuRI GGCC 6 cut(s) 42, 203, 280, 497, 822, 1049
BtgI CCRYGG 1 cut(s) 1239
BtrI CACGTC 1 cut(s) 524
BtsCI GGATG 2 cut(s) 153, 1090
BtsIMutI CAGTG 2 cut(s) 413, 742
BtuMI TCGCGA 1 cut(s) 780
Cac8I GCNNGC 3 cut(s) 114, 1264, 1371
CaiI CAGNNNCTG 1 cut(s) 1103
CciI TCATGA 3 cut(s) 121, 535, 1284
Cfr13I GGNCC 6 cut(s) 40, 41, 56, 202, 496, 1125
CseI GACGC 1 cut(s) 884
Csp6I GTAC 3 cut(s) 510, 636, 1436
CviQI GTAC 3 cut(s) 510, 636, 1436
DdeI CTNAG 5 cut(s) 143, 660, 668, 734, 1104
DpnI GATC 3 cut(s) 237, 271, 1061
DpnII GATC 3 cut(s) 235, 269, 1059
DraI TTTAAA 1 cut(s) 543
DraIII CACNNNGTG 1 cut(s) 986
EaeI YGGCCR 1 cut(s) 1047
Eam1104I CTCTTC 2 cut(s) 673, 939
EarI CTCTTC 2 cut(s) 673, 939
Eco130I CCWWGG 2 cut(s) 924, 1239
Eco24I GRGCYC 1 cut(s) 44
Eco31I GGTCTC 1 cut(s) 62
Eco47I GGWCC 2 cut(s) 56, 1125
Eco57I CTGAAG 2 cut(s) 776, 920
EcoNI CCTNNNNNAGG 1 cut(s) 1424
EcoO109I RGGNCCY 3 cut(s) 40, 202, 496
EcoRII CCWGG 1 cut(s) 642
EcoT14I CCWWGG 2 cut(s) 924, 1239
EcoT22I ATGCAT 1 cut(s) 550
EcoT38I GRGCYC 1 cut(s) 44
ErhI CCWWGG 2 cut(s) 924, 1239
FalI AAGNNNNNCTT 4 cut(s) 213, 245, 463, 495
FblI GTMKAC 1 cut(s) 976
Fnu4HI GCNGC 9 cut(s) 323, 921, 990, 993, 1098, 1200, 1320, 1374, 1377
FokI GGATG 2 cut(s) 160, 1097
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 9 cut(s) 323, 921, 990, 993, 1098, 1200, 1320, 1374, 1377
FspBI CTAG 1 cut(s) 582
GluI GCNGC 9 cut(s) 323, 921, 990, 993, 1098, 1200, 1320, 1374, 1377
HaeIII GGCC 6 cut(s) 42, 203, 280, 497, 822, 1049
HapII CCGG 1 cut(s) 328
HgaI GACGC 1 cut(s) 884
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HindIII AAGCTT 2 cut(s) 227, 1023
HinfI GANTC 4 cut(s) 162, 261, 787, 806
HpaII CCGG 1 cut(s) 328
HphI GGTGA 3 cut(s) 1002, 1031, 1178
Hpy166II GTNNAC 5 cut(s) 52, 217, 977, 1125, 1436
Hpy188I TCNGA 7 cut(s) 187, 603, 756, 795, 939, 1196, 1235
Hpy8I GTNNAC 5 cut(s) 52, 217, 977, 1125, 1436
HpyAV CCTTC 4 cut(s) 812, 934, 966, 1085
HpyCH4III ACNGT 3 cut(s) 614, 635, 1255
HpyCH4IV ACGT 1 cut(s) 523
HpyF10VI GCNNNNNNNGC 3 cut(s) 1325, 1385, 1415
HpyF3I CTNAG 5 cut(s) 143, 660, 668, 734, 1104
HpySE526I ACGT 1 cut(s) 523
Kpn2I TCCGGA 1 cut(s) 327
Kzo9I GATC 3 cut(s) 235, 269, 1059
LmnI GCTCC 1 cut(s) 330
Lsp1109I GCAGC 8 cut(s) 334, 907, 1001, 1004, 1109, 1186, 1360, 1388
LweI GCATC 3 cut(s) 786, 1125, 1306
MaeI CTAG 1 cut(s) 582
MaeII ACGT 1 cut(s) 523
MaeIII GTNAC 3 cut(s) 371, 575, 682
MalI GATC 3 cut(s) 237, 271, 1061
MboI GATC 3 cut(s) 235, 269, 1059
MboII GAAGA 4 cut(s) 314, 690, 782, 926
MfeI CAATTG 1 cut(s) 1203
MhlI GDGCHC 2 cut(s) 44, 529
MluCI AATT 6 cut(s) 293, 346, 555, 824, 848, 1203
MmeI TCCRAC 2 cut(s) 42, 1213
Mph1103I ATGCAT 1 cut(s) 550
MroI TCCGGA 1 cut(s) 327
MseI TTAA 3 cut(s) 470, 542, 1043
MspI CCGG 1 cut(s) 328
MspR9I CCNGG 1 cut(s) 644
MunI CAATTG 1 cut(s) 1203
Mva1269I GAATGC 1 cut(s) 1459
MvaI CCWGG 1 cut(s) 644
MvnI CGCG 3 cut(s) 29, 780, 889
MwoI GCNNNNNNNGC 3 cut(s) 1325, 1385, 1415
NcoI CCATGG 1 cut(s) 1239
NdeII GATC 3 cut(s) 235, 269, 1059
NlaIV GGNNCC 7 cut(s) 41, 42, 204, 715, 930, 954, 1237
NmuCI GTSAC 1 cut(s) 371
NruI TCGCGA 1 cut(s) 780
NsiI ATGCAT 1 cut(s) 550
PagI TCATGA 3 cut(s) 121, 535, 1284
PctI GAATGC 1 cut(s) 1459
PfeI GAWTC 4 cut(s) 162, 261, 787, 806
PflMI CCANNNNNTGG 2 cut(s) 79, 456
PkrI GCNGC 9 cut(s) 324, 922, 991, 994, 1099, 1201, 1321, 1375, 1378
Psp6I CCWGG 1 cut(s) 642
PspGI CCWGG 1 cut(s) 642
PspN4I GGNNCC 7 cut(s) 41, 42, 204, 715, 930, 954, 1237
PspOMI GGGCCC 1 cut(s) 40
PspPI GGNCC 6 cut(s) 40, 41, 56, 202, 496, 1125
PstI CTGCAG 1 cut(s) 1378
PstNI CAGNNNCTG 1 cut(s) 1103
RruI TCGCGA 1 cut(s) 780
RsaI GTAC 3 cut(s) 511, 637, 1437
RsaNI GTAC 3 cut(s) 510, 636, 1436
SaqAI TTAA 3 cut(s) 470, 542, 1043
SatI GCNGC 9 cut(s) 323, 921, 990, 993, 1098, 1200, 1320, 1374, 1377
Sau3AI GATC 3 cut(s) 235, 269, 1059
Sau96I GGNCC 6 cut(s) 40, 41, 56, 202, 496, 1125
ScrFI CCNGG 1 cut(s) 644
SduI GDGCHC 2 cut(s) 44, 529
SfaNI GCATC 3 cut(s) 786, 1125, 1306
SfcI CTRYAG 2 cut(s) 631, 1374
SinI GGWCC 2 cut(s) 56, 1125
SmiI ATTTAAAT 1 cut(s) 543
SmlI CTYRAG 2 cut(s) 65, 230
SmoI CTYRAG 2 cut(s) 65, 230
Sse9I AATT 6 cut(s) 293, 346, 555, 824, 848, 1203
SsiI CCGC 5 cut(s) 27, 466, 687, 887, 1319
SspI AATATT 1 cut(s) 506
SspMI CTAG 1 cut(s) 582
StyD4I CCNGG 1 cut(s) 642
StyI CCWWGG 2 cut(s) 924, 1239
SwaI ATTTAAAT 1 cut(s) 543
TaaI ACNGT 3 cut(s) 614, 635, 1255
TaiI ACGT 1 cut(s) 526
TaqI TCGA 2 cut(s) 135, 768
TasI AATT 6 cut(s) 293, 346, 555, 824, 848, 1203
TatI WGTACW 2 cut(s) 635, 1435
TauI GCSGC 1 cut(s) 1322
TfiI GAWTC 4 cut(s) 162, 261, 787, 806
Tru1I TTAA 3 cut(s) 470, 542, 1043
Tru9I TTAA 3 cut(s) 470, 542, 1043
TscAI CASTG 2 cut(s) 420, 742
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 8 cut(s) 322, 920, 989, 992, 1097, 1199, 1373, 1376
Tsp45I GTSAC 1 cut(s) 371
TspGWI ACGGA 5 cut(s) 69, 259, 845, 1052, 1169
TspRI CASTG 2 cut(s) 420, 742
Van91I CCANNNNNTGG 2 cut(s) 79, 456
VpaK11BI GGWCC 2 cut(s) 56, 1125
XagI CCTNNNNNAGG 1 cut(s) 1424
XapI RAATTY 1 cut(s) 346
XcmI CCANNNNNNNNNTGG 1 cut(s) 412
XmiI GTMKAC 1 cut(s) 976
XspI CTAG 1 cut(s) 582
Zsp2I ATGCAT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.