Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0010672

Physical Location & Seq

Genomic Coordinates Reverse (-)

13275589 .. 13280886

Gene Structure 5298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG170500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGGGTGTGGGTGTTCGAAGCTCTATGCGTGTTGTGGAGGTCCAGAAGATAATGTACCAGTTCCTGAGCCCCAGACTGTGGAAAATGAGGAAGGAAATGAACTTGATTTGCCTGCATTTCATGAATACACAATTGAGCAACTTAGGACAGCGACATCAGGGTTTGCTGTTGAGAATATAGTTTCTGAACATGGGGAGAAAGCCCCTAATGTTGTTTACAAGGGGAAGCTTGACAATCAAAGAAGGATTGCTGTCAAAAGATTCAATAGATCAGCTTGGCCCGATTCTCGTCAATTTTTGGAAGAAGCAAGGTCTGTGGGGCAGCTCCGCAACATCCGATTAGCAAATTTACTTGGCTGTTGTTGCGAAGGTGATGAGAGGTTACTTGTTGCTGAATATATGCCCAACGATACATTGGCAAAGCATTTATTTCATTGGGAAACCCAACCCATGAAGTGGGCAATGCGGTTACGGGTGGCTTTATATCTTGCACAGGCTCTTGAATATTGTACCAGTAGAGGACGTGCCCTTTATCACGATTTGAATGCTTATAGAATAGTTTTTGATGATGCACTCGACCTTATTCGGGACAGGAATCTTCAGATGTTAACAGATTCTTGTTTGGAAGGCCAATTTACAAATGATGAGGGAACTGAGTTAGTACGTTTAGCTTCACGATGTTTGCAATATGAACCCAGAGAGCGTCCTAATCCAAAGTCATTAGTTGCTGCTTTGGTTCCTCTCCAGAAGGACACTGAGGTTCCTTCTCATGTATTGATGGGTATACCACATGGTGCAGCAGCTTTACCTAGTCTATCACCACTTGGTGAAGCTTGTGTGAGGATGGATTTGACGGCCATCCATGAGATCTTAGAAAGTATTGGATATAAGGATGATGAAGGAGCAGCGACTGAGCTTTCATTCCAGATGTGGACCAACCAAATGCAGGACACGTTGAACTCGAAGAAAAAGGGTGATGTTTCTTTCCGTCATAAAGATTTCAGAGCTGCAATTGATTGCTTCACTCAGTTTATTGATGTTGGAACCATGGTTTCTCCGACAGTTTATGCACGCCGTAGTTTGTCTTATCTCATGAGTGAAATGCCACAGGAAGCCTTGAATGATGCGTCACAAGCCCAAGTGATTTCCCCTATTTGGCACATTGCATCCTATTTGCAAGCTGCAGCTCTTTTTTCACTTGGAAGGGATGATGAGGCACAAGTAGCCCTCAGAGAGGGTTCTGTACTTGAAACTAAAAGGAATGCAACAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

424

Amino Acids

47.52

Weight (kDa)

5.22

Isoelectric Point (pI)

50.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	71 - 190	3.9e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	71 - 189	4.1e-07	Protein kinase domain
TPR_BSK1_C	PF25575	277 - 394	2.2e-62	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63500 AT5G41260
fragaria_vesca	FvH4_5g02320 FvH4_5g02320 FvH4_5g02320
malus_domestica	MD06G1082000.v1.1
prunus_persica	Prupe.5G099200_v2.0.a1 Prupe.5G099200_v2.0.a1 Prupe.5G099200_v2.0.a1 Prupe.5G099200_v2.0.a1
pyrus_communis	pycom06g07890
rosa_chinensis	RchiOBHm_Chr7g0197831
rosa_multiflora	Rmu_sc0001082.1_g000020
rosa_roxburghii	Rroxscaffold_3G00258180
rosa_rugosa	Rorug07G0043800
rosa_samantha	Rh7AG167600 Rh7BG170500 Rh7CG177000 Rh7DG169500
rosa_wichuraiana	Rw7G014610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	79, 456
AccI	GTMKAC	1 cut(s)	784
AciI	CCGC	2 cut(s)	328, 466
AcoI	YGGCCR	1 cut(s)	855
AcsI	RAATTY	1 cut(s)	346
AcuI	CTGAAG	1 cut(s)	584
AdeI	CACNNNGTG	2 cut(s)	794, 827
AfaI	GTAC	4 cut(s)	57, 511, 663, 1245
AfiI	CCNNNNNNNGG	6 cut(s)	79, 456, 586, 946, 1155, 1234
AflIII	ACRYGT	1 cut(s)	951
AgsI	TTSAA	6 cut(s)	265, 503, 544, 958, 1120, 1250
AjiI	CACGTC	1 cut(s)	524
AlwNI	CAGNNNCTG	2 cut(s)	65, 911
AoxI	GGCC	3 cut(s)	278, 628, 855
ApeKI	GCWGC	8 cut(s)	322, 728, 797, 800, 905, 1007, 1181, 1184
ApoI	RAATTY	1 cut(s)	346
AspS9I	GGNCC	3 cut(s)	41, 279, 933
AsuHPI	GGTGA	4 cut(s)	383, 810, 839, 986
AsuII	TTCGAA	1 cut(s)	17
AvaII	GGWCC	2 cut(s)	41, 933
BaeGI	GKGCMC	1 cut(s)	529
BanII	GRGCYC	1 cut(s)	72
BarI	GAAGNNNNNNTAC	2 cut(s)	39, 71
BbvI	GCAGC	8 cut(s)	334, 715, 809, 812, 917, 994, 1168, 1196
BccI	CCATC	3 cut(s)	772, 838, 866
BceAI	ACGGC	2 cut(s)	870, 1059
BcgI	CGANNNNNNTGC	2 cut(s)	527, 561
BfaI	CTAG	1 cut(s)	810
BfmI	CTRYAG	1 cut(s)	1182
BglII	AGATCT	1 cut(s)	867
BisI	GCNGC	8 cut(s)	323, 729, 798, 801, 906, 1008, 1182, 1185
BlsI	GCNGC	8 cut(s)	324, 730, 799, 802, 907, 1009, 1183, 1186
Bme18I	GGWCC	2 cut(s)	41, 933
BmgBI	CACGTC	1 cut(s)	524
BmgT120I	GGNCC	3 cut(s)	41, 279, 933
BmiI	GGNNCC	3 cut(s)	738, 762, 1045
BmsI	GCATC	3 cut(s)	559, 1114, 1175
BpmI	CTGGAG	1 cut(s)	728
Bpu10I	CCTNAGC	1 cut(s)	66
Bpu14I	TTCGAA	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	1047
Bsc4I	CCNNNNNNNGG	6 cut(s)	79, 456, 586, 946, 1155, 1234
Bse1I	ACTGG	2 cut(s)	59, 513
Bse3DI	GCAATG	2 cut(s)	468, 1161
BseDI	CCNNGG	1 cut(s)	1047
BseGI	GGATG	6 cut(s)	333, 849, 858, 898, 1166, 1213
BseLI	CCNNNNNNNGG	6 cut(s)	79, 456, 586, 946, 1155, 1234
BseMI	GCAATG	2 cut(s)	468, 1161
BseMII	CTCAG	6 cut(s)	57, 645, 747, 903, 1040, 1243
BseNI	ACTGG	2 cut(s)	59, 513
BseSI	GKGCMC	1 cut(s)	529
BseXI	GCAGC	8 cut(s)	334, 715, 809, 812, 917, 994, 1168, 1196
BsgI	GTGCAG	1 cut(s)	816
BshFI	GGCC	3 cut(s)	280, 630, 857
BslFI	GGGAC	1 cut(s)	602
BslI	CCNNNNNNNGG	6 cut(s)	79, 456, 586, 946, 1155, 1234
BsmFI	GGGAC	1 cut(s)	602
BsmI	GAATGC	2 cut(s)	550, 1267
BsnI	GGCC	3 cut(s)	280, 630, 857
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1286I	GDGCHC	2 cut(s)	72, 529
Bsp143I	GATC	2 cut(s)	269, 867
Bsp19I	CCATGG	1 cut(s)	1047
BspACI	CCGC	2 cut(s)	328, 466
BspANI	GGCC	3 cut(s)	280, 630, 857
BspCNI	CTCAG	6 cut(s)	58, 646, 748, 904, 1039, 1242
BspHI	TCATGA	2 cut(s)	121, 1092
BspLI	GGNNCC	3 cut(s)	738, 762, 1045
BspMAI	CTGCAG	1 cut(s)	1186
BspT104I	TTCGAA	1 cut(s)	17
BsrDI	GCAATG	2 cut(s)	468, 1161
BsrI	ACTGG	2 cut(s)	59, 513
BssECI	CCNNGG	1 cut(s)	1047
BssMI	GATC	2 cut(s)	269, 867
BssNAI	GTATAC	1 cut(s)	785
BssT1I	CCWWGG	1 cut(s)	1047
Bst1107I	GTATAC	1 cut(s)	785
Bst4CI	ACNGT	2 cut(s)	79, 1063
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	3 cut(s)	114, 1072, 1179
BstDEI	CTNAG	8 cut(s)	66, 143, 654, 756, 871, 912, 1026, 1229
BstDSI	CCRYGG	1 cut(s)	1047
BstENI	CCTNNNNNAGG	1 cut(s)	1232
BstF5I	GGATG	6 cut(s)	333, 849, 858, 898, 1166, 1213
BstKTI	GATC	2 cut(s)	272, 870
BstMBI	GATC	2 cut(s)	269, 867
BstMWI	GCNNNNNNNGC	3 cut(s)	363, 1133, 1223
BstSFI	CTRYAG	1 cut(s)	1182
BstSLI	GKGCMC	1 cut(s)	529
BstV1I	GCAGC	8 cut(s)	334, 715, 809, 812, 917, 994, 1168, 1196
BstX2I	RGATCY	1 cut(s)	867
BstYI	RGATCY	1 cut(s)	867
BstZ17I	GTATAC	1 cut(s)	785
BsuRI	GGCC	3 cut(s)	280, 630, 857
BtgI	CCRYGG	1 cut(s)	1047
BtrI	CACGTC	1 cut(s)	524
BtsCI	GGATG	6 cut(s)	333, 849, 858, 898, 1166, 1213
BtsIMutI	CAGTG	1 cut(s)	753
Cac8I	GCNNGC	3 cut(s)	114, 1072, 1179
CaiI	CAGNNNCTG	2 cut(s)	65, 911
CciI	TCATGA	2 cut(s)	121, 1092
Cfr13I	GGNCC	3 cut(s)	41, 279, 933
CseI	GACGC	2 cut(s)	692, 1116
Csp6I	GTAC	4 cut(s)	56, 510, 662, 1244
CspCI	CAANNNNNGTGG	2 cut(s)	297, 332
CviAII	CATG	8 cut(s)	122, 191, 451, 770, 791, 863, 1048, 1093
CviQI	GTAC	4 cut(s)	56, 510, 662, 1244
DdeI	CTNAG	8 cut(s)	66, 143, 654, 756, 871, 912, 1026, 1229
DpnI	GATC	2 cut(s)	271, 869
DpnII	GATC	2 cut(s)	269, 867
DraIII	CACNNNGTG	2 cut(s)	794, 827
EaeI	YGGCCR	1 cut(s)	855
Eco130I	CCWWGG	1 cut(s)	1047
Eco24I	GRGCYC	1 cut(s)	72
Eco47I	GGWCC	2 cut(s)	41, 933
Eco57I	CTGAAG	1 cut(s)	584
EcoNI	CCTNNNNNAGG	1 cut(s)	1232
EcoT14I	CCWWGG	1 cut(s)	1047
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	1047
FaeI	CATG	8 cut(s)	125, 194, 454, 773, 794, 866, 1051, 1096
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	8 cut(s)	121, 190, 450, 769, 790, 862, 1047, 1092
FblI	GTMKAC	1 cut(s)	784
Fnu4HI	GCNGC	8 cut(s)	323, 729, 798, 801, 906, 1008, 1182, 1185
FokI	GGATG	6 cut(s)	320, 845, 856, 905, 1153, 1220
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	8 cut(s)	323, 729, 798, 801, 906, 1008, 1182, 1185
FspBI	CTAG	1 cut(s)	810
GluI	GCNGC	8 cut(s)	323, 729, 798, 801, 906, 1008, 1182, 1185
GsuI	CTGGAG	1 cut(s)	728
HaeIII	GGCC	3 cut(s)	280, 630, 857
HgaI	GACGC	2 cut(s)	692, 1116
Hin1II	CATG	8 cut(s)	125, 194, 454, 773, 794, 866, 1051, 1096
HincII	GTYRAC	1 cut(s)	609
HindII	GTYRAC	1 cut(s)	609
HindIII	AAGCTT	2 cut(s)	227, 831
HinfI	GANTC	4 cut(s)	261, 284, 595, 614
HpaI	GTTAAC	1 cut(s)	609
HphI	GGTGA	4 cut(s)	383, 810, 839, 986
Hpy166II	GTNNAC	4 cut(s)	217, 609, 785, 933
Hpy188I	TCNGA	6 cut(s)	187, 338, 603, 1004, 1059, 1232
Hpy8I	GTNNAC	4 cut(s)	217, 609, 785, 933
HpyAV	CCTTC	8 cut(s)	86, 237, 362, 620, 742, 774, 893, 1197
HpyCH4III	ACNGT	2 cut(s)	79, 1063
HpyCH4IV	ACGT	3 cut(s)	523, 664, 953
HpyF10VI	GCNNNNNNNGC	3 cut(s)	363, 1133, 1223
HpyF3I	CTNAG	8 cut(s)	66, 143, 654, 756, 871, 912, 1026, 1229
HpySE526I	ACGT	3 cut(s)	523, 664, 953
Hsp92II	CATG	8 cut(s)	125, 194, 454, 773, 794, 866, 1051, 1096
KspAI	GTTAAC	1 cut(s)	609
Kzo9I	GATC	2 cut(s)	269, 867
LmnI	GCTCC	2 cut(s)	330, 902
Lsp1109I	GCAGC	8 cut(s)	334, 715, 809, 812, 917, 994, 1168, 1196
LweI	GCATC	3 cut(s)	559, 1114, 1175
MaeI	CTAG	1 cut(s)	810
MaeII	ACGT	3 cut(s)	523, 664, 953
MaeIII	GTNAC	3 cut(s)	381, 468, 1128
MalI	GATC	2 cut(s)	271, 869
MboI	GATC	2 cut(s)	269, 867
MboII	GAAGA	4 cut(s)	59, 314, 590, 976
MfeI	CAATTG	2 cut(s)	132, 1011
MflI	RGATCY	1 cut(s)	867
MhlI	GDGCHC	2 cut(s)	72, 529
MluCI	AATT	5 cut(s)	132, 293, 346, 632, 1011
MmeI	TCCRAC	2 cut(s)	1021, 1082
MseI	TTAA	1 cut(s)	608
MunI	CAATTG	2 cut(s)	132, 1011
Mva1269I	GAATGC	2 cut(s)	550, 1267
MwoI	GCNNNNNNNGC	3 cut(s)	363, 1133, 1223
NcoI	CCATGG	1 cut(s)	1047
NdeII	GATC	2 cut(s)	269, 867
NlaIII	CATG	8 cut(s)	125, 194, 454, 773, 794, 866, 1051, 1096
NlaIV	GGNNCC	3 cut(s)	738, 762, 1045
NmuCI	GTSAC	1 cut(s)	1128
NspV	TTCGAA	1 cut(s)	17
PagI	TCATGA	2 cut(s)	121, 1092
PcsI	WCGNNNNNNNCGW	1 cut(s)	959
PctI	GAATGC	2 cut(s)	550, 1267
PfeI	GAWTC	4 cut(s)	261, 284, 595, 614
PflMI	CCANNNNNTGG	2 cut(s)	79, 456
PkrI	GCNGC	8 cut(s)	324, 730, 799, 802, 907, 1009, 1183, 1186
PspN4I	GGNNCC	3 cut(s)	738, 762, 1045
PspPI	GGNCC	3 cut(s)	41, 279, 933
PstI	CTGCAG	1 cut(s)	1186
PstNI	CAGNNNCTG	2 cut(s)	65, 911
PsuI	RGATCY	1 cut(s)	867
RsaI	GTAC	4 cut(s)	57, 511, 663, 1245
RsaNI	GTAC	4 cut(s)	56, 510, 662, 1244
SaqAI	TTAA	1 cut(s)	608
SatI	GCNGC	8 cut(s)	323, 729, 798, 801, 906, 1008, 1182, 1185
Sau3AI	GATC	2 cut(s)	269, 867
Sau96I	GGNCC	3 cut(s)	41, 279, 933
SduI	GDGCHC	2 cut(s)	72, 529
SfaNI	GCATC	3 cut(s)	559, 1114, 1175
SfcI	CTRYAG	1 cut(s)	1182
SfuI	TTCGAA	1 cut(s)	17
SinI	GGWCC	2 cut(s)	41, 933
Sse9I	AATT	5 cut(s)	132, 293, 346, 632, 1011
SsiI	CCGC	2 cut(s)	328, 466
SspI	AATATT	1 cut(s)	506
SspMI	CTAG	1 cut(s)	810
StyI	CCWWGG	1 cut(s)	1047
TaaI	ACNGT	2 cut(s)	79, 1063
TaiI	ACGT	3 cut(s)	526, 667, 956
TaqI	TCGA	3 cut(s)	17, 576, 962
TasI	AATT	5 cut(s)	132, 293, 346, 632, 1011
TatI	WGTACW	1 cut(s)	1243
TfiI	GAWTC	4 cut(s)	261, 284, 595, 614
Tru1I	TTAA	1 cut(s)	608
Tru9I	TTAA	1 cut(s)	608
TscAI	CASTG	1 cut(s)	760
TseFI	GTSAC	1 cut(s)	1128
TseI	GCWGC	8 cut(s)	322, 728, 797, 800, 905, 1007, 1181, 1184
Tsp45I	GTSAC	1 cut(s)	1128
TspDTI	ATGAA	8 cut(s)	110, 114, 138, 422, 467, 705, 909, 912
TspGWI	ACGGA	1 cut(s)	977
TspRI	CASTG	1 cut(s)	760
Van91I	CCANNNNNTGG	2 cut(s)	79, 456
VpaK11BI	GGWCC	2 cut(s)	41, 933
XagI	CCTNNNNNAGG	1 cut(s)	1232
XapI	RAATTY	1 cut(s)	346
XcmI	CCANNNNNNNNNTGG	1 cut(s)	412
XmiI	GTMKAC	1 cut(s)	784
XspI	CTAG	1 cut(s)	810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.