Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010672

Physical Location & Seq

Genomic Coordinates Forward (+)

16503562 .. 16507475

Gene Structure 3914 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G41260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGGGTTGTGAGGTTTCAAAGTTATCTGCACTTTGTTGTGTTTCAGAGTCTGGAAGATCGAATCCTGATGTTACAGGCTTAGATGAGGAAGGGAGAGGTGAATCGAATGATTTGCCTCAATTTCGTGAGTTCTCTATAGAGACTATAAGGAACGCAACTTCAGGATTTGCAGCAGAGAATATAGTTTCAGAGCATGGTGAGAGAGCTCCTAATGTTGTCTATAAAGGCAAGCTTGAGAATCAAAGACGTATTGCTGTCAAAAGGTTTAACCGGAAATCTTGGCCTGATTCTCGTCAATTCTTGGAAGAAGCCAAAGCTGTTGGTCAATTACGGAATCATAGGATGGCAAATCTACTTGGGTGTTGTTATGAAGATGAAGAGAGACTACTTATTGCAGAGTTTATGCCTAATGAAACTTTGGCAAAACATCTTTTCCACTGGGAGTCACAGCCAATGAAGTGGGCGATGCGACTGAGAGTAGCTTTGCATATTGCTCAGGCGCTAGAGTATTGTACCAGCAAAGGACGTGCACTTTACCATGACCTAAATGCTTATAGAGTTCTCTTTGATGATGATGCAAATCCAAGACTTTCATGCTTTGGTTTGATGAAAAACAGTAGAGATGGAAAGAGTTATAGCACTAACCTGGCATTCACTCCTCCCGAGTATCTGAGGACAGGTCGCGTGACACCTGAAAGTGTAATATACAGCTTTGGAACTCTATTACTTGACCTTCTGAGTGGAAAGCATATACCTCCAAGCCATGCGTTGGACCTCATACGGGACAGGAACATTCAGATGCTGATGGATTCAGGTTTGGAAGGTCAATTTTCGAGTGACGATGGAACTGAATTAATAAGGTTAGCTTCAAGATGCTTGCAATATGAACCCCGAGAGCGGCCTAACCCAAAATCTTTAGTCTCTGCAATGATTCCTCTTCAGAAAGATCTTGAGATTGCTTCTCATCAATTGTTGGGCGTACCTAACAGTGCCACAACGACAGCTCTTTCACCTCTTGGCGAAGCATGCCTAAGATCAGATCTAACTGCCATACATGAGATCATTGAGAAGCTTGGATATAAGGATGACGAGGGTGCAACCACAGAGCTTTCTTTCCAGATGTGGACCGACCAGATGCAGGACACATTGGTCTTCAAGAAAAAGGGGGATTCTGCATTCCGACATAAAGACTTTGCAAAGGCCATCGAATGCTATTCTCAGTTCATCGAGGTAGGTACAATGGGTTCCCCAACTGTTCATGCAAGACAGAGTCTGTGTTACCTAATGAATGATATGCCTAGAGAAGCACTAAACAATGCAATGCAAGCACAAGTCATATCTCCTGCTTGGCATATCGCATCGTATCTCCAAGCTGTAGCTTTGTCAGCTCTAGGACAAGAGAACGAAGCACACACTGCTCTAAAAGACGGTGCAATGCTTGAAAGCAAAAGAAACCCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

487

Amino Acids

54.62

Weight (kDa)

5.92

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	72 - 309	9.9e-29	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	72 - 307	2.3e-24	Protein kinase domain
TPR_BSK1_C	PF25575	341 - 458	1.4e-60	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63500 AT5G41260
fragaria_vesca	FvH4_5g02320 FvH4_5g02320 FvH4_5g02320
malus_domestica	MD06G1082000.v1.1
prunus_persica	Prupe.5G099200_v2.0.a1 Prupe.5G099200_v2.0.a1 Prupe.5G099200_v2.0.a1 Prupe.5G099200_v2.0.a1
pyrus_communis	pycom06g07890
rosa_chinensis	RchiOBHm_Chr7g0197831
rosa_multiflora	Rmu_sc0001082.1_g000020
rosa_roxburghii	Rroxscaffold_3G00258180
rosa_rugosa	Rorug07G0043800
rosa_samantha	Rh7AG167600 Rh7BG170500 Rh7CG177000 Rh7DG169500
rosa_wichuraiana	Rw7G014610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1148
AccB7I	CCANNNNNTGG	1 cut(s)	769
AccBSI	CCGCTC	1 cut(s)	898
AccII	CGCG	1 cut(s)	684
AciI	CCGC	1 cut(s)	898
AcuI	CTGAAG	2 cut(s)	144, 923
AfaI	GTAC	3 cut(s)	514, 981, 1237
AfiI	CCNNNNNNNGG	4 cut(s)	769, 781, 897, 1138
AgsI	TTSAA	4 cut(s)	18, 870, 1156, 1442
AjiI	CACGTC	1 cut(s)	527
AjnI	CCWGG	1 cut(s)	645
Alw21I	GWGCWC	2 cut(s)	208, 532
Alw26I	GTCTC	3 cut(s)	134, 376, 925
Alw44I	GTGCAC	1 cut(s)	528
AlwNI	CAGNNNCTG	3 cut(s)	50, 802, 1273
Ama87I	CYCGRG	2 cut(s)	662, 891
AoxI	GGCC	3 cut(s)	281, 899, 1200
ApaLI	GTGCAC	1 cut(s)	528
ApeKI	GCWGC	1 cut(s)	170
AseI	ATTAAT	1 cut(s)	854
AspLEI	GCGC	1 cut(s)	502
AspS9I	GGNCC	2 cut(s)	772, 1125
AsuHPI	GGTGA	3 cut(s)	110, 209, 1002
AvaI	CYCGRG	2 cut(s)	662, 891
AvaII	GGWCC	2 cut(s)	772, 1125
BaeGI	GKGCMC	1 cut(s)	532
BanII	GRGCYC	1 cut(s)	208
BarI	GAAGNNNNNNTAC	2 cut(s)	369, 401
BbsI	GAAGAC	1 cut(s)	1144
Bbv12I	GWGCWC	2 cut(s)	208, 532
BbvI	GCAGC	1 cut(s)	182
BccI	CCATC	5 cut(s)	337, 617, 799, 836, 1211
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BciT130I	CCWGG	1 cut(s)	647
BcoDI	GTCTC	3 cut(s)	134, 376, 925
BfaI	CTAG	3 cut(s)	503, 1299, 1391
BfmI	CTRYAG	2 cut(s)	135, 1374
BfoI	RGCGCY	1 cut(s)	503
BglII	AGATCT	2 cut(s)	946, 1039
BisI	GCNGC	2 cut(s)	171, 899
BlsI	GCNGC	2 cut(s)	172, 900
Bme1390I	CCNGG	1 cut(s)	647
Bme18I	GGWCC	2 cut(s)	772, 1125
BmeT110I	CYCGRG	2 cut(s)	662, 891
BmgBI	CACGTC	1 cut(s)	527
BmgT120I	GGNCC	2 cut(s)	772, 1125
BmiI	GGNNCC	1 cut(s)	1246
BmrFI	CCNGG	1 cut(s)	647
BmrI	ACTGGG	1 cut(s)	448
BmsI	GCATC	6 cut(s)	456, 565, 789, 863, 1125, 1367
BmuI	ACTGGG	1 cut(s)	448
BpiI	GAAGAC	1 cut(s)	1144
Bpu10I	CCTNAGC	1 cut(s)	495
BpuEI	CTTGAG	2 cut(s)	254, 971
BsaBI	GATNNNNATC	1 cut(s)	579
BsaWI	WCCGGW	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	4 cut(s)	769, 781, 897, 1138
Bse1I	ACTGG	1 cut(s)	443
Bse3DI	GCAATG	3 cut(s)	933, 1326, 1440
Bse8I	GATNNNNATC	1 cut(s)	579
BseBI	CCWGG	1 cut(s)	647
BseGI	GGATG	2 cut(s)	348, 1090
BseJI	GATNNNNATC	1 cut(s)	579
BseLI	CCNNNNNNNGG	4 cut(s)	769, 781, 897, 1138
BseMI	GCAATG	3 cut(s)	933, 1326, 1440
BseMII	CTCAG	5 cut(s)	464, 509, 662, 728, 1232
BseNI	ACTGG	1 cut(s)	443
BseRI	GAGGAG	1 cut(s)	648
BseSI	GKGCMC	1 cut(s)	532
BseXI	GCAGC	1 cut(s)	182
BsgI	GTGCAG	1 cut(s)	12
Bsh1236I	CGCG	1 cut(s)	684
BshFI	GGCC	3 cut(s)	283, 901, 1202
BsiHKAI	GWGCWC	2 cut(s)	208, 532
BsiHKCI	CYCGRG	2 cut(s)	662, 891
BsiSI	CCGG	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	797
BslI	CCNNNNNNNGG	4 cut(s)	769, 781, 897, 1138
BsmAI	GTCTC	3 cut(s)	134, 376, 925
BsmFI	GGGAC	1 cut(s)	797
BsmI	GAATGC	3 cut(s)	650, 1175, 1214
BsnI	GGCC	3 cut(s)	283, 901, 1202
BsoBI	CYCGRG	2 cut(s)	662, 891
Bsp1286I	GDGCHC	2 cut(s)	208, 532
Bsp143I	GATC	5 cut(s)	56, 946, 1034, 1039, 1059
BspACI	CCGC	1 cut(s)	898
BspANI	GGCC	3 cut(s)	283, 901, 1202
BspCNI	CTCAG	5 cut(s)	465, 508, 663, 729, 1231
BspFNI	CGCG	1 cut(s)	684
BspLI	GGNNCC	1 cut(s)	1246
BsrBI	CCGCTC	1 cut(s)	898
BsrDI	GCAATG	3 cut(s)	933, 1326, 1440
BsrI	ACTGG	1 cut(s)	443
BssMI	GATC	5 cut(s)	56, 946, 1034, 1039, 1059
Bst2UI	CCWGG	1 cut(s)	647
Bst4CI	ACNGT	4 cut(s)	617, 989, 1255, 1430
Bst6I	CTCTTC	2 cut(s)	372, 942
BstAPI	GCANNNNNTGC	1 cut(s)	1415
BstC8I	GCNNGC	4 cut(s)	230, 878, 1027, 1326
BstDEI	CTNAG	7 cut(s)	79, 473, 495, 671, 737, 1031, 1218
BstF5I	GGATG	2 cut(s)	348, 1090
BstFNI	CGCG	1 cut(s)	684
BstH2I	RGCGCY	1 cut(s)	503
BstHHI	GCGC	1 cut(s)	502
BstKTI	GATC	5 cut(s)	59, 949, 1037, 1042, 1062
BstMAI	GTCTC	3 cut(s)	134, 376, 925
BstMBI	GATC	5 cut(s)	56, 946, 1034, 1039, 1059
BstMWI	GCNNNNNNNGC	4 cut(s)	1026, 1325, 1385, 1415
BstNI	CCWGG	1 cut(s)	647
BstNSI	RCATGY	1 cut(s)	1029
BstSCI	CCNGG	1 cut(s)	645
BstSFI	CTRYAG	2 cut(s)	135, 1374
BstSLI	GKGCMC	1 cut(s)	532
BstUI	CGCG	1 cut(s)	684
BstV1I	GCAGC	1 cut(s)	182
BstV2I	GAAGAC	1 cut(s)	1144
BstX2I	RGATCY	2 cut(s)	946, 1039
BstXI	CCANNNNNNTGG	1 cut(s)	459
BstYI	RGATCY	2 cut(s)	946, 1039
BsuRI	GGCC	3 cut(s)	283, 901, 1202
BtgZI	GCGATG	1 cut(s)	479
BtrI	CACGTC	1 cut(s)	527
BtsCI	GGATG	2 cut(s)	348, 1090
BtsI	GCAGTG	1 cut(s)	1413
BtsIMutI	CAGTG	3 cut(s)	436, 994, 1413
Cac8I	GCNNGC	4 cut(s)	230, 878, 1027, 1326
CaiI	CAGNNNCTG	3 cut(s)	50, 802, 1273
CfoI	GCGC	1 cut(s)	502
Cfr13I	GGNCC	2 cut(s)	772, 1125
Csp6I	GTAC	3 cut(s)	513, 980, 1236
CviAII	CATG	7 cut(s)	194, 539, 594, 764, 1026, 1055, 1259
CviQI	GTAC	3 cut(s)	513, 980, 1236
DdeI	CTNAG	7 cut(s)	79, 473, 495, 671, 737, 1031, 1218
DpnI	GATC	5 cut(s)	58, 948, 1036, 1041, 1061
DpnII	GATC	5 cut(s)	56, 946, 1034, 1039, 1059
DrdI	GACNNNNNNGTC	1 cut(s)	1148
DseDI	GACNNNNNNGTC	1 cut(s)	1148
Eam1104I	CTCTTC	2 cut(s)	372, 942
EarI	CTCTTC	2 cut(s)	372, 942
Ecl136II	GAGCTC	1 cut(s)	206
Eco24I	GRGCYC	1 cut(s)	208
Eco47I	GGWCC	2 cut(s)	772, 1125
Eco53kI	GAGCTC	1 cut(s)	206
Eco57I	CTGAAG	2 cut(s)	144, 923
Eco88I	CYCGRG	2 cut(s)	662, 891
EcoICRI	GAGCTC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	645
EcoT38I	GRGCYC	1 cut(s)	208
FaeI	CATG	7 cut(s)	197, 542, 597, 767, 1029, 1058, 1262
FalI	AAGNNNNNCTT	5 cut(s)	216, 248, 850, 882, 1441
FaqI	GGGAC	1 cut(s)	797
FatI	CATG	7 cut(s)	193, 538, 593, 763, 1025, 1054, 1258
Fnu4HI	GCNGC	2 cut(s)	171, 899
FokI	GGATG	2 cut(s)	355, 1097
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	2 cut(s)	171, 899
FspBI	CTAG	3 cut(s)	503, 1299, 1391
GlaI	GCGC	1 cut(s)	501
GluI	GCNGC	2 cut(s)	171, 899
HaeII	RGCGCY	1 cut(s)	503
HaeIII	GGCC	3 cut(s)	283, 901, 1202
HapII	CCGG	1 cut(s)	271
HhaI	GCGC	1 cut(s)	502
Hin1II	CATG	7 cut(s)	197, 542, 597, 767, 1029, 1058, 1262
Hin6I	GCGC	1 cut(s)	500
HinP1I	GCGC	1 cut(s)	500
HindIII	AAGCTT	2 cut(s)	230, 1070
HpaII	CCGG	1 cut(s)	271
HphI	GGTGA	3 cut(s)	110, 209, 1002
Hpy166II	GTNNAC	2 cut(s)	530, 1125
Hpy188I	TCNGA	8 cut(s)	46, 190, 672, 738, 798, 942, 1039, 1181
Hpy188III	TCNNGA	9 cut(s)	51, 65, 125, 162, 662, 870, 950, 1117, 1156
Hpy8I	GTNNAC	2 cut(s)	530, 1125
HpyAV	CCTTC	3 cut(s)	83, 743, 815
HpyCH4III	ACNGT	4 cut(s)	617, 989, 1255, 1430
HpyCH4IV	ACGT	2 cut(s)	247, 526
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1026, 1325, 1385, 1415
HpyF3I	CTNAG	7 cut(s)	79, 473, 495, 671, 737, 1031, 1218
HpySE526I	ACGT	2 cut(s)	247, 526
Hsp92II	CATG	7 cut(s)	197, 542, 597, 767, 1029, 1058, 1262
HspAI	GCGC	1 cut(s)	500
Kzo9I	GATC	5 cut(s)	56, 946, 1034, 1039, 1059
LmnI	GCTCC	1 cut(s)	211
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	6 cut(s)	456, 565, 789, 863, 1125, 1367
MaeI	CTAG	3 cut(s)	503, 1299, 1391
MaeII	ACGT	2 cut(s)	247, 526
MaeIII	GTNAC	5 cut(s)	70, 444, 685, 836, 1277
MalI	GATC	5 cut(s)	58, 948, 1036, 1041, 1061
MbiI	CCGCTC	1 cut(s)	898
MboI	GATC	5 cut(s)	56, 946, 1034, 1039, 1059
MboII	GAAGA	6 cut(s)	66, 317, 383, 389, 929, 1144
MfeI	CAATTG	1 cut(s)	968
MflI	RGATCY	2 cut(s)	946, 1039
MhlI	GDGCHC	2 cut(s)	208, 532
MluCI	AATT	6 cut(s)	119, 296, 326, 827, 851, 968
MlyI	GAGTC	3 cut(s)	56, 452, 1279
MmeI	TCCRAC	2 cut(s)	750, 1204
MseI	TTAA	2 cut(s)	267, 854
MslI	CAYNNNNRTG	1 cut(s)	797
MspI	CCGG	1 cut(s)	271
MspR9I	CCNGG	1 cut(s)	647
MunI	CAATTG	1 cut(s)	968
Mva1269I	GAATGC	3 cut(s)	650, 1175, 1214
MvaI	CCWGG	1 cut(s)	647
MvnI	CGCG	1 cut(s)	684
MwoI	GCNNNNNNNGC	4 cut(s)	1026, 1325, 1385, 1415
NdeII	GATC	5 cut(s)	56, 946, 1034, 1039, 1059
NlaIII	CATG	7 cut(s)	197, 542, 597, 767, 1029, 1058, 1262
NlaIV	GGNNCC	1 cut(s)	1246
NmuCI	GTSAC	3 cut(s)	444, 685, 836
NspI	RCATGY	1 cut(s)	1029
PaeI	GCATGC	1 cut(s)	1029
PctI	GAATGC	3 cut(s)	650, 1175, 1214
PfeI	GAWTC	8 cut(s)	61, 101, 238, 287, 334, 809, 931, 1169
PflFI	GACNNNGTC	1 cut(s)	1269
PflMI	CCANNNNNTGG	1 cut(s)	769
PkrI	GCNGC	2 cut(s)	172, 900
PleI	GAGTC	3 cut(s)	55, 451, 1278
PpsI	GAGTC	3 cut(s)	55, 451, 1278
PshBI	ATTAAT	1 cut(s)	854
Psp124BI	GAGCTC	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	645
PspGI	CCWGG	1 cut(s)	645
PspN4I	GGNNCC	1 cut(s)	1246
PspPI	GGNCC	2 cut(s)	772, 1125
PsrI	GAACNNNNNNTAC	2 cut(s)	1228, 1260
PstNI	CAGNNNCTG	3 cut(s)	50, 802, 1273
PsuI	RGATCY	2 cut(s)	946, 1039
PsyI	GACNNNGTC	1 cut(s)	1269
RsaI	GTAC	3 cut(s)	514, 981, 1237
RsaNI	GTAC	3 cut(s)	513, 980, 1236
RseI	CAYNNNNRTG	1 cut(s)	797
SacI	GAGCTC	1 cut(s)	208
SaqAI	TTAA	2 cut(s)	267, 854
SatI	GCNGC	2 cut(s)	171, 899
Sau3AI	GATC	5 cut(s)	56, 946, 1034, 1039, 1059
Sau96I	GGNCC	2 cut(s)	772, 1125
SchI	GAGTC	3 cut(s)	56, 452, 1279
ScrFI	CCNGG	1 cut(s)	647
SduI	GDGCHC	2 cut(s)	208, 532
SfaNI	GCATC	6 cut(s)	456, 565, 789, 863, 1125, 1367
SfcI	CTRYAG	2 cut(s)	135, 1374
SinI	GGWCC	2 cut(s)	772, 1125
SmiMI	CAYNNNNRTG	1 cut(s)	797
SmlI	CTYRAG	2 cut(s)	233, 950
SmoI	CTYRAG	2 cut(s)	233, 950
SphI	GCATGC	1 cut(s)	1029
Sse9I	AATT	6 cut(s)	119, 296, 326, 827, 851, 968
SsiI	CCGC	1 cut(s)	898
SspMI	CTAG	3 cut(s)	503, 1299, 1391
SstI	GAGCTC	1 cut(s)	208
StyD4I	CCNGG	1 cut(s)	645
TaaI	ACNGT	4 cut(s)	617, 989, 1255, 1430
TaiI	ACGT	2 cut(s)	250, 529
TaqI	TCGA	5 cut(s)	59, 104, 833, 1206, 1227
TaqII	GACCGA	1 cut(s)	1142
TasI	AATT	6 cut(s)	119, 296, 326, 827, 851, 968
TauI	GCSGC	1 cut(s)	901
TfiI	GAWTC	8 cut(s)	61, 101, 238, 287, 334, 809, 931, 1169
Tru1I	TTAA	2 cut(s)	267, 854
Tru9I	TTAA	2 cut(s)	267, 854
TscAI	CASTG	3 cut(s)	443, 994, 1420
TseFI	GTSAC	3 cut(s)	444, 685, 836
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	3 cut(s)	444, 685, 836
TspGWI	ACGGA	1 cut(s)	346
TspRI	CASTG	3 cut(s)	443, 994, 1420
Tth111I	GACNNNGTC	1 cut(s)	1269
Van91I	CCANNNNNTGG	1 cut(s)	769
VneI	GTGCAC	1 cut(s)	528
VpaK11BI	GGWCC	2 cut(s)	772, 1125
VspI	ATTAAT	1 cut(s)	854
XceI	RCATGY	1 cut(s)	1029
XspI	CTAG	3 cut(s)	503, 1299, 1391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.