Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0010672

Physical Location & Seq

Genomic Coordinates Forward (+)

12876000 .. 12880924

Gene Structure 4925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g07890.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGCCCAATGATACATTGGCAAAGCATTTATTCCATTGGGAAACACAACCCATGAAGTGGGCAATGCGGTTAAGGGTGGCTTTATATCTTGCACAGGCCCTTGAATATTGTACCAGTAAAGGACGTGCCCTTTATCATGATTTAAATGCATATAGAATTGTCTTTGATGATGATTGTAACCCTAGACTTTCTTGCTTTGGTCTGATGAAAAACAGTAGAGATGGAAAAAGCTACAGTACAAACCTGGCATTTACTCCTCCTGAGTATCTAAGGACAGGAAGAGTTACTGCAGAAAGTGTAATGTATAGCTTTGGCACCCTTTTGCTTGACCTCCTCAGTGGAAAACATATTCCTCCGAGCCATGCACTTGACCTTATTCGCGACAGGAATCTTCAGATGCTAACAGATTCTTGTTTGGAAGGCCAATTCTCAAATGATGAGGGAACGGAATTAGTCCGTTTGGCTTCAAGATGTTTGCAATATGAACCGCGAGAGCGTCCTAATCCAAAGTCATTAGTTGCTGCCTTGGTTCCTCTTCAGAAGGACACAGAGGTTCCTTCTCATGTATTGATGGGTATACCACATGGTGCAGCAGCTTTACCTAATCTATCACCATTTGGTGAAGCTTGTGTGAGGACGGATTTAACGGCTATTCATGAGATCATAGAAAGTATTGGATACAAGGATGATGAAGGTGCAGCAACTGAGCTTTCATTCCAGATGTGGACCAACCAGATGCAGGAGACATTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCCGTCATAAAGATTTCAGAGCTGCAATTGAGTGCTACTCCCAGTTTATTGATGTCGGAACCATGGTTTCCCCGACAGTTTTTGCACGCCGTAGCTTGTCATACCTCATGAATGATATGCCACAGGAAGCCTTGAATGATGCGGCACAAGCCCAAGTGATTTTCCCTGTTTGGCACATTGCCTTGTATTTGCAAGCTGCAGCACTTTTGGCACTTGGAAAGAATGACGAGGCACAGGTAGCCCTCAAAGAGGGTAGTGTACTTGAAAGTAAAAGGAATGCAAGCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

356

Amino Acids

39.7

Weight (kDa)

5.95

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63500 AT5G41260
fragaria_vesca	FvH4_5g02320 FvH4_5g02320 FvH4_5g02320
malus_domestica	MD06G1082000.v1.1
prunus_persica	Prupe.5G099200_v2.0.a1 Prupe.5G099200_v2.0.a1 Prupe.5G099200_v2.0.a1 Prupe.5G099200_v2.0.a1
pyrus_communis	pycom06g07890
rosa_chinensis	RchiOBHm_Chr7g0197831
rosa_multiflora	Rmu_sc0001082.1_g000020
rosa_roxburghii	Rroxscaffold_3G00258180
rosa_rugosa	Rorug07G0043800
rosa_samantha	Rh7AG167600 Rh7BG170500 Rh7CG177000 Rh7DG169500
rosa_wichuraiana	Rw7G014610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	314
AccB7I	CCANNNNNTGG	1 cut(s)	57
AccI	GTMKAC	1 cut(s)	577
AccII	CGCG	2 cut(s)	381, 490
AciI	CCGC	3 cut(s)	67, 488, 920
AcuI	CTGAAG	2 cut(s)	377, 521
AdeI	CACNNNGTG	1 cut(s)	587
AfaI	GTAC	3 cut(s)	112, 238, 1038
AfeI	AGCGCT	1 cut(s)	1063
AfiI	CCNNNNNNNGG	3 cut(s)	57, 739, 1027
AgsI	TTSAA	5 cut(s)	104, 468, 751, 913, 1043
AjiI	CACGTC	1 cut(s)	125
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	8 cut(s)	231, 309, 596, 626, 709, 800, 873, 974
AluI	AGCT	8 cut(s)	231, 309, 596, 626, 709, 800, 873, 974
Alw26I	GTCTC	1 cut(s)	737
AlwNI	CAGNNNCTG	1 cut(s)	704
Aor51HI	AGCGCT	1 cut(s)	1063
AoxI	GGCC	2 cut(s)	96, 421
ApeKI	GCWGC	7 cut(s)	521, 590, 593, 698, 800, 974, 977
AspLEI	GCGC	1 cut(s)	1064
AspS9I	GGNCC	2 cut(s)	97, 726
AsuHPI	GGTGA	3 cut(s)	603, 632, 779
AvaII	GGWCC	1 cut(s)	726
BaeGI	GKGCMC	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	314
BbvI	GCAGC	7 cut(s)	508, 602, 605, 710, 787, 961, 989
BccI	CCATC	2 cut(s)	215, 565
BceAI	ACGGC	2 cut(s)	663, 852
BciT130I	CCWGG	1 cut(s)	245
BciVI	GTATCC	1 cut(s)	671
BcoDI	GTCTC	1 cut(s)	737
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	3 cut(s)	232, 288, 975
BfoI	RGCGCY	1 cut(s)	1065
BfuI	GTATCC	1 cut(s)	671
BisI	GCNGC	8 cut(s)	522, 591, 594, 699, 801, 921, 975, 978
BlsI	GCNGC	8 cut(s)	523, 592, 595, 700, 802, 922, 976, 979
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	726
BmgBI	CACGTC	1 cut(s)	125
BmgT120I	GGNCC	2 cut(s)	97, 726
BmiI	GGNNCC	4 cut(s)	316, 531, 555, 838
BmrFI	CCNGG	1 cut(s)	245
BmrI	ACTGGG	1 cut(s)	814
BmsI	GCATC	3 cut(s)	387, 726, 907
BmuI	ACTGGG	1 cut(s)	814
BplI	GAGNNNNNCTC	2 cut(s)	800, 832
BsaJI	CCNNGG	2 cut(s)	525, 840
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 739, 1027
Bse1I	ACTGG	2 cut(s)	114, 820
Bse3DI	GCAATG	2 cut(s)	69, 954
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	2 cut(s)	525, 840
BseGI	GGATG	1 cut(s)	691
BseLI	CCNNNNNNNGG	3 cut(s)	57, 739, 1027
BseMI	GCAATG	2 cut(s)	69, 954
BseMII	CTCAG	3 cut(s)	252, 349, 696
BseNI	ACTGG	2 cut(s)	114, 820
BseRI	GAGGAG	2 cut(s)	246, 323
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	7 cut(s)	508, 602, 605, 710, 787, 961, 989
BsgI	GTGCAG	2 cut(s)	609, 717
Bsh1236I	CGCG	2 cut(s)	381, 490
BshFI	GGCC	2 cut(s)	98, 423
BshNI	GGYRCC	1 cut(s)	314
BslI	CCNNNNNNNGG	3 cut(s)	57, 739, 1027
BsmAI	GTCTC	1 cut(s)	737
BsmI	GAATGC	1 cut(s)	1060
BsnI	GGCC	2 cut(s)	98, 423
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp143I	GATC	1 cut(s)	660
Bsp19I	CCATGG	1 cut(s)	840
Bsp68I	TCGCGA	1 cut(s)	381
BspACI	CCGC	3 cut(s)	67, 488, 920
BspANI	GGCC	2 cut(s)	98, 423
BspCNI	CTCAG	3 cut(s)	253, 348, 697
BspFNI	CGCG	2 cut(s)	381, 490
BspHI	TCATGA	3 cut(s)	136, 655, 885
BspLI	GGNNCC	4 cut(s)	316, 531, 555, 838
BspMAI	CTGCAG	2 cut(s)	292, 979
BspT107I	GGYRCC	1 cut(s)	314
BsrDI	GCAATG	2 cut(s)	69, 954
BsrI	ACTGG	2 cut(s)	114, 820
BssECI	CCNNGG	2 cut(s)	525, 840
BssMI	GATC	1 cut(s)	660
BssNAI	GTATAC	1 cut(s)	578
BssT1I	CCWWGG	2 cut(s)	525, 840
Bst1107I	GTATAC	1 cut(s)	578
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	3 cut(s)	215, 236, 856
Bst6I	CTCTTC	2 cut(s)	274, 540
BstC8I	GCNNGC	3 cut(s)	865, 972, 1060
BstDEI	CTNAG	4 cut(s)	261, 269, 335, 705
BstDSI	CCRYGG	1 cut(s)	840
BstENI	CCTNNNNNAGG	1 cut(s)	1025
BstF5I	GGATG	1 cut(s)	691
BstFNI	CGCG	2 cut(s)	381, 490
BstH2I	RGCGCY	1 cut(s)	1065
BstHHI	GCGC	1 cut(s)	1064
BstKTI	GATC	1 cut(s)	663
BstMAI	GTCTC	1 cut(s)	737
BstMBI	GATC	1 cut(s)	660
BstMWI	GCNNNNNNNGC	3 cut(s)	926, 986, 1016
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	3 cut(s)	232, 288, 975
BstSLI	GKGCMC	1 cut(s)	130
BstUI	CGCG	2 cut(s)	381, 490
BstV1I	GCAGC	7 cut(s)	508, 602, 605, 710, 787, 961, 989
BstZ17I	GTATAC	1 cut(s)	578
BsuI	GTATCC	1 cut(s)	671
BsuRI	GGCC	2 cut(s)	98, 423
BtgI	CCRYGG	1 cut(s)	840
BtrI	CACGTC	1 cut(s)	125
BtsCI	GGATG	1 cut(s)	691
BtsIMutI	CAGTG	1 cut(s)	343
BtuMI	TCGCGA	1 cut(s)	381
Cac8I	GCNNGC	3 cut(s)	865, 972, 1060
CaiI	CAGNNNCTG	1 cut(s)	704
CciI	TCATGA	3 cut(s)	136, 655, 885
CfoI	GCGC	1 cut(s)	1064
Cfr13I	GGNCC	2 cut(s)	97, 726
CseI	GACGC	1 cut(s)	485
Csp6I	GTAC	3 cut(s)	111, 237, 1037
CviAII	CATG	8 cut(s)	52, 137, 362, 563, 584, 656, 841, 886
CviQI	GTAC	3 cut(s)	111, 237, 1037
DdeI	CTNAG	4 cut(s)	261, 269, 335, 705
DpnI	GATC	1 cut(s)	662
DpnII	GATC	1 cut(s)	660
DraI	TTTAAA	1 cut(s)	144
DraIII	CACNNNGTG	1 cut(s)	587
Eam1104I	CTCTTC	2 cut(s)	274, 540
EarI	CTCTTC	2 cut(s)	274, 540
Eco130I	CCWWGG	2 cut(s)	525, 840
Eco47I	GGWCC	1 cut(s)	726
Eco47III	AGCGCT	1 cut(s)	1063
Eco57I	CTGAAG	2 cut(s)	377, 521
EcoNI	CCTNNNNNAGG	1 cut(s)	1025
EcoO109I	RGGNCCY	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	243
EcoT14I	CCWWGG	2 cut(s)	525, 840
EcoT22I	ATGCAT	1 cut(s)	151
ErhI	CCWWGG	2 cut(s)	525, 840
FaeI	CATG	8 cut(s)	55, 140, 365, 566, 587, 659, 844, 889
FalI	AAGNNNNNCTT	2 cut(s)	64, 96
FatI	CATG	8 cut(s)	51, 136, 361, 562, 583, 655, 840, 885
FblI	GTMKAC	1 cut(s)	577
Fnu4HI	GCNGC	8 cut(s)	522, 591, 594, 699, 801, 921, 975, 978
FokI	GGATG	1 cut(s)	698
Fsp4HI	GCNGC	8 cut(s)	522, 591, 594, 699, 801, 921, 975, 978
FspBI	CTAG	1 cut(s)	183
GlaI	GCGC	1 cut(s)	1063
GluI	GCNGC	8 cut(s)	522, 591, 594, 699, 801, 921, 975, 978
HaeII	RGCGCY	1 cut(s)	1065
HaeIII	GGCC	2 cut(s)	98, 423
HgaI	GACGC	1 cut(s)	485
HhaI	GCGC	1 cut(s)	1064
Hin1II	CATG	8 cut(s)	55, 140, 365, 566, 587, 659, 844, 889
Hin6I	GCGC	1 cut(s)	1062
HinP1I	GCGC	1 cut(s)	1062
HindIII	AAGCTT	1 cut(s)	624
HinfI	GANTC	2 cut(s)	388, 407
HphI	GGTGA	3 cut(s)	603, 632, 779
Hpy166II	GTNNAC	3 cut(s)	578, 726, 1037
Hpy188I	TCNGA	6 cut(s)	204, 357, 396, 540, 797, 836
Hpy188III	TCNNGA	7 cut(s)	137, 260, 380, 468, 656, 718, 886
Hpy8I	GTNNAC	3 cut(s)	578, 726, 1037
HpyAV	CCTTC	4 cut(s)	413, 535, 567, 686
HpyCH4III	ACNGT	3 cut(s)	215, 236, 856
HpyCH4IV	ACGT	1 cut(s)	124
HpyF10VI	GCNNNNNNNGC	3 cut(s)	926, 986, 1016
HpyF3I	CTNAG	4 cut(s)	261, 269, 335, 705
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	8 cut(s)	55, 140, 365, 566, 587, 659, 844, 889
HspAI	GCGC	1 cut(s)	1062
Kzo9I	GATC	1 cut(s)	660
Lsp1109I	GCAGC	7 cut(s)	508, 602, 605, 710, 787, 961, 989
LweI	GCATC	3 cut(s)	387, 726, 907
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	2 cut(s)	176, 283
MalI	GATC	1 cut(s)	662
MboI	GATC	1 cut(s)	660
MboII	GAAGA	3 cut(s)	291, 383, 527
MfeI	CAATTG	1 cut(s)	804
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	4 cut(s)	156, 425, 449, 804
MmeI	TCCRAC	1 cut(s)	814
Mph1103I	ATGCAT	1 cut(s)	151
MseI	TTAA	3 cut(s)	71, 143, 644
MspR9I	CCNGG	1 cut(s)	245
MunI	CAATTG	1 cut(s)	804
Mva1269I	GAATGC	1 cut(s)	1060
MvaI	CCWGG	1 cut(s)	245
MvnI	CGCG	2 cut(s)	381, 490
MwoI	GCNNNNNNNGC	3 cut(s)	926, 986, 1016
NcoI	CCATGG	1 cut(s)	840
NdeII	GATC	1 cut(s)	660
NlaIII	CATG	8 cut(s)	55, 140, 365, 566, 587, 659, 844, 889
NlaIV	GGNNCC	4 cut(s)	316, 531, 555, 838
NruI	TCGCGA	1 cut(s)	381
NsiI	ATGCAT	1 cut(s)	151
PagI	TCATGA	3 cut(s)	136, 655, 885
PctI	GAATGC	1 cut(s)	1060
PfeI	GAWTC	2 cut(s)	388, 407
PflMI	CCANNNNNTGG	1 cut(s)	57
PkrI	GCNGC	8 cut(s)	523, 592, 595, 700, 802, 922, 976, 979
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	4 cut(s)	316, 531, 555, 838
PspPI	GGNCC	2 cut(s)	97, 726
PstI	CTGCAG	2 cut(s)	292, 979
PstNI	CAGNNNCTG	1 cut(s)	704
RruI	TCGCGA	1 cut(s)	381
RsaI	GTAC	3 cut(s)	112, 238, 1038
RsaNI	GTAC	3 cut(s)	111, 237, 1037
SaqAI	TTAA	3 cut(s)	71, 143, 644
SatI	GCNGC	8 cut(s)	522, 591, 594, 699, 801, 921, 975, 978
Sau3AI	GATC	1 cut(s)	660
Sau96I	GGNCC	2 cut(s)	97, 726
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	130
SfaNI	GCATC	3 cut(s)	387, 726, 907
SfcI	CTRYAG	3 cut(s)	232, 288, 975
SinI	GGWCC	1 cut(s)	726
SmiI	ATTTAAAT	1 cut(s)	144
Sse9I	AATT	4 cut(s)	156, 425, 449, 804
SsiI	CCGC	3 cut(s)	67, 488, 920
SspI	AATATT	1 cut(s)	107
SspMI	CTAG	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	2 cut(s)	525, 840
SwaI	ATTTAAAT	1 cut(s)	144
TaaI	ACNGT	3 cut(s)	215, 236, 856
TaiI	ACGT	1 cut(s)	127
TasI	AATT	4 cut(s)	156, 425, 449, 804
TatI	WGTACW	2 cut(s)	236, 1036
TauI	GCSGC	1 cut(s)	923
TfiI	GAWTC	2 cut(s)	388, 407
Tru1I	TTAA	3 cut(s)	71, 143, 644
Tru9I	TTAA	3 cut(s)	71, 143, 644
TscAI	CASTG	1 cut(s)	343
TseI	GCWGC	7 cut(s)	521, 590, 593, 698, 800, 974, 977
TspDTI	ATGAA	7 cut(s)	68, 221, 498, 644, 702, 705, 902
TspGWI	ACGGA	4 cut(s)	446, 461, 653, 770
TspRI	CASTG	1 cut(s)	343
Van91I	CCANNNNNTGG	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	726
XagI	CCTNNNNNAGG	1 cut(s)	1025
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XmiI	GTMKAC	1 cut(s)	577
XspI	CTAG	1 cut(s)	183
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.